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Conserved domains on  [gi|748707293|ref|WP_039965414|]
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MULTISPECIES: ABC transporter permease [Pseudomonadaceae]

Protein Classification

ABC transporter permease( domain architecture ID 11468417)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LolE COG4591
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ...
141-406 7.32e-24

ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443648 [Multi-domain]  Cd Length: 283  Bit Score: 100.00  E-value: 7.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 141 QVLLSASAASRLGVQVGDTLRLLVlrkldGSNERGELTVTVGGVLE--NSAFTRPAVLVHLDLLVAMENFRDGYAvpmfg 218
Cdd:COG4591   35 EVVLGEGLAKKLGLKVGDTITLIS-----PDGSPKTRRFTVVGIFEsgGYELDGSLVYVPLETAQELLGLGDQVS----- 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 219 fltgevapvreryaRARIYARGLDDVASIASWLDG--ERIESSTRAREIESVKAISHVLGLIFAVIAWTAVIGCVASLAG 296
Cdd:COG4591  105 --------------GILVKLKDGADAEAVAAALEAalPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVN 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 297 AFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGYAAYLVGSHVFNTALGANLAD-DGFVCKLENIHIL 375
Cdd:COG4591  171 TLLMSVLERTREIGILKALGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGILLPFiFALPVSLSPSDVL 250
                        250       260       270
                 ....*....|....*....|....*....|.
gi 748707293 376 LAFASALLIAIVVAAVGGFRAIHIQPAESLR 406
Cdd:COG4591  251 LALLLALLISLLASLYPARRAARLDPVEALR 281
 
Name Accession Description Interval E-value
LolE COG4591
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ...
141-406 7.32e-24

ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443648 [Multi-domain]  Cd Length: 283  Bit Score: 100.00  E-value: 7.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 141 QVLLSASAASRLGVQVGDTLRLLVlrkldGSNERGELTVTVGGVLE--NSAFTRPAVLVHLDLLVAMENFRDGYAvpmfg 218
Cdd:COG4591   35 EVVLGEGLAKKLGLKVGDTITLIS-----PDGSPKTRRFTVVGIFEsgGYELDGSLVYVPLETAQELLGLGDQVS----- 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 219 fltgevapvreryaRARIYARGLDDVASIASWLDG--ERIESSTRAREIESVKAISHVLGLIFAVIAWTAVIGCVASLAG 296
Cdd:COG4591  105 --------------GILVKLKDGADAEAVAAALEAalPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVN 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 297 AFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGYAAYLVGSHVFNTALGANLAD-DGFVCKLENIHIL 375
Cdd:COG4591  171 TLLMSVLERTREIGILKALGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGILLPFiFALPVSLSPSDVL 250
                        250       260       270
                 ....*....|....*....|....*....|.
gi 748707293 376 LAFASALLIAIVVAAVGGFRAIHIQPAESLR 406
Cdd:COG4591  251 LALLLALLISLLASLYPARRAARLDPVEALR 281
FtsX pfam02687
FtsX-like permease family; This is a family of predicted permeases and hypothetical ...
280-401 3.13e-06

FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.


Pssm-ID: 460652 [Multi-domain]  Cd Length: 120  Bit Score: 46.09  E-value: 3.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293  280 AVIAWTAVIGCVASLAGAFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGYAAYLVGSHVFNTALGAN 359
Cdd:pfam02687   1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSS 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 748707293  360 LadDGFVCKLENIHILLAFASALLIAIVVAAVGGFRAIHIQP 401
Cdd:pfam02687  81 G--ISLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
 
Name Accession Description Interval E-value
LolE COG4591
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ...
141-406 7.32e-24

ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443648 [Multi-domain]  Cd Length: 283  Bit Score: 100.00  E-value: 7.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 141 QVLLSASAASRLGVQVGDTLRLLVlrkldGSNERGELTVTVGGVLE--NSAFTRPAVLVHLDLLVAMENFRDGYAvpmfg 218
Cdd:COG4591   35 EVVLGEGLAKKLGLKVGDTITLIS-----PDGSPKTRRFTVVGIFEsgGYELDGSLVYVPLETAQELLGLGDQVS----- 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 219 fltgevapvreryaRARIYARGLDDVASIASWLDG--ERIESSTRAREIESVKAISHVLGLIFAVIAWTAVIGCVASLAG 296
Cdd:COG4591  105 --------------GILVKLKDGADAEAVAAALEAalPGLEVKTWRELNAALFSALKTEKLILLLILLLILLVAAFNIVN 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 297 AFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGYAAYLVGSHVFNTALGANLAD-DGFVCKLENIHIL 375
Cdd:COG4591  171 TLLMSVLERTREIGILKALGASRRQIRRIFLLEGLLLGLIGGLLGLLLGLLLALLLNALLGILLPFiFALPVSLSPSDVL 250
                        250       260       270
                 ....*....|....*....|....*....|.
gi 748707293 376 LAFASALLIAIVVAAVGGFRAIHIQPAESLR 406
Cdd:COG4591  251 LALLLALLISLLASLYPARRAARLDPVEALR 281
YbbP COG3127
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ...
123-407 1.03e-11

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442361 [Multi-domain]  Cd Length: 830  Bit Score: 66.75  E-value: 1.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 123 TASGDPLIAALPSPATLEQVLLSASAASRLGVQVGDTLRLlvlrkldgsnerGELTVTVGGVLEN------SAFTR-PAV 195
Cdd:COG3127  119 LAPAPPLADALAGGPAPGEVWVDPRLLARLGLKVGDTIRL------------GDATFTIAGVLTRepdrggGGFSLaPRV 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 196 LVHLDLLVAmenfrdgyavpmfgflTGEVAP-VRERYaraRIYARGLD-DVASIASWL-----DGERIESSTRAREI--E 266
Cdd:COG3127  187 LINLADLEA----------------TGLIQPgSRVRY---RYLVAGPDaDLEALRAWLepalpAGQRVRTVEDARPElgR 247
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 267 SVKAISHVLGLiFAVIAwtAVIGCVAsLAGAFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGYAAYL 346
Cdd:COG3127  248 ALDRAEQFLLL-VALLA--LLLAGVA-VANAARRYVARRLDTIALLRCLGASRRQIFRIYLLQLLLLGLLGSLLGLLLGA 323
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 748707293 347 VGSHVFNTALGANLADDGFVckleNIH---ILLAFASALLIAIVVAAVGGFRAIHIQPAESLRD 407
Cdd:COG3127  324 LLQALLAALLADLLPVPLEP----ALSplpLLLGLLVGLLVLLLFALPPLLRLRRVPPLRVLRR 383
SalY COG0577
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
14-406 6.35e-11

ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];


Pssm-ID: 440342 [Multi-domain]  Cd Length: 339  Bit Score: 62.99  E-value: 6.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293  14 IELAARDLWHDRKVSLCIVASLVAVIAPLLLLFGLKHGVVSQLNDELLSDPRNLeVRMLGNYDLAGGWF------ERLRA 87
Cdd:COG0577    3 LRLALRSLRRNKLRSLLTVLGIAIGIALVIAILALGRGLRRSLLRDLDSLGFDL-LTVSRTPGGSRATLsyedlrEALRA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293  88 QPGVGFVIPLTRS---LNTQADLQRDSQHFVANAEVIPTASGDPL----IAALPSPATLEQVLLSASAASRL---GVQVG 157
Cdd:COG0577   82 LPGVESVAPSSSGsatVRYGGGEPPSVRVLGVDPDYFRVLGIPLLagrfFTAADDLGAPPVVVIGEALARRLfggEDPVG 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 158 DTLRLlvlrkldgsnerGELTVTVGGVLENsaftrpavlvhldllvAMENFrdgyavpmfgfltgevapVRERYARARIY 237
Cdd:COG0577  162 KTIRL------------NGRPFTVVGVVEA----------------ELRAL------------------LRRRDPGDDFE 195
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 238 ARGLDDVasiaswldgeriesstrareIESVKAISHVLGLIFAVIAWTAVIGCVASLAGAFLANIDRKRKDLALLRLLGF 317
Cdd:COG0577  196 VQTLDEI--------------------LAALYGVLRTLTLLLGAIAGLALLVACIGIMNLMLASVTERTREIGIRKALGA 255
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 318 QRSAAGAYVMVQAALLTCLAFALGYAAYLVGSHVFNTALGANLADDGFVcklenihILLAFASALLIAIVVAAVGGFRAI 397
Cdd:COG0577  256 SRRDILRQFLTEALLLALLGGLLGLLLALLLLRLLAALLGLPVSLDPWV-------LLLALALSLLVGLLAGLYPARRAA 328

                 ....*....
gi 748707293 398 HIQPAESLR 406
Cdd:COG0577  329 RLDPVEALR 337
FtsX pfam02687
FtsX-like permease family; This is a family of predicted permeases and hypothetical ...
280-401 3.13e-06

FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.


Pssm-ID: 460652 [Multi-domain]  Cd Length: 120  Bit Score: 46.09  E-value: 3.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293  280 AVIAWTAVIGCVASLAGAFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGYAAYLVGSHVFNTALGAN 359
Cdd:pfam02687   1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSS 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 748707293  360 LadDGFVCKLENIHILLAFASALLIAIVVAAVGGFRAIHIQP 401
Cdd:pfam02687  81 G--ISLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
YbbP COG3127
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ...
265-408 7.35e-04

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442361 [Multi-domain]  Cd Length: 830  Bit Score: 41.71  E-value: 7.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 748707293 265 IESVKAISHVLGLIFAVIAWTAVIGCVASLAGAFLANIDRKRKDLALLRLLGFQRSAAGAYVMVQAALLTCLAFALGyaa 344
Cdd:COG3127  693 LDQVRDILDQVSLAVEFLAGFALLAGLLVLAAALAASRDERTREAALLRTLGASRRQLRRALALEFALLGLLAGLLA--- 769
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 748707293 345 yLVGSHVFNTALGANLADDGFVcklenIHILLAFASALLIAIVVAAVG---GFRAIHIQPAESLRDL 408
Cdd:COG3127  770 -ALLAELAGWALARFVFDLPFS-----PPWWLWLAGLLGGALLVLLAGllgARRVLRQPPLEVLREE 830
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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