|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-805 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1769.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 1 MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 81 GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 161 NRVDLKLVFQEGVSAKIQQINIVGNHAFSTDELISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVEVSGNLAGHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 321 RVQTQPEINDAEKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDT 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 481 DGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRAGLGYVHNDLSNMQPQVAMWRYLDSIGQSASTSS 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSSDS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 561 dDNGFAADDFTFNYGWTYNRLDRGYFPTEGSRVNLNGKVTIPGSDNEFYKLTLDTASYFPIDDDHKWVVLGRTRWGYGDG 640
Cdd:PRK11067 561 -DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 641 IGSKELPFYENFYAGGSSTVRGFQSNNIGPKAVYYGGNDEdNCASRDPKQVCSSDDAVGGNAMAVASLEFITPTPFISDK 720
Cdd:PRK11067 640 LGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQAS-NYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDK 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 721 YANSVRTSFFMDAGTVWDTNWENTAQMRAAGVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 800
Cdd:PRK11067 719 YANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 798
|
....*
gi 757164985 801 IGKTW 805
Cdd:PRK11067 799 IGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-805 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 977.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 24 FVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 104 SVKDDMLKQNLeaSGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIV 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 184 GNHAFSTDELISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 264 DQYKLSGVEVSGNLAGHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYPRVQTQPEINDAEKTVKLHVNVDA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 344 GNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTDTQRVpGSPDQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 424 GSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 504 YTNKSYGVDGTLGFPVNEYNTLRAGLGYVHNDLSNmqpqvamwrYLDSIgQSASTSSDDNGFAADDFTFNYGWTYNRLDR 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD---------DSDSD-SSASYFIKEQGGKFIDSSLSYGWSYDTLDS 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 584 GYFPTEGSRVNLNGKVTIPGSDNEFYKLTLDTASYFPIDDDHKWVVLGRTRWGYGDGIGSKELPFYENFYAGGSSTVRGF 663
Cdd:TIGR03303 548 GYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGF 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 664 QSNNIGPKAVYyggndedncasrdpkqvcSSDDAVGGNAMAVASLEFITPTPFIsdKYANSVRTSFFMDAGTVWDTNWEN 743
Cdd:TIGR03303 628 ESNGIGPRDIN------------------DSGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757164985 744 TaqmraagvPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:TIGR03303 688 E--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-805 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 751.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 26 VKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSV 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 106 KDDMLKQNLeasGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKavVTPlPRNRVDLKLVFQEGVSAKIQQINIVGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 186 HAFSTDELISTFQLRDEVPWWnvvGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQ 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 266 YKLSGVEVSGNLAgHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYPRVQTQPEINDAEKTVKLHVNVDAGN 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 346 RFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTDTQRVPGSPDQVDVVYKVKERNTGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 426 FNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADdaDLSSYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDAS--DYSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 506 NKSYGVDGTLGFPVNEYNTLRAGLGYVHNDLSNMQPqvamwrYLDSIGQSASTSsddngfaaDDFTFNYGWTYNRLDRGY 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS------SPDYLPDQNGSS--------NTSSLGLGLTYDTRDNPL 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 586 FPTEGSRVNLNGKVTIP--GSDNEFYKLTLDTASYFPIDDdhKWVVLGRTRWGYGDGIGsKELPFYENFYAGGSSTVRGF 663
Cdd:COG4775 535 FPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGK--KLVLALRAEAGYLGGYG-KDLPFFERFYLGGFGSLRGY 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 664 QSNNIGPKavyyggndedncasrdpkqvcssddaVGGNAMAVASLEFITPTPFISDkyaNSVRTSFFMDAGTVWDTNwen 743
Cdd:COG4775 612 EENSLGPR--------------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSG--- 659
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757164985 744 taqmraagvpDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:COG4775 660 ----------DDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-801 |
1.15e-112 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 345.50 E-value: 1.15e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 448 NWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRA 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 528 GLGYVHNDLSNMQPQVAMWRYLdsigqsastSSDDNGFAADDFTFNYGWTYNRLDRGYFPTEGSRVNLNGKVTI--PGSD 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYY---------PSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 606 NEFYKLTLDTASYFPIDDDHKWVVLGRTRWGYGDGIGSKELPFYENFYAGGSSTVRGFQSNNIGPKAVyyggndedncas 685
Cdd:pfam01103 152 VSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE------------ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 686 rdpkqvcsSDDAVGGNAMAVASLEFITPTPFISDkyaNSVRTSFFMDAGTVWDTNWENTAQMRaagvpDYSDPGNIRMSA 765
Cdd:pfam01103 220 --------DGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRASV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 757164985 766 GIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNI 801
Cdd:pfam01103 284 GVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11067 |
PRK11067 |
outer membrane protein assembly factor YaeT; Provisional |
1-805 |
0e+00 |
|
outer membrane protein assembly factor YaeT; Provisional
Pssm-ID: 236834 [Multi-domain] Cd Length: 803 Bit Score: 1769.97 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 1 MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
Cdd:PRK11067 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 81 GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
Cdd:PRK11067 81 GNTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 161 NRVDLKLVFQEGVSAKIQQINIVGNHAFSTDELISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
Cdd:PRK11067 161 NRVDLKLVFTEGVSAKIQQINIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVEVSGNLAGHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYP 320
Cdd:PRK11067 241 DSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGNLAGHSAEIEKLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 321 RVQTQPEINDAEKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDT 400
Cdd:PRK11067 321 RVQTQPEINDADKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTV 480
Cdd:PRK11067 401 DTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 481 DGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRAGLGYVHNDLSNMQPQVAMWRYLDSIGQSASTSS 560
Cdd:PRK11067 481 DGVSLGGRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSSDS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 561 dDNGFAADDFTFNYGWTYNRLDRGYFPTEGSRVNLNGKVTIPGSDNEFYKLTLDTASYFPIDDDHKWVVLGRTRWGYGDG 640
Cdd:PRK11067 561 -DNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 641 IGSKELPFYENFYAGGSSTVRGFQSNNIGPKAVYYGGNDEdNCASRDPKQVCSSDDAVGGNAMAVASLEFITPTPFISDK 720
Cdd:PRK11067 640 LGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQAS-NYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDK 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 721 YANSVRTSFFMDAGTVWDTNWENTAQMRAAGVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 800
Cdd:PRK11067 719 YANSVRTSFFWDMGTVWDTNWDNTAYTRAAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFN 798
|
....*
gi 757164985 801 IGKTW 805
Cdd:PRK11067 799 IGKTW 803
|
|
| OM_YaeT |
TIGR03303 |
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ... |
24-805 |
0e+00 |
|
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274514 [Multi-domain] Cd Length: 741 Bit Score: 977.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 24 FVVKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNK 103
Cdd:TIGR03303 1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 104 SVKDDMLKQNLeaSGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAKIQQINIV 183
Cdd:TIGR03303 81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 184 GNHAFSTDELISTFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEG 263
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 264 DQYKLSGVEVSGNLAGHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYPRVQTQPEINDAEKTVKLHVNVDA 343
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLKIKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 344 GNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTDTQRVpGSPDQVDVVYKVKERNT 423
Cdd:TIGR03303 319 GKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQPT 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 424 GSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSS 503
Cdd:TIGR03303 398 GSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFSD 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 504 YTNKSYGVDGTLGFPVNEYNTLRAGLGYVHNDLSNmqpqvamwrYLDSIgQSASTSSDDNGFAADDFTFNYGWTYNRLDR 583
Cdd:TIGR03303 478 YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD---------DSDSD-SSASYFIKEQGGKFIDSSLSYGWSYDTLDS 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 584 GYFPTEGSRVNLNGKVTIPGSDNEFYKLTLDTASYFPIDDDHKWVVLGRTRWGYGDGIGSKELPFYENFYAGGSSTVRGF 663
Cdd:TIGR03303 548 GYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGF 627
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 664 QSNNIGPKAVYyggndedncasrdpkqvcSSDDAVGGNAMAVASLEFITPTPFIsdKYANSVRTSFFMDAGTVWDTNWEN 743
Cdd:TIGR03303 628 ESNGIGPRDIN------------------DSGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757164985 744 TaqmraagvPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:TIGR03303 688 E--------GDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
|
|
| BamA |
COG4775 |
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]; |
26-805 |
0e+00 |
|
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443807 [Multi-domain] Cd Length: 711 Bit Score: 751.15 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 26 VKDIHFEGLQRVAVGAALLSMPVRPGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSV 105
Cdd:COG4775 1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 106 KDDMLKQNLeasGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKavVTPlPRNRVDLKLVFQEGVSAKIQQINIVGN 185
Cdd:COG4775 81 KDEDLKKEL---GLKEGRVFDRALLERAEQELKEQYRSKGYYNAKVT--ITP-ERNRVDLTFEIDEGEKAKIKKINFVGN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 186 HAFSTDELISTFQLRDEVPWWnvvGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQ 265
Cdd:COG4775 155 KAFSDKELRKVLKTKESGWLT---KSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 266 YKLSGVEVSGNLAgHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYPRVQTQPEINDAEKTVKLHVNVDAGN 345
Cdd:COG4775 232 YKVGDIKFEGNLV-DEEELRKLLKIKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEGP 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 346 RFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETVDTDTQRVPGSPDQVDVVYKVKERNTGS 425
Cdd:COG4775 311 RVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTGS 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 426 FNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADdaDLSSYT 505
Cdd:COG4775 391 LSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDAS--DYSSYD 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 506 NKSYGVDGTLGFPVNEYNTLRAGLGYVHNDLSNMQPqvamwrYLDSIGQSASTSsddngfaaDDFTFNYGWTYNRLDRGY 585
Cdd:COG4775 469 LKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVDS------SPDYLPDQNGSS--------NTSSLGLGLTYDTRDNPL 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 586 FPTEGSRVNLNGKVTIP--GSDNEFYKLTLDTASYFPIDDdhKWVVLGRTRWGYGDGIGsKELPFYENFYAGGSSTVRGF 663
Cdd:COG4775 535 FPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGK--KLVLALRAEAGYLGGYG-KDLPFFERFYLGGFGSLRGY 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 664 QSNNIGPKavyyggndedncasrdpkqvcssddaVGGNAMAVASLEFITPTPFISDkyaNSVRTSFFMDAGTVWDTNwen 743
Cdd:COG4775 612 EENSLGPR--------------------------LGGNAYLLGSAELRFPLPLPPS---AGLRGALFVDAGNVWDSG--- 659
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 757164985 744 taqmraagvpDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 805
Cdd:COG4775 660 ----------DDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
|
|
| Omp85 |
pfam01103 |
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ... |
448-801 |
1.15e-112 |
|
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Pssm-ID: 460065 [Multi-domain] Cd Length: 319 Bit Score: 345.50 E-value: 1.15e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 448 NWLGTGYSVGINGTKNDYQTYSEFSVTNPYFTVDGVSLGGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRA 527
Cdd:pfam01103 1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDSDRDSSDSYRITTYGFSVSLGRPITENWSLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 528 GLGYVHNDLSNMQPQVAMWRYLdsigqsastSSDDNGFAADDFTFNYGWTYNRLDRGYFPTEGSRVNLNGKVTI--PGSD 605
Cdd:pfam01103 81 GLGYQHNKILDESGSPNIRNYY---------PSASGTGKSLTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLGGD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 606 NEFYKLTLDTASYFPIDDDHKWVVLGRTRWGYGDGIGSKELPFYENFYAGGSSTVRGFQSNNIGPKAVyyggndedncas 685
Cdd:pfam01103 152 VSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE------------ 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 686 rdpkqvcsSDDAVGGNAMAVASLEFITPTPFISDkyaNSVRTSFFMDAGTVWDTNWENTAQMRaagvpDYSDPGNIRMSA 765
Cdd:pfam01103 220 --------DGDALGGNSYVVASLELRFPLPFVPK---QSVRGVLFFDAGNVWNTGSTDPGSSR-----GARSKAGIRASV 283
|
330 340 350
....*....|....*....|....*....|....*.
gi 757164985 766 GIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNI 801
Cdd:pfam01103 284 GVGLRWLSPLGPLRFDYAFPLKKPDGDETQRFQFGI 319
|
|
| TamA |
COG0729 |
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ... |
244-802 |
4.04e-59 |
|
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440493 [Multi-domain] Cd Length: 574 Bit Score: 210.91 E-value: 4.04e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 244 QVSLTPDKKGIYITVNITEGDQYKLSGVEVSGNLAGHS----AEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAY 319
Cdd:COG0729 79 TIRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGEAAQdparRKLLAAWPLKPGDPLRHGAYEAAKSALLDALRERGYPD 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 320 PRV-QTQPEINDAEKTVKLHVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGYFETV 398
Cdd:COG0729 159 ARFtQSRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSV 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 399 DTDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESGVSFQVGVQQDNWLGTGYSVGINGT--KNDYQTYSEFSVtnP 476
Cdd:COG0729 239 RVTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELElsQPEQSLSADYRI--P 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 477 YFTVDgvslgGRIFYNDFKADDADLSSYTNKSYGVDGTLGFPVNEYNTLRAGLGYvhndlsnmqpqvamwryldsigqsa 556
Cdd:COG0729 317 PLFPL-----GQYLSLGAGLEREDTDDYDSRSLTLGAGRTRRLSDGWTRSLGLRL------------------------- 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 557 STSSDDNGFAADDFTF---NYGWTYNRLDRGYFPTEGSRVNLNGKVTIP--GSDNEFYKLTLDTASYFPIDDdhKWVVLG 631
Cdd:COG0729 367 LYERFTDGDDDRTYTLlspGLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGSWYRPLGE--RHRLAG 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 632 RTRWGYGDGIGSKELPFYENFYAGGSSTVRGFQSNNIGPKAvyyggndedncasrdpkqvcSSDDAVGGNAMAVASLEFI 711
Cdd:COG0729 445 RAELGAILGADFDDVPPSLRFFAGGDGSVRGYGYQSLGPRD--------------------GDGDVIGGRSLAVGSLEYR 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 712 TPtpfISDKYANSVrtsfFMDAGTVWDTNWEntaqmraagvpdysdpGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDG 791
Cdd:COG0729 505 YR---VTENWGLAV----FVDAGNAFNDFPF----------------SDLKVGAGLGLRWYSPVGPIRLDLAYPLNDRDD 561
|
570
....*....|.
gi 757164985 792 DKAeQFQFNIG 802
Cdd:COG0729 562 SSF-RLYISLG 571
|
|
| FhaC |
COG2831 |
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ... |
261-805 |
4.07e-18 |
|
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442079 [Multi-domain] Cd Length: 547 Bit Score: 88.47 E-value: 4.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 261 TEGDQYKLSGVEVSGNLAGHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYPRVQTQP-EINDAEktvkLHV 339
Cdd:COG2831 59 AEGPCFTIKRIRVEGNTVLPEEELQALLAPYLGRCLTLADLNALADAITNLYRDRGYITSRAYLPPqDLSDGV----LRI 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 340 NVDAGnrfYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRLGyfeTVDTDTQRVPGS-PDQVDVVYKV 418
Cdd:COG2831 135 QVVEG---RVGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLP---GVQVTAELRPGTePGTSDLVVTV 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 419 KERNTgsFNFGVG---YGTESGVSFQ--VGVQQDNWLGTGYSVGINGT---KNDYQTYSEFSVTNPYFTvDGVSLGGRIF 490
Cdd:COG2831 209 EEAKP--FRGSLGldnSGSPSTGRYRlgASLSLDNLLGLGDQLSLSYSrslDGDGSRSYSLSYSVPLGY-WGLTLGLSYS 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 491 YNDFK-ADDADLSSYTNKSYGVDGTLGFPV----NEYNTLRAGLGYVHN-------DLSNMQPQVAMWRyldsIGQSAST 558
Cdd:COG2831 286 RYRSRvGGPFGTLDISGKSQTYGLRLSYPLirsrDQKLSLSLGLDYKDSrnyllgtEIEVQRRRLSVLR----LGLSYTR 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 559 SSDDNGFAADdFTFNYGwtynrldRGYFpteGSRVNLNgkvTIPGSDNEFYKLTLDTASYFPIDDDHKWVVLGRTRWGyg 638
Cdd:COG2831 362 RLGGGVLSLS-LSFSQG-------LDWL---GATPAPD---ASRGPDGRFTKLRLSASRVQPLPQDFSLLLRLDGQYS-- 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 639 dgigSKELPFYENFYAGGSSTVRGFQSNNIgpkavyyggndedncasrdpkqvcSSDDAVggnamaVASLEFITPTPfiS 718
Cdd:COG2831 426 ----SDPLLSSEQFSLGGRYSVRGYDEGEL------------------------SGDNGW------YLSNELRWPLP--R 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 719 DKYANSVRTSFFMDAGTVWdtnwentaqmRAAGVPDYSDPGNIrMSAGIALQWmSPLGPLV--FSYAQPFKKYDGDKAE- 795
Cdd:COG2831 470 LSLLGGLQLYAFLDAGRVW----------NNSALPGQLNGRTL-AGAGLGLRL-SLGKNLSldLDYARPLGDPDGDTDNr 537
|
570
....*....|
gi 757164985 796 QFQFNIGKTW 805
Cdd:COG2831 538 RLYFSLSYSF 547
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
267-344 |
9.21e-16 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 72.76 E-value: 9.21e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757164985 267 KLSGVEVSGNLAGHSAEIESLTKIQPGDLYSGSKVTKMEDSIKKLLGRYGYAYPRVQTQPEINDAEKTVKLHVNVDAG 344
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
176-263 |
9.76e-16 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 72.76 E-value: 9.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 176 KIQQINIVGNHAFSTDELISTFQLRdevpwwnvVGDrKYQKQKLAGDLETLRSYYLDRGYARFNIdSTQVSLTPDKKGIY 255
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLK--------EGD-VYNREKLEEDKEALKDRYGRLGYFDASV-STNVEIDDEVNTVD 70
|
....*...
gi 757164985 256 ITVNITEG 263
Cdd:pfam07244 71 LTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
348-421 |
1.44e-12 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 63.51 E-value: 1.44e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 757164985 348 YVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKE----RLNRLGYFETVDTDTQRVPGSPDQVDVVYKVKER 421
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNREKLEEDKEalkdRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
|
|
| POTRA |
pfam07244 |
Surface antigen variable number repeat; This family is found primarily in bacterial surface ... |
93-172 |
1.97e-11 |
|
Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Pssm-ID: 462121 [Multi-domain] Cd Length: 78 Bit Score: 60.43 E-value: 1.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 93 TIASITFSGNKSVKDDMLKQNLeasGVRVGESLDRTTLADIEKGLEDFYYSVGKYSASVKAVVT-PLPRNRVDLKLVFQE 171
Cdd:pfam07244 1 KIGDINFEGNKKTKDEELRRLL---GLKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEiDDEVNTVDLTFNVDE 77
|
.
gi 757164985 172 G 172
Cdd:pfam07244 78 G 78
|
|
| FtsQ |
COG1589 |
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ... |
6-102 |
3.22e-04 |
|
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441197 [Multi-domain] Cd Length: 241 Bit Score: 43.09 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 6 LLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRPGD---TVNDEDISNTIRALfatGNFEDVRVLRD-G 81
Cdd:COG1589 22 LLLLLLALLVWLLLFSPLFPVREVEVEGNSHVSAEEIRAALGILLGGnlfTLDLDAIRERLEAL---PWVKSASVRRRwP 98
|
90 100
....*....|....*....|.
gi 757164985 82 DTLLVQVKERPTIASITFSGN 102
Cdd:COG1589 99 DTLVIEVTEREPVARWNTGGG 119
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
412-629 |
8.57e-04 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 42.92 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 412 VDVVYKvKERNTGSFNFGVGYGTESG----VSFQVGVQQDNWlgtGYSVGINGTKNDYqtysefsvtnpyftvdgvslgg 487
Cdd:COG4771 149 INIITK-KPTDELEGSVSLGYGSNGNgtysGSLSLGGPGDKL---SFLLSGSYRDRDG---------------------- 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 757164985 488 riFYNDFKADDADLSSYTNKSYGvdGTLGFPVNEYNTLRAGLGYVHNDLSNMQPQVAMWRYLDSIGQSASTSSDDNGFAA 567
Cdd:COG4771 203 --YLDYRNGGFVGNSGYERYNLN--AKLGYRLSDNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTTTDRGNYSL 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 757164985 568 -------DDFTFNYGWTYNRLDRGYFPTEGSRVNlngkvtipGSDNEFYKLTLDTASYFPIDDDHKWVV 629
Cdd:COG4771 279 ryngdlgDNLDLSLYYSRTDRDSTNGSLGGSTGS--------FSDSDDTTYGLELDLTYPLGGNHTLTL 339
|
|
| |
