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Conserved domains on  [gi|769951582|ref|WP_045084827|]
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YebG family protein [Photobacterium angustum]

Protein Classification

YebG family protein( domain architecture ID 10006960)

YebG family protein similar to Escherichia coli DNA damage-inducible protein YebG

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-101 4.64e-28

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


:

Pssm-ID: 442375  Cd Length: 100  Bit Score: 97.72  E-value: 4.64e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769951582   2 AVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKREEVLIALGAKKAKTAA 81
Cdd:COG3141    1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80

                         90       100
                 ....*....|....*....|
gi 769951582  82 KKKVAKPEVVADSPEQEDAA 101
Cdd:COG3141   81 AEKEAEAAADKKKSTPIKAA 100
 
Name Accession Description Interval E-value
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-101 4.64e-28

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


Pssm-ID: 442375  Cd Length: 100  Bit Score: 97.72  E-value: 4.64e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769951582   2 AVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKREEVLIALGAKKAKTAA 81
Cdd:COG3141    1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80

                         90       100
                 ....*....|....*....|
gi 769951582  82 KKKVAKPEVVADSPEQEDAA 101
Cdd:COG3141   81 AEKEAEAAADKKKSTPIKAA 100
YebG pfam07130
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 3-73 1.34e-27

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


Pssm-ID: 429308  Cd Length: 72  Bit Score: 95.72  E-value: 1.34e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 769951582    3 VIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKREEVLIALG 73
Cdd:pfam07130   1 VETKYVVVRDGEEKMTFTDKKEADAYDKMLDLADNLTDFLEQSVIGLDEAQLEELALYLAKNKDDLAAALK 71
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-66 7.70e-18

DNA damage-inducible protein YebG; Provisional


Pssm-ID: 182216  Cd Length: 96  Bit Score: 71.70  E-value: 7.70e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 769951582   1 MAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKRE 66
Cdd:PRK10061   1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKD 66
 
Name Accession Description Interval E-value
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-101 4.64e-28

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


Pssm-ID: 442375  Cd Length: 100  Bit Score: 97.72  E-value: 4.64e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 769951582   2 AVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKREEVLIALGAKKAKTAA 81
Cdd:COG3141    1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80

                         90       100
                 ....*....|....*....|
gi 769951582  82 KKKVAKPEVVADSPEQEDAA 101
Cdd:COG3141   81 AEKEAEAAADKKKSTPIKAA 100
YebG pfam07130
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 3-73 1.34e-27

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


Pssm-ID: 429308  Cd Length: 72  Bit Score: 95.72  E-value: 1.34e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 769951582    3 VIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKREEVLIALG 73
Cdd:pfam07130   1 VETKYVVVRDGEEKMTFTDKKEADAYDKMLDLADNLTDFLEQSVIGLDEAQLEELALYLAKNKDDLAAALK 71
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-66 7.70e-18

DNA damage-inducible protein YebG; Provisional


Pssm-ID: 182216  Cd Length: 96  Bit Score: 71.70  E-value: 7.70e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 769951582   1 MAVIVKYVVERNGEEKMTFTSKSEADAYDKMLDMADEMFTLLSESELFEDEAKQEELSMFLAQKRE 66
Cdd:PRK10061   1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKD 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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