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Conserved domains on  [gi|757599604|ref|WP_042847248|]
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MULTISPECIES: type-F conjugative transfer system secretin TraK [Morganellaceae]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TraK super family cl05878
TraK protein; This family consists of several TraK proteins from Escherichia coli, Salmonella ...
106-342 6.23e-18

TraK protein; This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown.


The actual alignment was detected with superfamily member pfam06586:

Pssm-ID: 446824  Cd Length: 228  Bit Score: 81.66  E-value: 6.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  106 SRQDLIVEPGVNTLIPISLGQLNRIVTPFERptvqrlqLTDVKVSVQGNV----------IYVS---TTSTNPVALYIS- 171
Cdd:pfam06586  15 ADQIVTAADGGTVEIRLSASDINRIVLEGDR-------IADVTGSPEGGLavqneettgdAYVKvprTYATKPFSFFVTt 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  172 EKGdesVALSLSLVPQKIAPVQASLMLSRKVGNAPAGAGhaqsagvmyggneakarKWEQKDNYVETIRNILRAVALGDI 251
Cdd:pfam06586  88 EKG---VVYSLTLRPQGIPAETVVLTPPAIRANAALEAP-----------------AAEEETPYEDLLVALTRAMYTDRI 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  252 PPGYAmgnlgsgHSIPNCNFSTGTAQDNIKysFAGGQYIQGSQFSVIVGVAQNTGASTITVDESLCTHPNLAARALWsRN 331
Cdd:pfam06586 148 PDGFS-------VVEVRKEVVLPTEAGGLR--LQRIAEYEGAGLTGEVYRLENVSTSPVTLDEAEFLRPGVLAVAIE-RP 217
                         250
                  ....*....|.
gi 757599604  332 TLQPGQKTEAY 342
Cdd:pfam06586 218 TLAPGETTRVY 228
 
Name Accession Description Interval E-value
TraK pfam06586
TraK protein; This family consists of several TraK proteins from Escherichia coli, Salmonella ...
106-342 6.23e-18

TraK protein; This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown.


Pssm-ID: 429019  Cd Length: 228  Bit Score: 81.66  E-value: 6.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  106 SRQDLIVEPGVNTLIPISLGQLNRIVTPFERptvqrlqLTDVKVSVQGNV----------IYVS---TTSTNPVALYIS- 171
Cdd:pfam06586  15 ADQIVTAADGGTVEIRLSASDINRIVLEGDR-------IADVTGSPEGGLavqneettgdAYVKvprTYATKPFSFFVTt 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  172 EKGdesVALSLSLVPQKIAPVQASLMLSRKVGNAPAGAGhaqsagvmyggneakarKWEQKDNYVETIRNILRAVALGDI 251
Cdd:pfam06586  88 EKG---VVYSLTLRPQGIPAETVVLTPPAIRANAALEAP-----------------AAEEETPYEDLLVALTRAMYTDRI 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  252 PPGYAmgnlgsgHSIPNCNFSTGTAQDNIKysFAGGQYIQGSQFSVIVGVAQNTGASTITVDESLCTHPNLAARALWsRN 331
Cdd:pfam06586 148 PDGFS-------VVEVRKEVVLPTEAGGLR--LQRIAEYEGAGLTGEVYRLENVSTSPVTLDEAEFLRPGVLAVAIE-RP 217
                         250
                  ....*....|.
gi 757599604  332 TLQPGQKTEAY 342
Cdd:pfam06586 218 TLAPGETTRVY 228
PRK13736 PRK13736
conjugal transfer protein TraK; Provisional
112-255 2.35e-05

conjugal transfer protein TraK; Provisional


Pssm-ID: 237486  Cd Length: 245  Bit Score: 45.10  E-value: 2.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604 112 VEPGVNTLIPISLGQLNRIVTPFERPT-VQRLQ--LTDVKVSVQGNVIyVSTTSTNPVALYI-SEKGdesVALSLSLVPQ 187
Cdd:PRK13736  33 MVNGGQASIALSNTSPNLFTVPGDRITaVSSLDgaLTNNEQTASGGVV-LATVNKKPFTFILeTERG---LNLSIQAVPR 108
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757599604 188 KIAPVQASLMLSRKVGNAPAGAghaqsagvmyggneakarkWEQKDNYVETIRNILRAVALGDIPPGY 255
Cdd:PRK13736 109 AGAGRTIQLVSDLRGTGEEAKA-------------------WEESQPYESLLVALSQAVRGGKLPAGY 157
 
Name Accession Description Interval E-value
TraK pfam06586
TraK protein; This family consists of several TraK proteins from Escherichia coli, Salmonella ...
106-342 6.23e-18

TraK protein; This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown.


Pssm-ID: 429019  Cd Length: 228  Bit Score: 81.66  E-value: 6.23e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  106 SRQDLIVEPGVNTLIPISLGQLNRIVTPFERptvqrlqLTDVKVSVQGNV----------IYVS---TTSTNPVALYIS- 171
Cdd:pfam06586  15 ADQIVTAADGGTVEIRLSASDINRIVLEGDR-------IADVTGSPEGGLavqneettgdAYVKvprTYATKPFSFFVTt 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  172 EKGdesVALSLSLVPQKIAPVQASLMLSRKVGNAPAGAGhaqsagvmyggneakarKWEQKDNYVETIRNILRAVALGDI 251
Cdd:pfam06586  88 EKG---VVYSLTLRPQGIPAETVVLTPPAIRANAALEAP-----------------AAEEETPYEDLLVALTRAMYTDRI 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604  252 PPGYAmgnlgsgHSIPNCNFSTGTAQDNIKysFAGGQYIQGSQFSVIVGVAQNTGASTITVDESLCTHPNLAARALWsRN 331
Cdd:pfam06586 148 PDGFS-------VVEVRKEVVLPTEAGGLR--LQRIAEYEGAGLTGEVYRLENVSTSPVTLDEAEFLRPGVLAVAIE-RP 217
                         250
                  ....*....|.
gi 757599604  332 TLQPGQKTEAY 342
Cdd:pfam06586 218 TLAPGETTRVY 228
PRK13736 PRK13736
conjugal transfer protein TraK; Provisional
112-255 2.35e-05

conjugal transfer protein TraK; Provisional


Pssm-ID: 237486  Cd Length: 245  Bit Score: 45.10  E-value: 2.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757599604 112 VEPGVNTLIPISLGQLNRIVTPFERPT-VQRLQ--LTDVKVSVQGNVIyVSTTSTNPVALYI-SEKGdesVALSLSLVPQ 187
Cdd:PRK13736  33 MVNGGQASIALSNTSPNLFTVPGDRITaVSSLDgaLTNNEQTASGGVV-LATVNKKPFTFILeTERG---LNLSIQAVPR 108
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757599604 188 KIAPVQASLMLSRKVGNAPAGAghaqsagvmyggneakarkWEQKDNYVETIRNILRAVALGDIPPGY 255
Cdd:PRK13736 109 AGAGRTIQLVSDLRGTGEEAKA-------------------WEESQPYESLLVALSQAVRGGKLPAGY 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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