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Conserved domains on  [gi|754511608|ref|WP_041922271|]
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MULTISPECIES: YfhL family 4Fe-4S dicluster ferredoxin [Serratia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 1.03e-51

YfhL family 4Fe-4S dicluster ferredoxin;


:

Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 156.10  E-value: 1.03e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECVGHYDTPTCQQVCPIDnTIITDPQHRETNEQLWDKFVVL 80
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPVD-CIIPDPDHVETQEQLMEKYERL 79
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 1.03e-51

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 156.10  E-value: 1.03e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECVGHYDTPTCQQVCPIDnTIITDPQHRETNEQLWDKFVVL 80
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPVD-CIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-55 1.34e-11

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 54.35  E-value: 1.34e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:COG2768   5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCP 53
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 8-57 2.35e-06

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 42.02  E-value: 2.35e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608    8 RCINCDMCEPECPNQAISMGDE----------IYQIDTDRCTECvghydtPTCQQVCPID 57
Cdd:TIGR01971  44 KCIGCTLCAAVCPADAIRVVPAegedgkrrlkFYEINFGRCIFC------GLCEEACPTD 97
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 2.58e-06

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 43.38  E-value: 2.58e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 754511608   9 CINCDMCEPECPNQAISMGDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCP 255
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-57 6.67e-06

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 41.23  E-value: 6.67e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 754511608   8 RCINCDMCEPECPNQAISMGDEI-YQIDTDRCTECvghydtPTCQQVCPID 57
Cdd:cd10549   79 KCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCPVN 123
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-55 1.89e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 35.58  E-value: 1.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 754511608   9 CINCDMCEPECPNQAISM-------GDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:pfam12838  1 CIGCGACVAACPVGAITLdevgekkGTKTVVIDPERCVGC------GACVAVCP 48
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 5-55 4.39e-03

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 34.06  E-value: 4.39e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 754511608   5 ITKRCINCDMCEPECPNQAISMGDE--IYQidtDRCTECVGhydtptCQQVCP 55
Cdd:NF038196 183 VTDKCIGCGICAKVCPVNNIEMEDGkpVWG---HNCTHCLA------CIHRCP 226
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 1.03e-51

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 156.10  E-value: 1.03e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECVGHYDTPTCQQVCPIDnTIITDPQHRETNEQLWDKFVVL 80
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPVD-CIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-55 1.34e-11

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 54.35  E-value: 1.34e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:COG2768   5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCP 53
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 6-57 6.57e-09

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 47.43  E-value: 6.57e-09
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 754511608  6 TKRCINCDMCEPECPNQAISMGDE----IYQIDTDRCTECVghydtpTCQQVCPID 57
Cdd:COG1143   1 EDKCIGCGLCVRVCPVDAITIEDGepgkVYVIDPDKCIGCG------LCVEVCPTG 50
NapF COG1145
Ferredoxin [Energy production and conversion];
6-57 3.93e-07

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 45.48  E-value: 3.93e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 754511608   6 TKRCINCDMCEPECPNQAISMGDE--IYQIDTDRCTECVGhydtptCQQVCPID 57
Cdd:COG1145  181 AEKCIGCGLCVKVCPTGAIRLKDGkpQIVVDPDKCIGCGA------CVKVCPVG 228
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 5-57 8.03e-07

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 42.34  E-value: 8.03e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 754511608  5 ITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECVghydtpTCQQVCPID 57
Cdd:COG4231  20 DEDKCTGCGACVKVCPADAIEEGDGKAVIDPDLCIGCG------SCVQVCPVD 66
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 8-55 2.05e-06

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 41.19  E-value: 2.05e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 754511608  8 RCINCDMCEPECPNQAISMGDEIYQIDTDRCTECvGHydtptCQQVCP 55
Cdd:COG2221  16 KCIGCGLCVAVCPTGAISLDDGKLVIDEEKCIGC-GA-----CIRVCP 57
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 8-57 2.35e-06

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 42.02  E-value: 2.35e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608    8 RCINCDMCEPECPNQAISMGDE----------IYQIDTDRCTECvghydtPTCQQVCPID 57
Cdd:TIGR01971  44 KCIGCTLCAAVCPADAIRVVPAegedgkrrlkFYEINFGRCIFC------GLCEEACPTD 97
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 2.58e-06

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 43.38  E-value: 2.58e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 754511608   9 CINCDMCEPECPNQAISMGDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCP 255
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 4-55 4.65e-06

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 40.42  E-value: 4.65e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 754511608  4 LITKRCINCDMCEPECPNQAISMGDE-IYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:COG1144  27 VDEDKCIGCGLCWIVCPDGAIRVDDGkYYGIDYDYCKGC------GICAEVCP 73
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-57 6.67e-06

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 41.23  E-value: 6.67e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 754511608   8 RCINCDMCEPECPNQAISMGDEI-YQIDTDRCTECvghydtPTCQQVCPID 57
Cdd:cd10549   79 KCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCPVN 123
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
8-55 7.52e-06

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 41.94  E-value: 7.52e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 754511608   8 RCINCDMCEPECPNQAISMGDEIYQIDTDRCTECvGHydtptCQQVCP 55
Cdd:COG4624   92 KCKNCYPCVRACPVKAIKVDDGKAEIDEEKCISC-GQ-----CVAVCP 133
PRK13795 PRK13795
hypothetical protein; Provisional
 8-56 1.17e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 41.52  E-value: 1.17e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 754511608   8 RCINCDMCEPECPNQAISMGDEIYQI--DTDRCTECVghydtpTCQQVCPI 56
Cdd:PRK13795 582 ECVGCGVCVGACPTGAIRIEEGKRKIsvDEEKCIHCG------KCTEVCPV 626
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-55 2.52e-05

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 38.17  E-value: 2.52e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDE-IYQIDTDRCTECVGhydtptCQQVCP 55
Cdd:COG1149   5 IPVIDEEKCIGCGLCVEVCPEGAIKLDDGgAPVVDPDLCTGCGA------CVGVCP 54
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
8-57 4.66e-05

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 39.09  E-value: 4.66e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608   8 RCINCDMCEPECPNQAISM-GDE---------IYQIDTDRCTECvgHYdtptCQQVCPID 57
Cdd:PRK05888  59 RCIACKLCAAICPADAITIeAAEredgrrrttRYDINFGRCIFC--GF----CEEACPTD 112
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
8-55 8.15e-05

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 39.07  E-value: 8.15e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 754511608   8 RCINCDMCEPECPNQAISMGDE-IYQIDTDRCTECvGhydtpTCQQVCP 55
Cdd:COG1148  497 KCTGCGRCVEVCPYGAISIDEKgVAEVNPALCKGC-G-----TCAAACP 539
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
4-55 1.29e-04

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 37.71  E-value: 1.29e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 754511608   4 LITKRCINCDMCEPECPNQAISMGDEIYQIDTDRCTECVGHYDTPTCQQVCP 55
Cdd:COG1142   78 VDEEKCIGCGLCVLACPFGAITMVGEKSRAVAVKCDLCGGREGGPACVEACP 129
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-55 1.89e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 35.58  E-value: 1.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 754511608   9 CINCDMCEPECPNQAISM-------GDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:pfam12838  1 CIGCGACVAACPVGAITLdevgekkGTKTVVIDPERCVGC------GACVAVCP 48
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-55 2.23e-04

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 35.84  E-value: 2.23e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 754511608  1 MALLITKRCINCDMCEPECPNQAISMGDE---IYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:COG1146   2 MPVIDTDKCIGCGACVEVCPVDVLELDEEgkkALVINPEECIGC------GACELVCP 53
PRK08318 PRK08318
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;
8-60 4.82e-04

NAD-dependent dihydropyrimidine dehydrogenase subunit PreA;


Pssm-ID: 236237 [Multi-domain]  Cd Length: 420  Bit Score: 36.85  E-value: 4.82e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 754511608   8 RCINCDMCEPECPN---QAISM---GDEIYQIDTDRCTECvghydtPTCQQVCPIDNTI 60
Cdd:PRK08318 343 KCIGCGRCYIACEDtshQAIEWdedGTRTPEVIEEECVGC------NLCAHVCPVEGCI 395
DMSOR_beta_like cd16367
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 2-65 5.47e-04

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319889 [Multi-domain]  Cd Length: 138  Bit Score: 36.13  E-value: 5.47e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 754511608   2 ALLITKRCINCDMCEPECPNQAISMGDEIyqidtdRCTECVGHYDtPTCQQVCPIDNTIITDPQ 65
Cdd:cd16367   81 EVVISDACCGCGNCASACPYGAIQMVRAV------KCDLCAGYAG-PACVSACPTGAAIRVNPE 137
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 5-63 2.12e-03

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 34.86  E-value: 2.12e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 754511608   5 ITKRCINCDMCEPECPNQAISM-GDEIYQIDTDRCTECvghydtPTCQQVCPIDNTIITD 63
Cdd:PRK00783 167 VSEDCDECEKCVEACPRGVLELkEGKLVVTDLLNCSLC------KLCERACPGKAIRVSD 220
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 9-55 2.16e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 34.85  E-value: 2.16e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 754511608   9 CINCDMCEPECPNQAIS---MGDEiYQIDTDRCTECvgHydtpTCQQVCP 55
Cdd:PRK12771 512 CFECDNCYGACPQDAIIklgPGRR-YHFDYDKCTGC--H----ICADVCP 554
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
9-56 2.59e-03

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 34.25  E-value: 2.59e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 754511608   9 CINCDM--CEPECPNQAISMGDEIYQIDTDRCTECVghydtpTCQQVCPI 56
Cdd:COG1142   52 CRHCEDapCAEVCPVGAITRDDGAVVVDEEKCIGCG------LCVLACPF 95
PRK12387 PRK12387
formate hydrogenlyase complex iron-sulfur subunit; Provisional
 8-55 3.76e-03

formate hydrogenlyase complex iron-sulfur subunit; Provisional


Pssm-ID: 183492 [Multi-domain]  Cd Length: 180  Bit Score: 34.24  E-value: 3.76e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 754511608   8 RCINCDMCEPECPNQAISM------GDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:PRK12387  39 QCIGCAACVNACPSNALTVetdlatGELAWEFNLGRCIFC------GRCEEVCP 86
ferrodoxin_EFR1 NF038196
EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight ...
 5-55 4.39e-03

EFR1 family ferrodoxin; Members of the family have a C-terminal ferrodoxin domain, with eight conserved Cys residues in two CxxCxxCxxxCP motifs, each of which binds a 4Fe-4S cluster. The N-terminal region resembles flavodoxin domains, with some members of the family recognized by Pfam models PF12724 (Flavodoxin_5) or PF00258 (Flavodoxin_1).


Pssm-ID: 468407 [Multi-domain]  Cd Length: 243  Bit Score: 34.06  E-value: 4.39e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 754511608   5 ITKRCINCDMCEPECPNQAISMGDE--IYQidtDRCTECVGhydtptCQQVCP 55
Cdd:NF038196 183 VTDKCIGCGICAKVCPVNNIEMEDGkpVWG---HNCTHCLA------CIHRCP 226
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 6.98e-03

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 33.37  E-value: 6.98e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 754511608   9 CINCDMCEPECPNQAISMGDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:PRK07118 141 CLGLGSCVAACPFDAIHIENGLPVVDEDKCTGC------GACVKACP 181
porD PRK09625
pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
 9-55 7.43e-03

pyruvate flavodoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 236596 [Multi-domain]  Cd Length: 133  Bit Score: 33.18  E-value: 7.43e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 754511608   9 CINCDMCEPECPNQAI-SMGDEIYQIDTDRCTECvghydtPTCQQVCP 55
Cdd:PRK09625  61 CINCFNCWVYCPDAAIlSRDKKLKGVDYSHCKGC------GVCVEVCP 102
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 4-55 8.34e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 33.46  E-value: 8.34e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 754511608   4 LITKRCINCDMCEPECPNQAISMGDEIYQidtdRCTECVGHYD-TPTCQQVCP 55
Cdd:PRK12809  82 LDEQKCIGCKRCAIACPFGVVEMVDTIAQ----KCDLCNQRSSgTQACIEVCP 130
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 7-57 8.82e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 32.75  E-value: 8.82e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 754511608   7 KRCINCDMCEPECPNQAISMGDEI-----YQIDTDRCTECvghydtPTCQQVCPID 57
Cdd:cd10549    6 EKCIGCGICVKACPTDAIELGPNGaiargPEIDEDKCVFC------GACVEVCPTG 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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