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Conserved domains on  [gi|779912566|ref|WP_045379412|]
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MULTISPECIES: type-F conjugative transfer system pilin chaperone TraQ [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraQ super family cl11516
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 1-82 3.13e-39

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


The actual alignment was detected with superfamily member TIGR02741:

Pssm-ID: 386150  Cd Length: 80  Bit Score: 124.61  E-value: 3.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566   1 MRKFRFRLPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIdaAREAEKARDAGGYRH 80
Cdd:TIGR02741  1 MRKFRFSLPEFDITGLWVFSLGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWI--ARVSREERDALEARQ 78


                 ..
gi 779912566  81 EP 82
Cdd:TIGR02741 79 EA 80
 
Name Accession Description Interval E-value
TraQ TIGR02741
type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific ...
 1-82 3.13e-39

type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 131788  Cd Length: 80  Bit Score: 124.61  E-value: 3.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566   1 MRKFRFRLPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIdaAREAEKARDAGGYRH 80
Cdd:TIGR02741  1 MRKFRFSLPEFDITGLWVFSLGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWI--ARVSREERDALEARQ 78


                 ..
gi 779912566  81 EP 82
Cdd:TIGR02741 79 EA 80
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 1-82 6.96e-38

conjugal transfer pilin chaperone TraQ; Provisional


Pssm-ID: 237483  Cd Length: 80  Bit Score: 121.08  E-value: 6.96e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566  1 MRKFRFRLPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIdaAREAEKARDAGGYRH 80
Cdd:PRK13727  1 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWI--ARVSREEREALEARQ 78


                ..
gi 779912566 81 EP 82
Cdd:PRK13727 79 QA 80
TraQ pfam09679
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 1-81 1.53e-32

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 370613  Cd Length: 85  Bit Score: 107.67  E-value: 1.53e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566   1 MRKFRFrlPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIDAAREAEKARDAGGYRH 80
Cdd:pfam09679  1 MRKFRF--PALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWIARVADERLAPEKDAEKA 78


                 .
gi 779912566  81 E 81
Cdd:pfam09679 79 E 79
 
Name Accession Description Interval E-value
TraQ TIGR02741
type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific ...
 1-82 3.13e-39

type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 131788  Cd Length: 80  Bit Score: 124.61  E-value: 3.13e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566   1 MRKFRFRLPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIdaAREAEKARDAGGYRH 80
Cdd:TIGR02741  1 MRKFRFSLPEFDITGLWVFSLGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWI--ARVSREERDALEARQ 78


                 ..
gi 779912566  81 EP 82
Cdd:TIGR02741 79 EA 80
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 1-82 6.96e-38

conjugal transfer pilin chaperone TraQ; Provisional


Pssm-ID: 237483  Cd Length: 80  Bit Score: 121.08  E-value: 6.96e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566  1 MRKFRFRLPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIdaAREAEKARDAGGYRH 80
Cdd:PRK13727  1 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWI--ARVSREEREALEARQ 78


                ..
gi 779912566 81 EP 82
Cdd:PRK13727 79 QA 80
TraQ pfam09679
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 1-81 1.53e-32

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 370613  Cd Length: 85  Bit Score: 107.67  E-value: 1.53e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 779912566   1 MRKFRFrlPEFDVPGLWVLSLGIWFHIVSRLVRREPEMAILLAQIIGVSMVLWGGYRIINRWIDAAREAEKARDAGGYRH 80
Cdd:pfam09679  1 MRKFRF--PALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWIARVADERLAPEKDAEKA 78


                 .
gi 779912566  81 E 81
Cdd:pfam09679 79 E 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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