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Conserved domains on  [gi|759496242|ref|WP_043217073|]
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MULTISPECIES: 50S ribosomal protein L36 [Pseudomonadaceae]

Protein Classification

50S ribosomal protein L36( domain architecture ID 10452018)

50S ribosomal protein L36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0003735|GO:0006412|GO:0005840
PubMed:  27986857

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 3.88e-13

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


:

Pssm-ID: 440027  Cd Length: 38  Bit Score: 55.52  E-value: 3.88e-13
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 759496242  1 MKVRASVKKLCRNCKVIRRDGVVRVICSAEPRHKQRQG 38
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 3.88e-13

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 55.52  E-value: 3.88e-13
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 759496242  1 MKVRASVKKLCRNCKVIRRDGVVRVICSAEPRHKQRQG 38
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-38 2.04e-12

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 53.67  E-value: 2.04e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 759496242   1 MKVRASVKKLCRNCKVIRRDGVVRVICSAEPRHKQRQG 38
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-38 2.47e-11

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.72  E-value: 2.47e-11
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 759496242  1 MKVRASVKKLCRNCKVIRRDGVVRVICsAEPRHKQRQG 38
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG 37
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-38 1.60e-05

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 36.31  E-value: 1.60e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 759496242   1 MKVRASVKKLCRNCKVIRRDGVVRVICSaEPRHKQRQG 38
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37
 
Name Accession Description Interval E-value
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-38 3.88e-13

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 55.52  E-value: 3.88e-13
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 759496242  1 MKVRASVKKLCRNCKVIRRDGVVRVICSAEPRHKQRQG 38
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-38 2.04e-12

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 53.67  E-value: 2.04e-12
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 759496242   1 MKVRASVKKLCRNCKVIRRDGVVRVICSAEPRHKQRQG 38
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-38 2.47e-11

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 50.72  E-value: 2.47e-11
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 759496242  1 MKVRASVKKLCRNCKVIRRDGVVRVICsAEPRHKQRQG 38
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQG 37
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-38 1.60e-05

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 36.31  E-value: 1.60e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 759496242   1 MKVRASVKKLCRNCKVIRRDGVVRVICSaEPRHKQRQG 38
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-38 2.72e-05

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 35.74  E-value: 2.72e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 759496242  1 MKVRASVKKL---CRNCKVIRRDGVVRVICSAEPRHKQRQG 38
Cdd:PRK00831  1 MKVRNSLKSLknrHRDCQVVRRKGRVYVINKKNPRFKARQG 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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