|
Name |
Accession |
Description |
Interval |
E-value |
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
78-462 |
0e+00 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 554.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 78 DSLEQAEAVRQIRDICQRLLDEHSAPVSSASRQLIIKQITDEVLGLGPLEPLLADHTVSDILVNGHDSVYVERFGKLQRT 157
Cdd:COG4962 11 RRLDREELREEVRAAVAEALRAEGLVLSDAEREALARAVLDELFGLGPLEPLLDDPDVTDIMVNGPDEVFVERGGRLERT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 158 DVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPPLAIDGPSISIRRFAVDLLNTDSLIQAGALTPA 237
Cdd:COG4962 91 DVRFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRVNAVIPPVARDGPSLSIRKFRKRPLTLEDLVALGSLTPE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 238 IALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQPHVVRLETRPANIEGRGEVGQRELV 317
Cdd:COG4962 171 MAEFLRAAVRARLNILVSGGTGSGKTTLLNALSGFIPPDERIVTIEDAAELQLQHPHVVRLETRPPNVEGAGEVTLRDLV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 318 RNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVENMVLMSGATFPIKAMRQQIASAIDVVIQ 397
Cdd:COG4962 251 RNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDGSMSTLHANSARDALARLETLALMAGENLPREAVRRQIASAIDLVVH 330
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 763053527 398 LERQEDGKRRLVSVQEINGMEGEIITMTEIFSFVRSGVGEQGqvlgdfrpsGMVPAFRDALAKRG 462
Cdd:COG4962 331 LERLRDGRRRVTEIAEVTGMEGGRVVLQPIFRFDPGGLDAAG---------GVRPRFLERLEAAG 386
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
131-411 |
1.56e-107 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 322.75 E-value: 1.56e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 131 ADHTVSDILVNGHDSVYVERFGKLQRTDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPPLAIDG 210
Cdd:TIGR03819 60 ADPGVTDVLVNGPDEVWVDRGRGLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDARLPDGTRLHAVLPPVATDG 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 211 PSISIRRFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQL 290
Cdd:TIGR03819 140 TCLSLRVPRRRTFTLDELVAAGTIPPGVARLLRALVAARLAFLVSGGTGSGKTTLLSALLALVPPDERIVLVEDAAELRP 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 291 QQPHVVRLETRPANIEGRGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVEN 370
Cdd:TIGR03819 220 DHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTLHANSPADVPARLEA 299
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 763053527 371 MVLMSGATFPikAMRQQIASAIDVVIQLERQEDGKRRLVSV 411
Cdd:TIGR03819 300 LGALAGLDRA--ALHSQLAAALDVVLHVRRTPRGRRRVAEI 338
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
238-414 |
1.36e-87 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 265.56 E-value: 1.36e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 238 IALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQPHVVRLETRPANIEGrGEVGQRELV 317
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEK-GEVTMADLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 318 RNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVENMVLMSGATFPIKAMRQQIASAIDVVIQ 397
Cdd:cd01130 80 KAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIASAIDVIVH 159
|
170
....*....|....*..
gi 763053527 398 LERQEDGKRRLVSVQEI 414
Cdd:cd01130 160 VKRLGDGVRRVTEIYEV 176
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
132-401 |
1.66e-64 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 209.45 E-value: 1.66e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 132 DHTVSDILVNGHDSVYVERF--GKLQRtDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLK-----DGSRVNAIIP 204
Cdd:pfam00437 9 DEGASDIHVEPPERIVWIRFrvDGVLR-EIPFPDADALARLISRIKVMARLDISERRPPQDGRLPlriggKGVRVRVSTL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 205 PLAIdGPSISIR---RFAVDLlNTDSLIQAGALTPAIALLLKaivRGRLNVLISGGTGCGKTTMLNVLSSFIP-HNERIV 280
Cdd:pfam00437 88 PTAG-GEKLVIRlldPSNVAL-SLDELGMTGAQDEALLEFLR---QPRGNILVTGPTGSGKTTTLYAALGELNtRDENIV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 281 TIEDSAELQLQQPHVVRLETRpaniegrGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDM-LTAMNTGHDGsLTTIHAN 359
Cdd:pfam00437 163 TVEDPVEIQLEGINQVQLNAR-------AGVTFADLLRAILRQDPDRIMVGEIRDLETAEIaLQAANTGHLV-LSTLHTN 234
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 763053527 360 TARDALGRVENMVLmsgatfPIKAMRQQIASAIdvVIQLERQ 401
Cdd:pfam00437 235 SAAGALTRLQDMGV------PPFELASSLLLVI--AQRLVRK 268
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
137-419 |
1.09e-52 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 180.32 E-value: 1.09e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 137 DILVNGHDSVYVERFGKLQR--TDVRFRDDQhllNIIDRIVSSLGRRIDESSPLVDARLK-DGSRVNAIIPPLaIDGPSI 213
Cdd:PRK13894 37 EIMLNADGKLWQERLGEPMRciGTLRVAQAQ---AIIETIAGYHGKEVTRSKPILEGELPlDGSRFAGQLPPV-VPAPTF 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 214 SIRRFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLN-VLSSFIPH--NERIVTIEDSAELQL 290
Cdd:PRK13894 113 AIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNaIINEMVIQdpTERVFIIEDTGEIQC 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 291 QQPHVVRLETRPaniegrgEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVEN 370
Cdd:PRK13894 193 AAENYVQYHTSI-------DVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLKS 265
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 763053527 371 MVLM-SGATFPIKAMrqqIASAIDVVIQLERQEDGKRrlvsVQEINGMEG 419
Cdd:PRK13894 266 LISMhPDAPKPIEPL---IGEAVHVVVHIARTPGGRR----IQEILEVSG 308
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
240-371 |
1.78e-11 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 64.39 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 240 LLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQlqQPHVVRLETRPaniegRGEVGQRELVRN 319
Cdd:NF041000 119 LLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNKQVITIEDPVEIK--EPNFLQLQVNE-----KAGMTYDTLLKA 191
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 763053527 320 SLRMRPDRIVIGEVRGAEALDM-LTAMNTGHDgSLTTIHANTARDALGRVENM 371
Cdd:NF041000 192 ALRHRPDILIIGEIRDAETAKAaIRAALTGHL-VLSTVHAKSAAGVIYRLLEL 243
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
251-333 |
7.81e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 251 NVLISGGTGCGKTTMLNVLSSFI-PHNERIVTIEDSAELQLQQPHVVRLETRPANIEGRGEVGQRELVRNSLRMRPDRIV 329
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELgPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83
|
....
gi 763053527 330 IGEV 333
Cdd:smart00382 84 LDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
78-462 |
0e+00 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 554.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 78 DSLEQAEAVRQIRDICQRLLDEHSAPVSSASRQLIIKQITDEVLGLGPLEPLLADHTVSDILVNGHDSVYVERFGKLQRT 157
Cdd:COG4962 11 RRLDREELREEVRAAVAEALRAEGLVLSDAEREALARAVLDELFGLGPLEPLLDDPDVTDIMVNGPDEVFVERGGRLERT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 158 DVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPPLAIDGPSISIRRFAVDLLNTDSLIQAGALTPA 237
Cdd:COG4962 91 DVRFDSEEELRRLIERIAARVGRRLDESSPIVDARLPDGSRVNAVIPPVARDGPSLSIRKFRKRPLTLEDLVALGSLTPE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 238 IALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQPHVVRLETRPANIEGRGEVGQRELV 317
Cdd:COG4962 171 MAEFLRAAVRARLNILVSGGTGSGKTTLLNALSGFIPPDERIVTIEDAAELQLQHPHVVRLETRPPNVEGAGEVTLRDLV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 318 RNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVENMVLMSGATFPIKAMRQQIASAIDVVIQ 397
Cdd:COG4962 251 RNALRMRPDRIIVGEVRGAEALDMLQAMNTGHDGSMSTLHANSARDALARLETLALMAGENLPREAVRRQIASAIDLVVH 330
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 763053527 398 LERQEDGKRRLVSVQEINGMEGEIITMTEIFSFVRSGVGEQGqvlgdfrpsGMVPAFRDALAKRG 462
Cdd:COG4962 331 LERLRDGRRRVTEIAEVTGMEGGRVVLQPIFRFDPGGLDAAG---------GVRPRFLERLEAAG 386
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
131-411 |
1.56e-107 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 322.75 E-value: 1.56e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 131 ADHTVSDILVNGHDSVYVERFGKLQRTDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPPLAIDG 210
Cdd:TIGR03819 60 ADPGVTDVLVNGPDEVWVDRGRGLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDARLPDGTRLHAVLPPVATDG 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 211 PSISIRRFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQL 290
Cdd:TIGR03819 140 TCLSLRVPRRRTFTLDELVAAGTIPPGVARLLRALVAARLAFLVSGGTGSGKTTLLSALLALVPPDERIVLVEDAAELRP 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 291 QQPHVVRLETRPANIEGRGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVEN 370
Cdd:TIGR03819 220 DHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTLHANSPADVPARLEA 299
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 763053527 371 MVLMSGATFPikAMRQQIASAIDVVIQLERQEDGKRRLVSV 411
Cdd:TIGR03819 300 LGALAGLDRA--ALHSQLAAALDVVLHVRRTPRGRRRVAEI 338
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
238-414 |
1.36e-87 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 265.56 E-value: 1.36e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 238 IALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQPHVVRLETRPANIEGrGEVGQRELV 317
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHPNVVHLLTRPGGGEK-GEVTMADLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 318 RNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVENMVLMSGATFPIKAMRQQIASAIDVVIQ 397
Cdd:cd01130 80 KAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIASAIDVIVH 159
|
170
....*....|....*..
gi 763053527 398 LERQEDGKRRLVSVQEI 414
Cdd:cd01130 160 VKRLGDGVRRVTEIYEV 176
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
61-421 |
7.86e-78 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 250.38 E-value: 7.86e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 61 REKTYQQLLKVMDLSLLDSLEQAEAVRQIRDICQRLLDEHSAPVSSASRQLIIKQITDEVLGLGPLEPLLADHTVSDILV 140
Cdd:COG0630 99 ELLEEEERLLEELLLLEEEDALEDLEVLLLRELDSLLKDYKIKVSEERLEKLLYYLLRDFVGYGKLDPLMRDPNIEDISC 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 141 NGHDS-VYVE--RFGKLqRTDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPP-LAIDGPSISIR 216
Cdd:COG0630 179 NGVGIpVYVYhrDYERI-PTNIVFESEEELDNFVVKLAQRSGKHISVARPIVDATLPDGSRIALTLGPeVSRRGSSFTIR 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 217 RFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQPHVV 296
Cdd:COG0630 258 KFREVPLTPIDLIEWGTLSPELAAYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAKIVTIEDTRELNLPHENWI 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 297 RLETRPANIEGRGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHdGSLTTIHANTARDALGRVENMvlmsg 376
Cdd:COG0630 338 SLVTRESFGGEEGDVTMFDLLKAALRQRPDYIVVGEVRGEEAYTLFQAMATGH-GVLSTFHADSVESAINRLTSP----- 411
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 763053527 377 atfPIKAMRQQIaSAIDVVI---QLERQEDGKRRLVSVQEINGMEGEI 421
Cdd:COG0630 412 ---PINVPRTLL-QALDLVVfqkRVRVGGKRVRRVTSIVEIVGYDPET 455
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
131-411 |
7.35e-70 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 224.92 E-value: 7.35e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 131 ADHTVSDILVNGHDSVYVERFGKLQRTDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPPLAI-D 209
Cdd:TIGR02788 3 DDEDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPACEnD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 210 GPSISIRRFAVDLLNTDSLIQAGALTPAIALL----------------------LKAIVRGRLNVLISGGTGCGKTTMLN 267
Cdd:TIGR02788 83 TVSITIRKPSLVDFSLDDYEEKGFFDTVRAQSgtlsdndeqllelldagdikefLRLAIASRKNIIISGGTGSGKTTFLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 268 VLSSFIPHNERIVTIEDSAELQLQQPHVVRLeTRPANIEGRGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNT 347
Cdd:TIGR02788 163 SLVDEIPKDERIITIEDTREIFLPHPNYVHL-FYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRAVNT 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 763053527 348 GHDGSLTTIHANTARDALGRVENMVLMS--GATFPIKAMRQQIASAIDVVIQLERqEDGKRRLVSV 411
Cdd:TIGR02788 242 GHPGSITTLHAGSPEEAFEQLALMVKSSqaGLGLDFAYIVKLVREVIDIVVQINR-RGGGRKITEV 306
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
132-401 |
1.66e-64 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 209.45 E-value: 1.66e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 132 DHTVSDILVNGHDSVYVERF--GKLQRtDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLK-----DGSRVNAIIP 204
Cdd:pfam00437 9 DEGASDIHVEPPERIVWIRFrvDGVLR-EIPFPDADALARLISRIKVMARLDISERRPPQDGRLPlriggKGVRVRVSTL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 205 PLAIdGPSISIR---RFAVDLlNTDSLIQAGALTPAIALLLKaivRGRLNVLISGGTGCGKTTMLNVLSSFIP-HNERIV 280
Cdd:pfam00437 88 PTAG-GEKLVIRlldPSNVAL-SLDELGMTGAQDEALLEFLR---QPRGNILVTGPTGSGKTTTLYAALGELNtRDENIV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 281 TIEDSAELQLQQPHVVRLETRpaniegrGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDM-LTAMNTGHDGsLTTIHAN 359
Cdd:pfam00437 163 TVEDPVEIQLEGINQVQLNAR-------AGVTFADLLRAILRQDPDRIMVGEIRDLETAEIaLQAANTGHLV-LSTLHTN 234
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 763053527 360 TARDALGRVENMVLmsgatfPIKAMRQQIASAIdvVIQLERQ 401
Cdd:pfam00437 235 SAAGALTRLQDMGV------PPFELASSLLLVI--AQRLVRK 268
|
|
| TrbB_P |
TIGR02782 |
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of ... |
132-419 |
3.04e-63 |
|
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation]
Pssm-ID: 274297 Cd Length: 299 Bit Score: 207.29 E-value: 3.04e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 132 DHTVSDILVNGHDSVYVERFGKLQRTDVRFRDDQhLLNIIDRIVSSLGRRIDESSPLVDARLK-DGSRVNAIIPPLaIDG 210
Cdd:TIGR02782 16 DPGVVEIMLNPDGRLWVERLGSGMSPLGEMSPAD-AQRIIGLVADYLGTEVDRDKPIVEGELPlDGSRFEGLIPPV-VAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 211 PSISIRRFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHN---ERIVTIEDSAE 287
Cdd:TIGR02782 94 PSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNdptDRVVIIEDTRE 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 288 LQLQQPHVVRLETRPANIEgrgevgQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGR 367
Cdd:TIGR02782 174 LQCAAPNVVQLRTSDDAIS------MTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIHANNAKAALDR 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 763053527 368 VENMVLMSGATfPIKAMrqqIASAIDVVIQLERQEDGKRrlvsVQEINGMEG 419
Cdd:TIGR02782 248 LEQLIQEVSVT-PMQTL---IAEAVDLVIFIARTPAGRR----VQEIAKVKG 291
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
137-419 |
1.09e-52 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 180.32 E-value: 1.09e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 137 DILVNGHDSVYVERFGKLQR--TDVRFRDDQhllNIIDRIVSSLGRRIDESSPLVDARLK-DGSRVNAIIPPLaIDGPSI 213
Cdd:PRK13894 37 EIMLNADGKLWQERLGEPMRciGTLRVAQAQ---AIIETIAGYHGKEVTRSKPILEGELPlDGSRFAGQLPPV-VPAPTF 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 214 SIRRFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLN-VLSSFIPH--NERIVTIEDSAELQL 290
Cdd:PRK13894 113 AIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNaIINEMVIQdpTERVFIIEDTGEIQC 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 291 QQPHVVRLETRPaniegrgEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVEN 370
Cdd:PRK13894 193 AAENYVQYHTSI-------DVNMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLKS 265
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 763053527 371 MVLM-SGATFPIKAMrqqIASAIDVVIQLERQEDGKRrlvsVQEINGMEG 419
Cdd:PRK13894 266 LISMhPDAPKPIEPL---IGEAVHVVVHIARTPGGRR----IQEILEVSG 308
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
131-414 |
1.06e-49 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 172.63 E-value: 1.06e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 131 ADHTVSDILVNGHDSVYVERFGKLQRTDVRFRDDQHLLNIIDRIVSSLGRRIDESSPLVDARLKDGSRVNAIIPPLA-ID 209
Cdd:PRK13900 20 AEDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQIVFPPACeIG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 210 GPSISIRRFAVDLLNTDSLIQAGALTPA---------------------IALLLKAIVRGRLNVLISGGTGCGKTTMLNV 268
Cdd:PRK13900 100 QIVYSIRKPSGMQLTLDDYEKMGAFDETateslvdeddvilnellaekkIKEFLEHAVISKKNIIISGGTSTGKTTFTNA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 269 LSSFIPHNERIVTIEDSAELQL-QQPHVVRLETRPANiEGRGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNT 347
Cdd:PRK13900 180 ALREIPAIERLITVEDAREIVLsNHPNRVHLLASKGG-QGRAKVTTQDLIEACLRLRPDRIIVGELRGAEAFSFLRAINT 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 763053527 348 GHDGSLTTIHANTARDALGRVENMVLMSGATFPIKAMRQQIASAIDVVIQLERQEDGKRrlvSVQEI 414
Cdd:PRK13900 259 GHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPDQIKKYILNVVDIVVQLKRGSGGKR---YVSEI 322
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
132-419 |
1.12e-42 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 153.80 E-value: 1.12e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 132 DHTVSDILVNGHDSVYVERFGK-------LQRTDVRFrddqhllnIIDRIVSSLGRRIDESSPLVDARLK-DGSRVNAII 203
Cdd:PRK13833 28 DATVVEIMLNPDGKLFIERLGHgvapageMSAAAAEV--------VIGSVAHALQSEADDERPIISGELPiGGHRFEGLL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 204 PPlAIDGPSISIRRFAVDLLNTDSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTTMLN-VLSSFIPH--NERIV 280
Cdd:PRK13833 100 PP-VVSGPAFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANaVIAEIVASapEDRLV 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 281 TIEDSAELQLQQPHVVRLETRPAniegrgeVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANT 360
Cdd:PRK13833 179 ILEDTAEIQCAAENAVALHTSDT-------VDMARLLKSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSNT 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 763053527 361 ARDALGRVENMVlmsgATFPIKAMRQQIASAIDVVIQLERQEDGKRrlvsVQEINGMEG 419
Cdd:PRK13833 252 AMSALRRLEQLT----AEASQQPMQEVIGEAVDLIVSIERTGKGRR----VREVIHVEG 302
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
132-403 |
2.43e-31 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 123.47 E-value: 2.43e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 132 DHTVSDILVNGHDSVYVERFGKLQRTDVRF-RDDqhlLNIIDRIVSSLGRR-IDESSPLVDARLKDGSRVNAIIPPLAID 209
Cdd:PRK13851 20 DPRTEEVAINRPGEAFVRQAGVFTKFPLPLsYDD---LEDIAILAGALRKQdVGPRNPLCATELPGGERLQICLPPTVPS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 210 GP-SISIRR--------------FAVDLLNT-----------DSLIQAGALTPAIALLLKAIVRGRLNVLISGGTGCGKT 263
Cdd:PRK13851 97 GTvSLTIRRpssrvselkevssrYDASRWNQwqerrkrrdqlDEAILRHYDNGDLEAFLHACVVGRLTMLLCGPTGSGKT 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 264 TMLNVLSSFIPHNERIVTIEDSAELQLQQPHVVRLeTRPANIEGRGEVGQRELVRNSLRMRPDRIVIGEVRGAEALDMLT 343
Cdd:PRK13851 177 TMSKTLISAIPPQERLITIEDTLELVIPHENHVRL-LYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEMRDDAAWAYLS 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 763053527 344 AMNTGHDGSLTTIHANTARDALGRVENMVLMS--GATFPIKAMRQQIASAIDVVIQLERQED 403
Cdd:PRK13851 256 EVVSGHPGSISTIHGANPVQGFKKLFSLVKSSaqGASLEDRTLIDMLATAIDVIVPFRAYGD 317
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
245-396 |
2.16e-23 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 96.69 E-value: 2.16e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 245 IVRGRlNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQLQQP-HVVRLETRPANIEGRGevgqrelVRNSLRM 323
Cdd:cd19477 7 IAIGK-NVIVCGGTGSGKTTYIKSILEFIPKEERIISIEDTEEIVFKHHkNYTQLFFGGNITSADC-------LKSCLRQ 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 763053527 324 RPDRIVIGEVRGAEALDMLTAMNTGHDGSLTTIHANTARDALGRVENMVLMSGATFPIK--AMRQQIASAIDVVI 396
Cdd:cd19477 79 RPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN*SSSNSAARNIKfeSLIEGFKDLIDGIV 153
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
132-414 |
1.30e-17 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 83.99 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 132 DHTVSDILVNGHDSVYVERFGKLQRTDVRFRDDQHLLNIIDRIVSSLGRRIdesspLVDARLKDGS---------RVNAI 202
Cdd:COG2805 14 EQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRER-----LEEEGELDFSyslpglgrfRVNIF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 203 ippLAIDGPSISIRRFAVDLLNTDSLiqagALTPAIALLLKAiVRGrLnVLISGGTGCGKTT----MLNVLSSFIPHNer 278
Cdd:COG2805 89 ---RQRGGVAAVLRLIPSEIPTLEEL----GLPPVLKELAEL-PRG-L-VLVTGPTGSGKSTtlaaMIDYINETRAKH-- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 279 IVTIEDsaelqlqqphvvrletrPanIE-----GRGEVGQREL----------VRNSLRMRPDRIVIGEVRGAEALDM-L 342
Cdd:COG2805 157 IITIED-----------------P--IEfvhkhKKSLINQREVgrdtpsfanaLRAALREDPDVILVGEMRDLETIEAaL 217
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 763053527 343 TAMNTGHdgsL--TTIHANTARDALGRVENMvlmsgatFPI---KAMRQQIASAIDVVI--QLERQEDGKRRlVSVQEI 414
Cdd:COG2805 218 TAAETGH---LvfATLHTNSAAQTIDRIIDV-------FPPeeqAQIRSQLAESLRGVIsqRLLPRADGGGR-VAAREI 285
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
252-371 |
3.01e-15 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 72.90 E-value: 3.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 252 VLISGGTGCGK-TTMLNVLSSFIPHNERIVTIEDSAELQLqqPHVVRLETRPANiegrgEVGQRELVRNSLRMRPDRIVI 330
Cdd:cd01129 14 ILVTGPTGSGKtTTLYAMLRELNGPERNIITIEDPVEYQI--PGINQSQVNEKI-----GLTFADALRAILRQDPDIIMV 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 763053527 331 GEVRgaealDMLTAMN------TGHDgSLTTIHANTARDALGRVENM 371
Cdd:cd01129 87 GEIR-----DAETAEIairaalTGHL-VLSTLHTNDALGAITRLLDM 127
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
252-414 |
4.03e-15 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 74.50 E-value: 4.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 252 VLISGGTGCGKTT----MLNVLSSFIPHNerIVTIEDSAELQLQqphvvrletrpaniEGRGEVGQREL----------V 317
Cdd:cd01131 24 VLVTGPTGSGKSTtlaaMIDYINETRSKH--IITIEDPIEFVHK--------------HKKSLINQREVgrdtesfaaaL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 318 RNSLRMRPDRIVIGEVRGAEALDM-LTAMNTGHDgSLTTIHANTARDALGRVENMvlmsgatFPI---KAMRQQIASAID 393
Cdd:cd01131 88 RAALREDPDVILVGEMRDLETIELaLTAAETGHL-VFSTLHTNSAAQTIDRIIDV-------FPPeqqEQVRIQLASSLR 159
|
170 180
....*....|....*....|...
gi 763053527 394 VVI--QLERQEDGKRRlVSVQEI 414
Cdd:cd01131 160 GVIsqRLLPKKDGGGR-VAAFEI 181
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
252-413 |
1.51e-12 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 65.86 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 252 VLISGGTGCGKTTMLNVLSSFI----PHNERIVTIEDSAELQLQQPHVVRLETRPANIeGRGEVGQRELVRNSLRMRPDR 327
Cdd:cd19516 14 VYVAGATGSGKSTLLAAIYRYIlendPPDRKIITYEDPIEFVYDGIKSKHSIIVQSQI-PRHFKSFAKAVREALRRKPSL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 328 IVIGEVRGAEALD-MLTAMNTGHDgSLTTIHANTARDALGRvenmvLMSgaTFPIK---AMRQQIASAIDVVI--QLERQ 401
Cdd:cd19516 93 IGVGELRDQETISaAVEASLTGHP-VYSTVHTKSVAETIRR-----LIS--LFPPEerdAAAYDLLSTLRFIIvqRLVRT 164
|
170
....*....|..
gi 763053527 402 EDGKRrlVSVQE 413
Cdd:cd19516 165 TDGKR--VAVRE 174
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
240-371 |
1.78e-11 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 64.39 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 240 LLLKAIVRGRLNVLISGGTGCGKTTMLNVLSSFIPHNERIVTIEDSAELQlqQPHVVRLETRPaniegRGEVGQRELVRN 319
Cdd:NF041000 119 LLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLALNKQVITIEDPVEIK--EPNFLQLQVNE-----KAGMTYDTLLKA 191
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 763053527 320 SLRMRPDRIVIGEVRGAEALDM-LTAMNTGHDgSLTTIHANTARDALGRVENM 371
Cdd:NF041000 192 ALRHRPDILIIGEIRDAETAKAaIRAALTGHL-VLSTVHAKSAAGVIYRLLEL 243
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
198-371 |
5.21e-08 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 55.20 E-value: 5.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 198 RVnAIIPplAIDGPSISIRrfavdLLNTDSLI----QAGALTPAIALLLKAIVRGRLNVLISGGTGCGKTT----MLNVL 269
Cdd:COG2804 266 RV-STLP--TVYGEKVVLR-----ILDKSAALldleQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTtlyaALNEL 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 270 SSfiphNER-IVTIEDSAELQLqqPHVVRLETRPaniegrgEVGQR--ELVRNSLRMRPDRIVIGEVRgaealDMLTAM- 345
Cdd:COG2804 338 NT----PERnIITVEDPVEYQL--PGINQVQVNP-------KIGLTfaSALRSILRQDPDVIMVGEIR-----DLETAEi 399
|
170 180 190
....*....|....*....|....*....|.
gi 763053527 346 -----NTGHdGSLTTIHANTARDALGRVENM 371
Cdd:COG2804 400 avqaaLTGH-LVLSTLHTNDAPSAITRLLDM 429
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
251-333 |
7.81e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 763053527 251 NVLISGGTGCGKTTMLNVLSSFI-PHNERIVTIEDSAELQLQQPHVVRLETRPANIEGRGEVGQRELVRNSLRMRPDRIV 329
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELgPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83
|
....
gi 763053527 330 IGEV 333
Cdd:smart00382 84 LDEI 87
|
|
| |
