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Conserved domains on  [gi|739087256|ref|WP_036958341|]
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MULTISPECIES: AraC family transcriptional regulator [Providencia]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 12168325)

AraC family transcriptional regulator containing a cupin domain as its effector domain and an AraC family helix-turn-helix (HTH) DNA binding domain, controls the expression of genes with diverse biological functions including metabolism, stress response, and virulence

CATH:  2.60.120.10
Gene Ontology:  GO:0003700|GO:0006355|GO:0043565
PubMed:  11282467|33837749|9409145|12270809|19478949|14697267|9573603
SCOP:  3001825

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AraC_binding_2 pfam14525
AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.
 36-211 2.81e-35

AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.


:

Pssm-ID: 434015  Cd Length: 173  Bit Score: 126.27  E-value: 2.81e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256   36 SMVGRVMKPHQFNLLNPHqRLDARMHYIPMGDISLSRLRYGADVSIIPGQLQDFFLVQMPLSGTAVIESGGKCIESTPQM 115
Cdd:pfam14525   3 EAVSRAFGPHRLRPLGPD-RFDARLRGVRLGGLSLGRLRYGAAVHIRPPELDDFYLLQLPLSGSAEIEQGGREVVLGPGD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256  116 ASLLSPEESTIMRWNSDNDQFMLRISRSLLerslvgqLGHTLDKPLVFELGFAWQSCIA--WRTLMNYLIECATR-APDL 192
Cdd:pfam14525  82 AVLLDPGRPYRLRWSEDCEQLVLRIPLRAL-------LGRPLRRPLRFAPRLDLDSGLGalWLRLLRLLAAELAAlGPAL 154

                         170
                  ....*....|....*....
gi 739087256  193 LQHKLITTQVEQLVSVTLL 211
Cdd:pfam14525 155 ASSPLVAAQLEELLASLLL 173
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
248-330 1.73e-25

helix_turn_helix, arabinose operon control protein;


:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 97.62  E-value: 1.73e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256   248 PITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEaTSVTGVALRWGFAHMGRFSADYKQRYGET 327
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTD-LSVTEIALRVGFSSQSYFSRAFKKLFGVT 79


                   ...
gi 739087256   328 PSQ 330
Cdd:smart00342  80 PSE 82
 
Name Accession Description Interval E-value
AraC_binding_2 pfam14525
AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.
 36-211 2.81e-35

AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.


Pssm-ID: 434015  Cd Length: 173  Bit Score: 126.27  E-value: 2.81e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256   36 SMVGRVMKPHQFNLLNPHqRLDARMHYIPMGDISLSRLRYGADVSIIPGQLQDFFLVQMPLSGTAVIESGGKCIESTPQM 115
Cdd:pfam14525   3 EAVSRAFGPHRLRPLGPD-RFDARLRGVRLGGLSLGRLRYGAAVHIRPPELDDFYLLQLPLSGSAEIEQGGREVVLGPGD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256  116 ASLLSPEESTIMRWNSDNDQFMLRISRSLLerslvgqLGHTLDKPLVFELGFAWQSCIA--WRTLMNYLIECATR-APDL 192
Cdd:pfam14525  82 AVLLDPGRPYRLRWSEDCEQLVLRIPLRAL-------LGRPLRRPLRFAPRLDLDSGLGalWLRLLRLLAAELAAlGPAL 154

                         170
                  ....*....|....*....
gi 739087256  193 LQHKLITTQVEQLVSVTLL 211
Cdd:pfam14525 155 ASSPLVAAQLEELLASLLL 173
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
248-330 1.73e-25

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 97.62  E-value: 1.73e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256   248 PITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEaTSVTGVALRWGFAHMGRFSADYKQRYGET 327
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTD-LSVTEIALRVGFSSQSYFSRAFKKLFGVT 79


                   ...
gi 739087256   328 PSQ 330
Cdd:smart00342  80 PSE 82
HTH_18 pfam12833
Helix-turn-helix domain;
254-330 4.95e-24

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 93.42  E-value: 4.95e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739087256  254 LAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEATSVTGVALRWGFAHMGRFSADYKQRYGETPSQ 330
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSE 77
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 225-330 1.36e-21

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 93.30  E-value: 1.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 225 RRSTIRPRHVRRVQEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEAtSVTGV 304
Cdd:COG4977  203 VPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDL-SIEEI 281

                         90       100
                 ....*....|....*....|....*.
gi 739087256 305 ALRWGFAHMGRFSADYKQRYGETPSQ 330
Cdd:COG4977  282 AAACGFGSASHFRRAFRRRFGVSPSA 307
PRK10130 PRK10130
HTH-type transcriptional regulator EutR;
192-333 1.75e-15

HTH-type transcriptional regulator EutR;


Pssm-ID: 182258 [Multi-domain]  Cd Length: 350  Bit Score: 76.11  E-value: 1.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 192 LLQHKLITTQVEQLVSVTLLSTQghNYIEDSGMRRSTIRPRhvrrvqEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKE 271
Cdd:PRK10130 208 VLGDNLLMAMGAMLEEAQPMVTA--ESISHQSYRRLLSRAR------EYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHA 279

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739087256 272 FLDISPMQYLRDLRMERVRAELLS--GEATSVTGVALRWGFAHMGRFSADYKQRYGETPSQSMK 333
Cdd:PRK10130 280 ILGIGPNAWLKRIRLNAVRRELISpwSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLH 343
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 87-335 8.86e-12

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 64.67  E-value: 8.86e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256  87 QDFFLVqMPLSGTAVIESGGKCIESTPQMASLLSPEESTIMRWNSDNDQFMLRISRSLLERSLVGQLGHTLDKplvfelg 166
Cdd:PRK09685  70 AHFFTV-FQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSEQISLLLPRELVEQYFPGQKPACAGR------- 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 167 fAWQSCIAWRTLMNYLIECAtRAPDLLQHKlitTQVEQLVSVTLLSTQGHNYIEDSGMRrstirPRHVRRVQEYLEAHAH 246
Cdd:PRK09685 142 -LSASLPMVQLSHRLLQQSM-NGPALSETE---SEALLEALIALLRPALHQRESVQPRR-----ERQFQKVVALIDQSIQ 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 247 EP-ITVEQLAHIAGVSLRSLYAGFKEfLDISPMQYLRDLRMERVRAEL---LSGEatSVTGVALRWGFAHMGRFSADYKQ 322
Cdd:PRK09685 212 EEiLRPEWIAGELGISVRSLYRLFAE-QGLVVAQYIRNRRLDRCADDLrpaADDE--KITSIAYKWGFSDSSHFSTAFKQ 288

                        250
                 ....*....|...
gi 739087256 323 RYGETPSQSMKKA 335
Cdd:PRK09685 289 RFGVSPGEYRRKF 301
 
Name Accession Description Interval E-value
AraC_binding_2 pfam14525
AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.
 36-211 2.81e-35

AraC-binding-like domain; This domain is related to the AraC ligand binding domain pfam02311.


Pssm-ID: 434015  Cd Length: 173  Bit Score: 126.27  E-value: 2.81e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256   36 SMVGRVMKPHQFNLLNPHqRLDARMHYIPMGDISLSRLRYGADVSIIPGQLQDFFLVQMPLSGTAVIESGGKCIESTPQM 115
Cdd:pfam14525   3 EAVSRAFGPHRLRPLGPD-RFDARLRGVRLGGLSLGRLRYGAAVHIRPPELDDFYLLQLPLSGSAEIEQGGREVVLGPGD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256  116 ASLLSPEESTIMRWNSDNDQFMLRISRSLLerslvgqLGHTLDKPLVFELGFAWQSCIA--WRTLMNYLIECATR-APDL 192
Cdd:pfam14525  82 AVLLDPGRPYRLRWSEDCEQLVLRIPLRAL-------LGRPLRRPLRFAPRLDLDSGLGalWLRLLRLLAAELAAlGPAL 154

                         170
                  ....*....|....*....
gi 739087256  193 LQHKLITTQVEQLVSVTLL 211
Cdd:pfam14525 155 ASSPLVAAQLEELLASLLL 173
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
248-330 1.73e-25

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 97.62  E-value: 1.73e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256   248 PITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEaTSVTGVALRWGFAHMGRFSADYKQRYGET 327
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTD-LSVTEIALRVGFSSQSYFSRAFKKLFGVT 79


                   ...
gi 739087256   328 PSQ 330
Cdd:smart00342  80 PSE 82
HTH_18 pfam12833
Helix-turn-helix domain;
254-330 4.95e-24

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 93.42  E-value: 4.95e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 739087256  254 LAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEATSVTGVALRWGFAHMGRFSADYKQRYGETPSQ 330
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSE 77
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 225-330 1.36e-21

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 93.30  E-value: 1.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 225 RRSTIRPRHVRRVQEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEAtSVTGV 304
Cdd:COG4977  203 VPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDL-SIEEI 281

                         90       100
                 ....*....|....*....|....*.
gi 739087256 305 ALRWGFAHMGRFSADYKQRYGETPSQ 330
Cdd:COG4977  282 AAACGFGSASHFRRAFRRRFGVSPSA 307
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
224-330 6.34e-19

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 84.83  E-value: 6.34e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 224 MRRSTIRPRHVRRVQEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEAtSVTG 303
Cdd:COG2207  144 LLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDL-SISE 222

                         90       100
                 ....*....|....*....|....*..
gi 739087256 304 VALRWGFAHMGRFSADYKQRYGETPSQ 330
Cdd:COG2207  223 IAYELGFSSQSHFSRAFKKRFGVTPSE 249
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 230-335 1.93e-16

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 78.94  E-value: 1.93e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 230 RPRHVRRVQEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEatSVTGVALRWG 309
Cdd:COG2169   82 RADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGL--SVTDAAYAAG 159

                         90       100
                 ....*....|....*....|....*.
gi 739087256 310 FAHMGRFSADYKQRYGETPSQSMKKA 335
Cdd:COG2169  160 FGSLSRFYEAFKKLLGMTPSAYRRGG 185
PRK10130 PRK10130
HTH-type transcriptional regulator EutR;
192-333 1.75e-15

HTH-type transcriptional regulator EutR;


Pssm-ID: 182258 [Multi-domain]  Cd Length: 350  Bit Score: 76.11  E-value: 1.75e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 192 LLQHKLITTQVEQLVSVTLLSTQghNYIEDSGMRRSTIRPRhvrrvqEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKE 271
Cdd:PRK10130 208 VLGDNLLMAMGAMLEEAQPMVTA--ESISHQSYRRLLSRAR------EYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHA 279

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 739087256 272 FLDISPMQYLRDLRMERVRAELLS--GEATSVTGVALRWGFAHMGRFSADYKQRYGETPSQSMK 333
Cdd:PRK10130 280 ILGIGPNAWLKRIRLNAVRRELISpwSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLH 343
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 87-335 8.86e-12

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 64.67  E-value: 8.86e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256  87 QDFFLVqMPLSGTAVIESGGKCIESTPQMASLLSPEESTIMRWNSDNDQFMLRISRSLLERSLVGQLGHTLDKplvfelg 166
Cdd:PRK09685  70 AHFFTV-FQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSEQISLLLPRELVEQYFPGQKPACAGR------- 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 167 fAWQSCIAWRTLMNYLIECAtRAPDLLQHKlitTQVEQLVSVTLLSTQGHNYIEDSGMRrstirPRHVRRVQEYLEAHAH 246
Cdd:PRK09685 142 -LSASLPMVQLSHRLLQQSM-NGPALSETE---SEALLEALIALLRPALHQRESVQPRR-----ERQFQKVVALIDQSIQ 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 247 EP-ITVEQLAHIAGVSLRSLYAGFKEfLDISPMQYLRDLRMERVRAEL---LSGEatSVTGVALRWGFAHMGRFSADYKQ 322
Cdd:PRK09685 212 EEiLRPEWIAGELGISVRSLYRLFAE-QGLVVAQYIRNRRLDRCADDLrpaADDE--KITSIAYKWGFSDSSHFSTAFKQ 288

                        250
                 ....*....|...
gi 739087256 323 RYGETPSQSMKKA 335
Cdd:PRK09685 289 RFGVSPGEYRRKF 301
ftrA PRK09393
transcriptional activator FtrA; Provisional
 236-330 2.76e-09

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 57.67  E-value: 2.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 236 RVQEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRaELLSGEATSVTGVALRWGFAHMGR 315
Cdd:PRK09393 222 PLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARAR-DLLESSALSIDQIAERAGFGSEES 300

                         90
                 ....*....|....*
gi 739087256 316 FSADYKQRYGETPSQ 330
Cdd:PRK09393 301 LRHHFRRRAATSPAA 315
PRK10371 PRK10371
transcriptional regulator MelR;
232-330 3.63e-08

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 54.06  E-value: 3.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 232 RHVRRVQEYLEAHAHEPITVEQLAhiAGVSLRSLYAG--FKEFLDISPMQYLRDLRMERVRAeLLSGEATSVTGVALRWG 309
Cdd:PRK10371 191 FYVSQMLGFIAENYDQALTINDVA--EHVKLNANYAMgiFQRVMQLTMKQYITAMRINHVRA-LLSDTDKSILDIALTAG 267

                         90       100
                 ....*....|....*....|.
gi 739087256 310 FAHMGRFSADYKQRYGETPSQ 330
Cdd:PRK10371 268 FRSSSRFYSTFGKYVGMSPQQ 288
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 241-282 3.60e-06

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 43.30  E-value: 3.60e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 739087256  241 LEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLR 282
Cdd:pfam00165   1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
234-328 1.10e-04

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 43.13  E-value: 1.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 739087256 234 VRRVQEYLEAHAHEPITVEQLAHIAGVSLRSLYAGFKEFLDISPMQYLRDLRMERVRAELLSGEAtSVTGVALRWGFAHM 313
Cdd:PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDA-SVTDIAYRCGFGDS 251

                         90
                 ....*....|....*
gi 739087256 314 GRFSADYKQRYGETP 328
Cdd:PRK13503 252 NHFSTLFRREFSWSP 266
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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