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Conserved domains on  [gi|752542716|ref|WP_041214156|]
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MULTISPECIES: Rho-binding antiterminator [Aeromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
3-83 1.54e-22

Transcriptional antiterminator Rof (Rho-off) [Transcription];


:

Pssm-ID: 443625  Cd Length: 87  Bit Score: 82.66  E-value: 1.54e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752542716  3 DYQPVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDGVEYLLLE---RAERLSLADLATLELVWQGEE-KRI 78
Cdd:COG4568   3 EYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLEtdgETRELRLDHIASFSALELGPHfSTV 82


                ....*
gi 752542716 79 HFAPP 83
Cdd:COG4568  83 VFSPS 87
 
Name Accession Description Interval E-value
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
3-83 1.54e-22

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 82.66  E-value: 1.54e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752542716  3 DYQPVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDGVEYLLLE---RAERLSLADLATLELVWQGEE-KRI 78
Cdd:COG4568   3 EYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLEtdgETRELRLDHIASFSALELGPHfSTV 82


                ....*
gi 752542716 79 HFAPP 83
Cdd:COG4568  83 VFSPS 87
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 6-68 7.58e-09

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 47.58  E-value: 7.58e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 752542716   6 PVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDG-VEYLLLERA---ERLSLADLATLE 68
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRADkEEYLVIETEgeeQELRLDQLVSIS 67
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
 4-56 8.96e-07

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 42.39  E-value: 8.96e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 752542716  4 YQPVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDGVEYLLLERA 56
Cdd:PRK11625  5 YQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAA 57
 
Name Accession Description Interval E-value
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
3-83 1.54e-22

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 82.66  E-value: 1.54e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 752542716  3 DYQPVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDGVEYLLLE---RAERLSLADLATLELVWQGEE-KRI 78
Cdd:COG4568   3 EYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLEtdgETRELRLDHIASFSALELGPHfSTV 82


                ....*
gi 752542716 79 HFAPP 83
Cdd:COG4568  83 VFSPS 87
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 6-68 7.58e-09

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 47.58  E-value: 7.58e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 752542716   6 PVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDG-VEYLLLERA---ERLSLADLATLE 68
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRADkEEYLVIETEgeeQELRLDQLVSIS 67
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
 4-56 8.96e-07

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 42.39  E-value: 8.96e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 752542716  4 YQPVSCDLYDWLEIAASWQLPVTITDRDGRTWADRIRTIEASDGVEYLLLERA 56
Cdd:PRK11625  5 YQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAA 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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