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Conserved domains on  [gi|753796988|ref|WP_041552631|]
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Fur family transcriptional regulator [Cellvibrio japonicus]

Protein Classification

Fur family transcriptional regulator( domain architecture ID 10002362)

Fur (ferric uptake regulator) family transcriptional regulator such as metal ion uptake regulator proteins, which are responsible for controlling the intracellular concentration of iron in many bacteria

CATH:  3.30.1490.190|1.10.10.10
Gene Ontology:  GO:0006355|GO:0003700|GO:0003677|GO:0046872
PubMed:  17216355|24106689

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fur COG0735
Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];
19-159 1.62e-40

Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];


:

Pssm-ID: 440498  Cd Length: 140  Bit Score: 133.15  E-value: 1.62e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  19 DALADARDLCASRGVRLTDLRLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA-- 96
Cdd:COG0735    2 EALEEAEELLREAGLRLTPQRLAILELLLESDRHLSAEEIYEALRKKGPS-ISLATVYRTLDLLVEAGLVHRIEFGGGka 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 753796988  97 -FIGCPSPRHHHqsyfLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGICGQCSK 159
Cdd:COG0735   81 rYELNEGDHHHH----LICTKCGKVIELDDDEIEELLEELAEPHGFEIESHELEIYGLCPDCQK 140
 
Name Accession Description Interval E-value
Fur COG0735
Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];
19-159 1.62e-40

Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];


Pssm-ID: 440498  Cd Length: 140  Bit Score: 133.15  E-value: 1.62e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  19 DALADARDLCASRGVRLTDLRLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA-- 96
Cdd:COG0735    2 EALEEAEELLREAGLRLTPQRLAILELLLESDRHLSAEEIYEALRKKGPS-ISLATVYRTLDLLVEAGLVHRIEFGGGka 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 753796988  97 -FIGCPSPRHHHqsyfLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGICGQCSK 159
Cdd:COG0735   81 rYELNEGDHHHH----LICTKCGKVIELDDDEIEELLEELAEPHGFEIESHELEIYGLCPDCQK 140
PRK11639 PRK11639
zinc uptake transcriptional repressor Zur;
21-158 1.36e-33

zinc uptake transcriptional repressor Zur;


Pssm-ID: 183251  Cd Length: 169  Bit Score: 116.40  E-value: 1.36e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  21 LADARDLCASRGVRLTDLRLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNAFIGC 100
Cdd:PRK11639  10 LAQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQ-AKPPTVYRALDFLLEQGFVHKVESTNSYVLC 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753796988 101 psprHH-----HQSYFLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGICGQCS 158
Cdd:PRK11639  89 ----HLfdqptHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACV 147
Fur_like cd07153
Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, ...
 39-154 1.25e-24

Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.


Pssm-ID: 133478 [Multi-domain]  Cd Length: 116  Bit Score: 91.87  E-value: 1.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  39 RLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA---FIGCPSPRHHHqsyfLICR 115
Cdd:cd07153    3 RLAILEVLLESDGHLTAEEIYERLRKKGPS-ISLATVYRTLELLEEAGLVREIELGDGkarYELNTDEHHHH----LICT 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 753796988 116 VCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGIC 154
Cdd:cd07153   78 KCGKVIDFEDCPLEELLEELAAKTGFKITSHRLELYGIC 116
FUR pfam01475
Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that ...
 30-150 4.07e-10

Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.


Pssm-ID: 426280  Cd Length: 121  Bit Score: 54.56  E-value: 4.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988   30 SRGVRLTDLRLQVLELIWQSHKP-LGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA---FIGCPSPRH 105
Cdd:pfam01475   1 EAGLKLTPQRLKILEVLQKSDKEhLSAEEIYKELREEDPN-ISLATVYRTLNLLEEAGLVKRLEFDGGesrFELNTGHHH 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 753796988  106 HHqsyfLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEV 150
Cdd:pfam01475  80 DH----LICEDCGKVIEFKDDEIEKRQEEIAKKHGFKLVSHRLEL 120
 
Name Accession Description Interval E-value
Fur COG0735
Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];
19-159 1.62e-40

Fe2+ or Zn2+ uptake regulation protein Fur/Zur [Inorganic ion transport and metabolism];


Pssm-ID: 440498  Cd Length: 140  Bit Score: 133.15  E-value: 1.62e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  19 DALADARDLCASRGVRLTDLRLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA-- 96
Cdd:COG0735    2 EALEEAEELLREAGLRLTPQRLAILELLLESDRHLSAEEIYEALRKKGPS-ISLATVYRTLDLLVEAGLVHRIEFGGGka 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 753796988  97 -FIGCPSPRHHHqsyfLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGICGQCSK 159
Cdd:COG0735   81 rYELNEGDHHHH----LICTKCGKVIELDDDEIEELLEELAEPHGFEIESHELEIYGLCPDCQK 140
PRK11639 PRK11639
zinc uptake transcriptional repressor Zur;
21-158 1.36e-33

zinc uptake transcriptional repressor Zur;


Pssm-ID: 183251  Cd Length: 169  Bit Score: 116.40  E-value: 1.36e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  21 LADARDLCASRGVRLTDLRLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNAFIGC 100
Cdd:PRK11639  10 LAQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQ-AKPPTVYRALDFLLEQGFVHKVESTNSYVLC 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 753796988 101 psprHH-----HQSYFLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGICGQCS 158
Cdd:PRK11639  89 ----HLfdqptHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACV 147
Fur_like cd07153
Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, ...
 39-154 1.25e-24

Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.


Pssm-ID: 133478 [Multi-domain]  Cd Length: 116  Bit Score: 91.87  E-value: 1.25e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988  39 RLQVLELIWQSHKPLGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA---FIGCPSPRHHHqsyfLICR 115
Cdd:cd07153    3 RLAILEVLLESDGHLTAEEIYERLRKKGPS-ISLATVYRTLELLEEAGLVREIELGDGkarYELNTDEHHHH----LICT 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 753796988 116 VCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEVMGIC 154
Cdd:cd07153   78 KCGKVIDFEDCPLEELLEELAAKTGFKITSHRLELYGIC 116
FUR pfam01475
Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that ...
 30-150 4.07e-10

Ferric uptake regulator family; This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.


Pssm-ID: 426280  Cd Length: 121  Bit Score: 54.56  E-value: 4.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 753796988   30 SRGVRLTDLRLQVLELIWQSHKP-LGAYSLMEMLAAASTRrVAPPTVYRALDFLLEQGLIHRINALNA---FIGCPSPRH 105
Cdd:pfam01475   1 EAGLKLTPQRLKILEVLQKSDKEhLSAEEIYKELREEDPN-ISLATVYRTLNLLEEAGLVKRLEFDGGesrFELNTGHHH 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 753796988  106 HHqsyfLICRVCGNAAELDNPNLSATIEASAEAAGFSVQTQSLEV 150
Cdd:pfam01475  80 DH----LICEDCGKVIEFKDDEIEKRQEEIAKKHGFKLVSHRLEL 120
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
30-88 2.54e-05

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 41.08  E-value: 2.54e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 753796988  30 SRGVRLTDLRLQVLELIwqSHKPLGAYSLMEMLAAAS--TRRVAPPTVYRALDFLLEQGLI 88
Cdd:COG1695    2 KRQLRKGTLELLILALL--AEGPMYGYEIIKELEERSggFWKVSEGTLYPALKRLEKEGLV 60
CopY COG3682
Transcriptional regulator, CopY/TcrY family [Transcription];
34-98 2.56e-04

Transcriptional regulator, CopY/TcrY family [Transcription];


Pssm-ID: 442898  Cd Length: 125  Bit Score: 38.61  E-value: 2.56e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 753796988  34 RLTDLRLQVLELIWQsHKPLGAYSLMEMLAAasTRRVAPPTVYRALDFLLEQGLIHRINALNAFI 98
Cdd:COG3682    4 KLTEAELEVMQVLWE-LGPATVREVLEALPE--ERGWAYTTVLTLLRRLEEKGFLSREKEGRAYV 65
Penicillinase_R pfam03965
Penicillinase repressor; The penicillinase repressor negatively regulates expression of the ...
 35-101 7.62e-03

Penicillinase repressor; The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.


Pssm-ID: 427620  Cd Length: 115  Bit Score: 34.50  E-value: 7.62e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 753796988   35 LTDLRLQVLELIWqSHKPLGAYSLMEMLAAasTRRVAPPTVYRALDFLLEQGLIHRINALNAFIGCP 101
Cdd:pfam03965   1 LGEAEAEVMEILW-ALGPATVKEVVEELPE--PKDWAYSTVKTLLTRLVKKGLLSREKDGRAFIYSP 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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