NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|757783355|ref|WP_043001939|]
View 

MULTISPECIES: DUF1656 domain-containing protein [Citrobacter]

Protein Classification

DUF1656 domain-containing protein( domain architecture ID 10545269)

uncharacterized protein belonging to the DUF1656 family with similarity to Escherichia coli YdhI

Gene Ontology:  GO:0016020

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1656 pfam07869
Protein of unknown function (DUF1656); This entry represents a putative component of efflux ...
 10-56 3.07e-05

Protein of unknown function (DUF1656); This entry represents a putative component of efflux pumps that comprise MFP and FUSC proteins. Several members are in an operon with and have similar mutants phenotypes as an RND efflux pump and a fusaric acid resistance-like protein. This system is involved in transporting diverse substrates including 4-hydroxybenzoate and octanoate.


:

Pssm-ID: 429704  Cd Length: 56  Bit Score: 37.03  E-value: 3.07e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 757783355  10 ASVYFPPLFKAFALGFLLWLFIHRLLRERIYSGEIWHPLLMDLSIFA 56
Cdd:pfam07869  5 GGVYVPPLLVLALLALLLTLLLRRLLARLGLYRFVWHPALFDLALFV 51
 
Name Accession Description Interval E-value
DUF1656 pfam07869
Protein of unknown function (DUF1656); This entry represents a putative component of efflux ...
 10-56 3.07e-05

Protein of unknown function (DUF1656); This entry represents a putative component of efflux pumps that comprise MFP and FUSC proteins. Several members are in an operon with and have similar mutants phenotypes as an RND efflux pump and a fusaric acid resistance-like protein. This system is involved in transporting diverse substrates including 4-hydroxybenzoate and octanoate.


Pssm-ID: 429704  Cd Length: 56  Bit Score: 37.03  E-value: 3.07e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 757783355  10 ASVYFPPLFKAFALGFLLWLFIHRLLRERIYSGEIWHPLLMDLSIFA 56
Cdd:pfam07869  5 GGVYVPPLLVLALLALLLTLLLRRLLARLGLYRFVWHPALFDLALFV 51
 
Name Accession Description Interval E-value
DUF1656 pfam07869
Protein of unknown function (DUF1656); This entry represents a putative component of efflux ...
 10-56 3.07e-05

Protein of unknown function (DUF1656); This entry represents a putative component of efflux pumps that comprise MFP and FUSC proteins. Several members are in an operon with and have similar mutants phenotypes as an RND efflux pump and a fusaric acid resistance-like protein. This system is involved in transporting diverse substrates including 4-hydroxybenzoate and octanoate.


Pssm-ID: 429704  Cd Length: 56  Bit Score: 37.03  E-value: 3.07e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 757783355  10 ASVYFPPLFKAFALGFLLWLFIHRLLRERIYSGEIWHPLLMDLSIFA 56
Cdd:pfam07869  5 GGVYVPPLLVLALLALLLTLLLRRLLARLGLYRFVWHPALFDLALFV 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH