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Conserved domains on  [gi|750096528|ref|WP_040401211|]
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ABC transporter permease [Amorphus coralli]

Protein Classification

ABC transporter permease( domain architecture ID 10003093)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-272 1.27e-84

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


:

Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 254.69  E-value: 1.27e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   1 MSPALAWLTAFMVVPCLLVLALAFFRRGIYGGIEYTFTFETIALVF-DPLYASIFLKSAVIAGLAGLIASVIGYAAAYAI 79
Cdd:COG1176   15 LLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  80 ASMPARHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACY 159
Cdd:COG1176   95 ARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLY 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 160 APLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDW 239
Cdd:COG1176  175 AALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNW 254

                        250       260       270
                 ....*....|....*....|....*....|...
gi 750096528 240 PFGAALSMVLIAIMMGLLTLQTFVTERASGARA 272
Cdd:COG1176  255 PLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-272 1.27e-84

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 254.69  E-value: 1.27e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   1 MSPALAWLTAFMVVPCLLVLALAFFRRGIYGGIEYTFTFETIALVF-DPLYASIFLKSAVIAGLAGLIASVIGYAAAYAI 79
Cdd:COG1176   15 LLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  80 ASMPARHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACY 159
Cdd:COG1176   95 ARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLY 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 160 APLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDW 239
Cdd:COG1176  175 AALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNW 254

                        250       260       270
                 ....*....|....*....|....*....|...
gi 750096528 240 PFGAALSMVLIAIMMGLLTLQTFVTERASGARA 272
Cdd:COG1176  255 PLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-257 2.00e-57

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 185.28  E-value: 2.00e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   5 LAWLTAFMVVPCLLVLALAFFRRGIYGGIEYTFTFETIALVFDPLYASIFLKSAVIAGLAGLIASVIGYAAAYAIASMPA 84
Cdd:PRK09497  16 VGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPH 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  85 RHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACYAPLSR 164
Cdd:PRK09497  96 KVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEK 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 165 LNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAA 244
Cdd:PRK09497 176 LDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAA 255

                        250
                 ....*....|...
gi 750096528 245 LSMVLIAIMMGLL 257
Cdd:PRK09497 256 TSITLTIVMGLML 268
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 107-266 1.37e-12

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 64.96  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  107 YAWIVLLNREGLITAIARGLGYdgelpRLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRR 186
Cdd:TIGR02141  53 FYLLIAFGPNGPIGKLLELFGI-----SLVFTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLK 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  187 ITLPMTAPGIATGFVFVFVLSIGNFVTPALLGG---GQFQMIGNLVYAQFltANDWPFGAALSMVLIAIMMGLLTLQTFV 263
Cdd:TIGR02141 128 VTLPLAFPGLLAGAVLSFARALGEFGATLMFAGnipGETQTIPLAIYDAV--ESDYELAHQLSLVLLAISLIVLLLVELL 205


                  ...
gi 750096528  264 TER 266
Cdd:TIGR02141 206 NKR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 118-256 6.79e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.29  E-value: 6.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 118 LITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIA 197
Cdd:cd06261   52 LGLLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPIL 131

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 750096528 198 TGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAALSMVLIAIMMGL 256
Cdd:cd06261  132 TGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 141-259 5.34e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.83  E-value: 5.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  141 AVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGG 220
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 750096528  221 Q--FQMIGNLVYAQFLTANDWPF--GAALSMVLIAIMMGLLTL 259
Cdd:pfam00528 134 PglGLLLIEAILGYDYPEIQGPVlaAALILLLLNLLVDILQRL 176
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-272 1.27e-84

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 254.69  E-value: 1.27e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   1 MSPALAWLTAFMVVPCLLVLALAFFRRGIYGGIEYTFTFETIALVF-DPLYASIFLKSAVIAGLAGLIASVIGYAAAYAI 79
Cdd:COG1176   15 LLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  80 ASMPARHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACY 159
Cdd:COG1176   95 ARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLY 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 160 APLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDW 239
Cdd:COG1176  175 AALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNW 254

                        250       260       270
                 ....*....|....*....|....*....|...
gi 750096528 240 PFGAALSMVLIAIMMGLLTLQTFVTERASGARA 272
Cdd:COG1176  255 PLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 5-257 2.00e-57

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 185.28  E-value: 2.00e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   5 LAWLTAFMVVPCLLVLALAFFRRGIYGGIEYTFTFETIALVFDPLYASIFLKSAVIAGLAGLIASVIGYAAAYAIASMPA 84
Cdd:PRK09497  16 VGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPH 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  85 RHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACYAPLSR 164
Cdd:PRK09497  96 KVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEK 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 165 LNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAA 244
Cdd:PRK09497 176 LDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPFGAA 255

                        250
                 ....*....|...
gi 750096528 245 LSMVLIAIMMGLL 257
Cdd:PRK09497 256 TSITLTIVMGLML 268
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 42-254 2.81e-36

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 131.37  E-value: 2.81e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  42 IALVFDPLYASIFLKSAVIAGLAGLIASVIGYAAAYAIASMPARHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITA 121
Cdd:PRK10683  87 LQLTDDPLYFDAYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNN 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 122 IARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFV 201
Cdd:PRK10683 167 FLLWLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSM 246

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 750096528 202 FVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAALSMVLIAIMM 254
Cdd:PRK10683 247 LVFIPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLI 299
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
4-271 1.91e-27

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 110.64  E-value: 1.91e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   4 ALAWLTAFMVVPCLLVLALAFFrrgiyggieyTFTFETIALVFDPLYASIFLKSAVIAGLAGLIASVIGYAAAYAIASMP 83
Cdd:COG1178   16 LALLLALLVLLPLLALLLRAFT----------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  84 ARHQPMLLFFAVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGydGELPRLLYTESAVVVGLVYNYLPFVILACYAPLS 163
Cdd:COG1178   86 FPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALF--GLEPPDIYGLGGIILVLVLFNYPYVYLLLRAALR 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 164 RLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGqFQMIGNLVYAQFLTANDWPFGA 243
Cdd:COG1178  164 SIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGG-YTTLTTAIYQAWLGDFDLGAAA 242

                        250       260
                 ....*....|....*....|....*...
gi 750096528 244 ALSMVLIAIMMGLLTLQTFVTERASGAR 271
Cdd:COG1178  243 ALALVLLLLVLLLLLLERRLRRRRRYAT 270
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 10-271 1.34e-21

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 90.94  E-value: 1.34e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  10 AFMVVPCLLVLALAFFRRGIYGGIEYTFTFETIALVF-DPLYASIFLKSAVIAGLAGLIASVIGYAAAYAIASMPARHQP 88
Cdd:COG1177   18 LFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFsDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  89 MLLFFAVLPFwsnylvrtyawIVllnrEGLITAIA-----RGLGYDGELPrllytesAVVVGLVYNYLPFVILACYAPLS 163
Cdd:COG1177   98 LLLALLLLPL-----------VV----PGIVLGVAllllfSALGLSGGLW-------GLILAHVVFTLPFVVLVVLARLQ 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 164 RLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDwPFGA 243
Cdd:COG1177  156 GFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGIS-PEIN 234

                        250       260
                 ....*....|....*....|....*...
gi 750096528 244 ALSMVLIAIMMGLLTLQTFVTERASGAR 271
Cdd:COG1177  235 ALSTLLILLSLLLLLLAERLRRRGERRR 262
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-266 5.03e-19

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 86.37  E-value: 5.03e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   2 SPALAWLTAFMVVPCLLVLAL---AFFRRGIYGGIEYTFTFET-IALVFDPLYASIFLKSAVIAGLAGLIASVIGYAAAY 77
Cdd:COG1178  284 GRWRWLALALCLLLVLLGLLLpllALLLWSLTKALDDNLTLDNyRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAY 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  78 AIASMPARHQPMLLFFAVLPfwsnYLVrtyawivllnrEGLITAIARGLGYDGELPRLLY-TESAVVVGLVYNYLPFVIL 156
Cdd:COG1178  364 LVRRRRGRLARLLDRLAMLP----YAV-----------PGIVLGLGLLLLFNRPLPLLLYgTLAILVLAYVVRFLPFALR 428

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 157 ACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYaQFLTA 236
Cdd:COG1178  429 SLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIY-QLASS 507

                        250       260       270
                 ....*....|....*....|....*....|
gi 750096528 237 NDWPFGAALSMVLIAIMMGLLTLQTFVTER 266
Cdd:COG1178  508 GRYGEAAALALLLVLVSLLPVLLLERLLGR 537
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-266 7.73e-17

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 78.25  E-value: 7.73e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   1 MSPALAWLTAFMVVPCLLVLALAFFRRGIYGGiEYTFT-FET-IALVFDPLYASIFLKSAVIAGLAgLIASVIGYAAAYA 78
Cdd:COG1175   24 LLPALLLLLVFVLYPLLYTLYLSFTDWNLLGP-PPEFVgLDNyARLFTDPRFWNALGNTLLFTVVS-VPLQLVLGLLLAL 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  79 IASMPARHQPMLLFFAVLPFWSNYLVRTYAWIVLLNRE-GLITAIARGLGYDGelPRLLYTES----AVVVGLVYNYLPF 153
Cdd:COG1175  102 LLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGALGLEP--INWLGDPSlalpAVIIVTVWKGTGF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 154 VILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGG----QFQMIGNLV 229
Cdd:COG1175  180 NMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGgpgnSTTTLVLYI 259

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 750096528 230 YAQFLTANDWPFGAALSMVLIAIMMGLLTLQTFVTER 266
Cdd:COG1175  260 YQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 134-259 2.29e-13

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 68.24  E-value: 2.29e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 134 RLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVT 213
Cdd:COG0555  131 KVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGA 210

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 750096528 214 PALLGG---GQFQMIGNLVYAQFLTAnDWPFGAALSMVLIAIMMGLLTL 259
Cdd:COG0555  211 VIFIAGnlpMKTEILPLLIYLKLEEG-DYAGATAIALVLLLISFLLLLL 258
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 107-266 1.37e-12

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 64.96  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  107 YAWIVLLNREGLITAIARGLGYdgelpRLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRR 186
Cdd:TIGR02141  53 FYLLIAFGPNGPIGKLLELFGI-----SLVFTFTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLK 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  187 ITLPMTAPGIATGFVFVFVLSIGNFVTPALLGG---GQFQMIGNLVYAQFltANDWPFGAALSMVLIAIMMGLLTLQTFV 263
Cdd:TIGR02141 128 VTLPLAFPGLLAGAVLSFARALGEFGATLMFAGnipGETQTIPLAIYDAV--ESDYELAHQLSLVLLAISLIVLLLVELL 205


                  ...
gi 750096528  264 TER 266
Cdd:TIGR02141 206 NKR 208
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 107-273 4.38e-10

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 58.14  E-value: 4.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 107 YAWIVLLNREGLITAIARGLGydgeLPRLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRR 186
Cdd:COG4149   62 FYLLLLFGRNGPLGQLLEELF----GISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFR 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 187 ITLPMTAPGIATGFVFVFVLSIGNFVTPALLGG---GQFQMIGNLVYAQFLTANDwpfGAALSMVLIAIMMGLLTLqtFV 263
Cdd:COG4149  138 VTLPLAKPGILAGAVLAFARALGEFGATLMFAGnipGKTQTLPLAIYDAVEAGDY---AAAHALSLILLAISFVVL--LL 212

                        170
                 ....*....|
gi 750096528 264 TERASGARAR 273
Cdd:COG4149  213 LNLLNRRRRR 222
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 118-256 6.79e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 57.29  E-value: 6.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 118 LITAIARGLGYDGELPRLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIA 197
Cdd:cd06261   52 LGLLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPIL 131

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 750096528 198 TGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAALSMVLIAIMMGL 256
Cdd:cd06261  132 TGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 151-266 9.82e-10

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 57.69  E-value: 9.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 151 LPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVY 230
Cdd:PRK09500 139 LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSSFVTGPSYEILPLKIY 218

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 750096528 231 AQFLTANDwPFGAALSMVLIAIMMGLLTLQTFVTER 266
Cdd:PRK09500 219 SMVKVGVS-PEVNALATILLVLSLVLVILSQLLARD 253
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 106-273 1.17e-09

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 57.71  E-value: 1.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 106 TYAWIVLLNREGLITAIARGLGYDGELP-RLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTF 184
Cdd:PRK15050 127 TLAFTFLYGSAGSVNIALQRLFGLEAPPlDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVA 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 185 RRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAALSMVLIAIMMGLLTLQTFVT 264
Cdd:PRK15050 207 RRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYRRVN 286


                 ....*....
gi 750096528 265 ERASGARAR 273
Cdd:PRK15050 287 RRAGGGSRD 295
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 94-250 6.04e-09

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 56.23  E-value: 6.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528   94 AVLPFWSNYLVRTYAWIVLLNREGLITAIARGLGydgelprlLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEAS 173
Cdd:TIGR03262  96 ALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFS--------IYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAA 167

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 750096528  174 RDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLgGGQFQMIGNLVYAQFLTANDWPFGAALSMVLI 250
Cdd:TIGR03262 168 RAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVI-GGDYNVLATDIYKQVIGQQNFPMGAVVGVLLL 243
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 134-211 1.74e-08

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 54.25  E-value: 1.74e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 750096528  134 RLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNF 211
Cdd:TIGR02139 127 KIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEY 204
cysT CHL00187
sulfate transport protein; Provisional
 135-219 5.96e-08

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 52.32  E-value: 5.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 135 LLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTP 214
Cdd:CHL00187 133 IVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSI 212


                 ....*
gi 750096528 215 ALLGG 219
Cdd:CHL00187 213 VIISS 217
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
137-269 7.85e-08

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 52.06  E-value: 7.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 137 YTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPAL 216
Cdd:PRK10971 138 YTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIF 217

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 217 LGGG---QFQMIGNLVYAQfLTANDWPFGAALSMVLIAIMMGLL----TLQTFVTERASG 269
Cdd:PRK10971 218 IAGNiawKTEVTSLMIFVR-LQEFDYPAASAIASVILAASLLLLfsinTLQSRFGRRVVG 276
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 134-211 5.28e-07

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 49.66  E-value: 5.28e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 750096528  134 RLLYTESAVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNF 211
Cdd:TIGR00969 137 QIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEF 214
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 141-259 5.34e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.83  E-value: 5.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528  141 AVVVGLVYNYLPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGG 220
Cdd:pfam00528  54 PAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 750096528  221 Q--FQMIGNLVYAQFLTANDWPF--GAALSMVLIAIMMGLLTL 259
Cdd:pfam00528 134 PglGLLLIEAILGYDYPEIQGPVlaAALILLLLNLLVDILQRL 176
modB PRK09421
molybdate ABC transporter permease subunit;
165-211 8.20e-05

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 42.99  E-value: 8.20e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 750096528 165 LNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNF 211
Cdd:PRK09421 118 VDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 151-222 2.26e-04

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 42.17  E-value: 2.26e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 750096528 151 LPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQF 222
Cdd:COG4135  438 LPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGAGRV 509
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 168-252 2.89e-04

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 41.62  E-value: 2.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 750096528 168 EIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQFLTANDWPFGAALSM 247
Cdd:COG0395  173 ELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTDWGLLMAA 252


                 ....*
gi 750096528 248 VLIAI 252
Cdd:COG0395  253 AVIAT 257
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 153-219 5.94e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 40.61  E-value: 5.94e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 750096528 153 FVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGG 219
Cdd:PRK10592 154 YVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSG 220
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 176-232 2.98e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 38.66  E-value: 2.98e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 750096528 176 LGGSAWTTFRRITLPMTAPGIATGFVFVFVLSIGNFVTPALLGGGQFQMIGNLVYAQ 232
Cdd:PRK09433 432 LGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQDFRTLPFLLYQQ 488
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 151-199 5.30e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 37.32  E-value: 5.30e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 750096528 151 LPFVILACYAPLSRLNPEIAEASRDLGGSAWTTFRRITLPMTAPGIATG 199
Cdd:COG0581  126 LPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTG 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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