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Conserved domains on  [gi|738364083|ref|WP_036316342|]
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MULTISPECIES: NAD(P)/FAD-dependent oxidoreductase [Micrococcus]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11441299)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant; similar to sulfide:quinone oxidoreductase which catalyzes the oxidation of hydrogen sulfide using quinone as the electron acceptor

EC:  1.6.-.-
Gene Ontology:  GO:0003954|GO:0006116
PubMed:  15590775|28181562

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
10-421 8.09e-120

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 355.59  E-value: 8.09e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  10 KPRLLIVGGGYAGFHVARELQKKVaeRGGV-VTVVDPRPYMTYYPFLPEVVGGHIEGRHVNVDLQTHLKD--AEVVRGAV 86
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKL--GGDAeVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRagVRFIQGEV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  87 VSVDHAGRTavVRGEGGDEfeIPYQDIVMTAGAVTRVFPIPGLGEQGIGLRSVEEAVQLRNQILERLDAGslmtdaeERK 166
Cdd:COG1252   79 TGIDPEART--VTLADGRT--LSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA-------ERR 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 167 RALTFVVVGGGFAGIEAIAEMENLIRNAVeRNERLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSL 246
Cdd:COG1252  148 RLLTIVVVGGGPTGVELAGELAELLRKLL-RYPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRV 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 247 GDATDGVMKLvampskEEAETFAADTLVWCAGVVANSVVKSTDFPVDDRGRVEATPTLQIKDgeagaLEGAWACGDVSAV 326
Cdd:COG1252  227 TEVDADGVTL------EDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPG-----HPNVFAIGDCAAV 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 327 PDltgaGPGGFCVPNAQHAIRQAKRLAANYMAVRHGEgEVQEYVHKSLGTVAGLGFGRGVGNPLGTKIAGIPAFLAHRGY 406
Cdd:COG1252  296 PD----PDGKPVPKTAQAAVQQAKVLAKNIAALLRGK-PLKPFRYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAI 370
                        410
                 ....*....|....*
gi 738364083 407 HGYAMPTLERKFRIL 421
Cdd:COG1252  371 HLYFLPGFRGRLRVL 385
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
10-421 8.09e-120

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 355.59  E-value: 8.09e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  10 KPRLLIVGGGYAGFHVARELQKKVaeRGGV-VTVVDPRPYMTYYPFLPEVVGGHIEGRHVNVDLQTHLKD--AEVVRGAV 86
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKL--GGDAeVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRagVRFIQGEV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  87 VSVDHAGRTavVRGEGGDEfeIPYQDIVMTAGAVTRVFPIPGLGEQGIGLRSVEEAVQLRNQILERLDAGslmtdaeERK 166
Cdd:COG1252   79 TGIDPEART--VTLADGRT--LSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA-------ERR 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 167 RALTFVVVGGGFAGIEAIAEMENLIRNAVeRNERLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSL 246
Cdd:COG1252  148 RLLTIVVVGGGPTGVELAGELAELLRKLL-RYPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRV 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 247 GDATDGVMKLvampskEEAETFAADTLVWCAGVVANSVVKSTDFPVDDRGRVEATPTLQIKDgeagaLEGAWACGDVSAV 326
Cdd:COG1252  227 TEVDADGVTL------EDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPG-----HPNVFAIGDCAAV 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 327 PDltgaGPGGFCVPNAQHAIRQAKRLAANYMAVRHGEgEVQEYVHKSLGTVAGLGFGRGVGNPLGTKIAGIPAFLAHRGY 406
Cdd:COG1252  296 PD----PDGKPVPKTAQAAVQQAKVLAKNIAALLRGK-PLKPFRYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAI 370
                        410
                 ....*....|....*
gi 738364083 407 HGYAMPTLERKFRIL 421
Cdd:COG1252  371 HLYFLPGFRGRLRVL 385
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
10-437 6.01e-49

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 173.03  E-value: 6.01e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  10 KPRLLIVGGGYAGFHVARELQKKVAErggvVTVVDPRPYMTYYPFLPEVVGGHIEGRHVNVDLQT--HLKDAEVVRGAVV 87
Cdd:PTZ00318  10 KPNVVVLGTGWAGAYFVRNLDPKKYN----ITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPalAKLPNRYLRAVVY 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  88 SVDHAGRTAVVRGEGGDE------FEIPYQDIVMTAGAVTRVFPIPGLGEQGIGLRSVEEAVQLRNQILERLDAGSL-MT 160
Cdd:PTZ00318  86 DVDFEEKRVKCGVVSKSNnanvntFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLpTT 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 161 DAEERKRALTFVVVGGGFAGIEAIAEMENLIRNAVER-NERLSQsEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIE 239
Cdd:PTZ00318 166 SVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNlNPELVE-ECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 240 VLLNTSLGDATDgvmKLVAMPSKEEAETfaaDTLVWCAGVVANSVVKSTDFPVDDRGRVEATPTLQIKDgeagaLEGAWA 319
Cdd:PTZ00318 245 IRTKTAVKEVLD---KEVVLKDGEVIPT---GLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKP-----IPNVFA 313
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 320 CGDVSAVPDLTGAgpggfcvPNAQHAIRQAKRLAANYMAVRHGEGEVQEYVHKSLGTVAGLGFGRGVGNPLGTKIAGIPA 399
Cdd:PTZ00318 314 LGDCAANEERPLP-------TLAQVASQQGVYLAKEFNNELKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKA 386
                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 738364083 400 FLAHRGYHGYAMPTLERKFRILSGWVAETLFGRDSTSV 437
Cdd:PTZ00318 387 LLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
11-349 1.42e-27

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 111.64  E-value: 1.42e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083   11 PRLLIVGGGYAGFHVARELqkkvAERGGVVTVVDPRPYMTYY-PFLPEVV---GGHIEGRHVNVDLQTHLKDAEVVRGA- 85
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTL----AQLGGKVTLIEDEGTCPYGgCVLSKALlgaAEAPEIASLWADLYKRKEEVVKKLNNg 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083   86 --------VVSVDHAGRTAVVRG-EGGDEFEIPYQDIVMTAGAVTRVFPIPGLGE-QGIGLRSVEEAVQLRNQILERlda 155
Cdd:pfam07992  77 ievllgteVVSIDPGAKKVVLEElVDGDGETITYDRLVIATGARPRLPPIPGVELnVGFLVRTLDSAEALRLKLLPK--- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  156 gslmtdaeerkralTFVVVGGGFAGIEAIAEmenlirnavernerLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKD 235
Cdd:pfam07992 154 --------------RVVVVGGGYIGVELAAA--------------LAKLGKEVTLIEALDRLLRAFDEEISAALEKALEK 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  236 RGIEVLLNTSLGDAT--DGVMKLVAmpskEEAETFAADTLVWCAGVVANSV-VKSTDFPVDDRGRVEATPTLQIKDgeag 312
Cdd:pfam07992 206 NGVEVRLGTSVKEIIgdGDGVEVIL----KDGTEIDADLVVVAIGRRPNTElLEAAGLELDERGGIVVDEYLRTSV---- 277
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 738364083  313 alEGAWACGDVsavpdltgaGPGGFcvPNAQHAIRQA 349
Cdd:pfam07992 278 --PGIYAAGDC---------RVGGP--ELAQNAVAQG 301
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
10-421 8.09e-120

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 355.59  E-value: 8.09e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  10 KPRLLIVGGGYAGFHVARELQKKVaeRGGV-VTVVDPRPYMTYYPFLPEVVGGHIEGRHVNVDLQTHLKD--AEVVRGAV 86
Cdd:COG1252    1 MKRIVIVGGGFAGLEAARRLRKKL--GGDAeVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRagVRFIQGEV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  87 VSVDHAGRTavVRGEGGDEfeIPYQDIVMTAGAVTRVFPIPGLGEQGIGLRSVEEAVQLRNQILERLDAGslmtdaeERK 166
Cdd:COG1252   79 TGIDPEART--VTLADGRT--LSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERA-------ERR 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 167 RALTFVVVGGGFAGIEAIAEMENLIRNAVeRNERLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSL 246
Cdd:COG1252  148 RLLTIVVVGGGPTGVELAGELAELLRKLL-RYPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRV 226
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 247 GDATDGVMKLvampskEEAETFAADTLVWCAGVVANSVVKSTDFPVDDRGRVEATPTLQIKDgeagaLEGAWACGDVSAV 326
Cdd:COG1252  227 TEVDADGVTL------EDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPG-----HPNVFAIGDCAAV 295
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 327 PDltgaGPGGFCVPNAQHAIRQAKRLAANYMAVRHGEgEVQEYVHKSLGTVAGLGFGRGVGNPLGTKIAGIPAFLAHRGY 406
Cdd:COG1252  296 PD----PDGKPVPKTAQAAVQQAKVLAKNIAALLRGK-PLKPFRYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAI 370
                        410
                 ....*....|....*
gi 738364083 407 HGYAMPTLERKFRIL 421
Cdd:COG1252  371 HLYFLPGFRGRLRVL 385
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
10-437 6.01e-49

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 173.03  E-value: 6.01e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  10 KPRLLIVGGGYAGFHVARELQKKVAErggvVTVVDPRPYMTYYPFLPEVVGGHIEGRHVNVDLQT--HLKDAEVVRGAVV 87
Cdd:PTZ00318  10 KPNVVVLGTGWAGAYFVRNLDPKKYN----ITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPalAKLPNRYLRAVVY 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  88 SVDHAGRTAVVRGEGGDE------FEIPYQDIVMTAGAVTRVFPIPGLGEQGIGLRSVEEAVQLRNQILERLDAGSL-MT 160
Cdd:PTZ00318  86 DVDFEEKRVKCGVVSKSNnanvntFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLpTT 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 161 DAEERKRALTFVVVGGGFAGIEAIAEMENLIRNAVER-NERLSQsEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIE 239
Cdd:PTZ00318 166 SVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNlNPELVE-ECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVD 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 240 VLLNTSLGDATDgvmKLVAMPSKEEAETfaaDTLVWCAGVVANSVVKSTDFPVDDRGRVEATPTLQIKDgeagaLEGAWA 319
Cdd:PTZ00318 245 IRTKTAVKEVLD---KEVVLKDGEVIPT---GLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKP-----IPNVFA 313
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 320 CGDVSAVPDLTGAgpggfcvPNAQHAIRQAKRLAANYMAVRHGEGEVQEYVHKSLGTVAGLGFGRGVGNPLGTKIAGIPA 399
Cdd:PTZ00318 314 LGDCAANEERPLP-------TLAQVASQQGVYLAKEFNNELKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKA 386
                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 738364083 400 FLAHRGYHGYAMPTLERKFRILSGWVAETLFGRDSTSV 437
Cdd:PTZ00318 387 LLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
40-355 5.58e-30

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 118.76  E-value: 5.58e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  40 VTVVDPRPYmTYY--PFLPEVVGGHIEGRHvnvDLQTHL------KDAEVVRGA-VVSVDHAGRTAVVRGEGgdefEIPY 110
Cdd:COG0446    8 ITVIEKGPH-HSYqpCGLPYYVGGGIKDPE---DLLVRTpesferKGIDVRTGTeVTAIDPEAKTVTLRDGE----TLSY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 111 QDIVMTAGAVTRVFPIPGLGEQGI-GLRSVEEAVQLRNQIlerldagslmtdaeERKRALTFVVVGGGFAGIEAiAEmen 189
Cdd:COG0446   80 DKLVLATGARPRPPPIPGLDLPGVfTLRTLDDADALREAL--------------KEFKGKRAVVIGGGPIGLEL-AE--- 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 190 lirNAVERNerlsqseIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSLgDATDGVMKLVAmpSKEEAETFA 269
Cdd:COG0446  142 ---ALRKRG-------LKVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETV-VAIDGDDKVAV--TLTDGEEIP 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 270 ADTLVWCAGVVANS-VVKSTDFPVDDRGRVEATPTLQIKDgeagalEGAWACGDVSAVPDLTGAGPGGfcVPNAQHAIRQ 348
Cdd:COG0446  209 ADLVVVAPGVRPNTeLAKDAGLALGERGWIKVDETLQTSD------PDVYAAGDCAEVPHPVTGKTVY--IPLASAANKQ 280

                 ....*..
gi 738364083 349 AKRLAAN 355
Cdd:COG0446  281 GRVAAEN 287
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
10-355 7.23e-29

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 117.55  E-value: 7.23e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  10 KPRLLIVGGGYAGFHVARELQKKVAErgGVVTVVDPRPYMTYY-PFLPEVVGGHIEGRHVNVDLQTHLKD--AEVVRGA- 85
Cdd:COG1251    1 KMRIVIIGAGMAGVRAAEELRKLDPD--GEITVIGAEPHPPYNrPPLSKVLAGETDEEDLLLRPADFYEEngIDLRLGTr 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  86 VVSVDHAGRTavVRGEGGDEfeIPYQDIVMTAGAVTRVFPIPGLGEQGI-GLRSVEEAVQLRnqilerldagslmTDAEE 164
Cdd:COG1251   79 VTAIDRAART--VTLADGET--LPYDKLVLATGSRPRVPPIPGADLPGVfTLRTLDDADALR-------------AALAP 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 165 RKRAltfVVVGGGFAGIEAiAEMenlirnavernerLSQSEIRIVLVEAMGRIMPEV-SEEQAQGVVEHLKDRGIEVLLN 243
Cdd:COG1251  142 GKRV---VVIGGGLIGLEA-AAA-------------LRKRGLEVTVVERAPRLLPRQlDEEAGALLQRLLEALGVEVRLG 204
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 244 TS----LGDATDGVMKLvampskEEAETFAADTLVWCAGVVAN-SVVKSTDFP------VDDRGRVEAtptlqikdgeag 312
Cdd:COG1251  205 TGvteiEGDDRVTGVRL------ADGEELPADLVVVAIGVRPNtELARAAGLAvdrgivVDDYLRTSD------------ 266
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 738364083 313 alEGAWACGDVSAVPDLTGagpGGFCVPNAQHAIRQAKRLAAN 355
Cdd:COG1251  267 --PDIYAAGDCAEHPGPVY---GRRVLELVAPAYEQARVAAAN 304
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
11-349 1.42e-27

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 111.64  E-value: 1.42e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083   11 PRLLIVGGGYAGFHVARELqkkvAERGGVVTVVDPRPYMTYY-PFLPEVV---GGHIEGRHVNVDLQTHLKDAEVVRGA- 85
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTL----AQLGGKVTLIEDEGTCPYGgCVLSKALlgaAEAPEIASLWADLYKRKEEVVKKLNNg 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083   86 --------VVSVDHAGRTAVVRG-EGGDEFEIPYQDIVMTAGAVTRVFPIPGLGE-QGIGLRSVEEAVQLRNQILERlda 155
Cdd:pfam07992  77 ievllgteVVSIDPGAKKVVLEElVDGDGETITYDRLVIATGARPRLPPIPGVELnVGFLVRTLDSAEALRLKLLPK--- 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  156 gslmtdaeerkralTFVVVGGGFAGIEAIAEmenlirnavernerLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKD 235
Cdd:pfam07992 154 --------------RVVVVGGGYIGVELAAA--------------LAKLGKEVTLIEALDRLLRAFDEEISAALEKALEK 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  236 RGIEVLLNTSLGDAT--DGVMKLVAmpskEEAETFAADTLVWCAGVVANSV-VKSTDFPVDDRGRVEATPTLQIKDgeag 312
Cdd:pfam07992 206 NGVEVRLGTSVKEIIgdGDGVEVIL----KDGTEIDADLVVVAIGRRPNTElLEAAGLELDERGGIVVDEYLRTSV---- 277
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 738364083  313 alEGAWACGDVsavpdltgaGPGGFcvPNAQHAIRQA 349
Cdd:pfam07992 278 --PGIYAAGDC---------RVGGP--ELAQNAVAQG 301
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
12-326 1.24e-12

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 69.30  E-value: 1.24e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  12 RLLIVGGGYAGFHVA---RELQKKVaerggVVTVVDPRPYMTYYPF-LPEVVGGHI------------EGRHVNVDLQTH 75
Cdd:PRK09564   2 KIIIIGGTAAGMSAAakaKRLNKEL-----EITVYEKTDIVSFGACgLPYFVGGFFddpntmiartpeEFIKSGIDVKTE 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  76 LKdaevvrgaVVSVDHAGRTAVVRGEG-GDEFEIPYQDIVMTAGAVTRVFPIPGLGEQGI-GLRSVEEAVQLRNqilerl 153
Cdd:PRK09564  77 HE--------VVKVDAKNKTITVKNLKtGSIFNDTYDKLMIATGARPIIPPIKNINLENVyTLKSMEDGLALKE------ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 154 dagsLMTDaEERKRAltfVVVGGGFAGIEAIAEMENLIRNavernerlsqseIRIVLVEAmgRIMPEV-SEEQAQGVVEH 232
Cdd:PRK09564 143 ----LLKD-EEIKNI---VIIGAGFIGLEAVEAAKHLGKN------------VRIIQLED--RILPDSfDKEITDVMEEE 200
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 233 LKDRGIEVLLN---TSLgDATDGVMKLVAmpSKEEAEtfaADTLVWCAGVVANsvvksTDFPVDDrgRVEATPTLQIKDG 309
Cdd:PRK09564 201 LRENGVELHLNefvKSL-IGEDKVEGVVT--DKGEYE---ADVVIVATGVKPN-----TEFLEDT--GLKTLKNGAIIVD 267
                        330
                 ....*....|....*....
gi 738364083 310 EAGA--LEGAWACGDVSAV 326
Cdd:PRK09564 268 EYGEtsIENIYAAGDCATI 286
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
113-355 8.03e-10

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 60.87  E-value: 8.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 113 IVMTAGAVTRVFPIPGLGEQGIgLRSvEEAVQLRnQILERLdagslmtdaeerkraltfVVVGGGFAGIEaIAEMenlir 192
Cdd:COG1249  134 IVIATGSRPRVPPIPGLDEVRV-LTS-DEALELE-ELPKSL------------------VVIGGGYIGLE-FAQI----- 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 193 navernerLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSLGDAT---DGVmkLVAMPSKEEAETFA 269
Cdd:COG1249  187 --------FARLGSEVTLVERGDRLLPGEDPEISEALEKALEKEGIDILTGAKVTSVEktgDGV--TVTLEDGGGEEAVE 256
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 270 ADTLVWCAGVVANSV---VKSTDFPVDDRGRVEATPTLQIKDgeagalEGAWACGDVSAVPDLTgagpggfcvpnaqH-A 345
Cdd:COG1249  257 ADKVLVATGRRPNTDglgLEAAGVELDERGGIKVDEYLRTSV------PGIYAIGDVTGGPQLA-------------HvA 317
                        250
                 ....*....|
gi 738364083 346 IRQAKRLAAN 355
Cdd:COG1249  318 SAEGRVAAEN 327
PRK07251 PRK07251
FAD-containing oxidoreductase;
102-330 1.99e-08

FAD-containing oxidoreductase;


Pssm-ID: 180907 [Multi-domain]  Cd Length: 438  Bit Score: 56.30  E-value: 1.99e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 102 GGDEFEIPYQDIVMTAGAVTRVFPIPGLGE-QGI----GLRSVEEAVQlrnqilerldagslmtdaeerkralTFVVVGG 176
Cdd:PRK07251 111 GDEKIELTAETIVINTGAVSNVLPIPGLADsKHVydstGIQSLETLPE-------------------------RLGIIGG 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 177 GFAGIEAiaemenlirnAVERNERLSQseirIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSLGD-ATDGVMK 255
Cdd:PRK07251 166 GNIGLEF----------AGLYNKLGSK----VTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEvKNDGDQV 231
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 738364083 256 LVampsKEEAETFAADTLVWCAGVVANSV---VKSTDFPVDDRGRVEATPTLQIkdgeagALEGAWACGDVSAVPDLT 330
Cdd:PRK07251 232 LV----VTEDETYRFDALLYATGRKPNTEplgLENTDIELTERGAIKVDDYCQT------SVPGVFAVGDVNGGPQFT 299
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
80-341 2.97e-06

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 49.37  E-value: 2.97e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  80 EVVRGAVVSVDhaGRTAVVRGEGGDEfEIPYQDIVMTAGAVTRVfpIPGLGeqgIGLRSV---EEAVQLrnqilERLDag 156
Cdd:PRK06416 108 DIIRGEAKLVD--PNTVRVMTEDGEQ-TYTAKNIILATGSRPRE--LPGIE---IDGRVIwtsDEALNL-----DEVP-- 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 157 slmtdaeerKRAltfVVVGGGFAGIEAIAEMENLirnavernerlsQSEIRIVlvEAMGRIMPEVSEEQAQGVVEHLKDR 236
Cdd:PRK06416 173 ---------KSL---VVIGGGYIGVEFASAYASL------------GAEVTIV--EALPRILPGEDKEISKLAERALKKR 226
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 237 GIEVLLN---TSLGDATDGVmkLVAMPSKEEAETFAADTLVWCAGVVANSV--------VKsTD---FPVDDRGRveaTP 302
Cdd:PRK06416 227 GIKIKTGakaKKVEQTDDGV--TVTLEDGGKEETLEADYVLVAVGRRPNTEnlgleelgVK-TDrgfIEVDEQLR---TN 300
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 738364083 303 tlqikdgeagaLEGAWACGDVSAVPDL--TGAGPGGFCVPN 341
Cdd:PRK06416 301 -----------VPNIYAIGDIVGGPMLahKASAEGIIAAEA 330
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
172-246 8.58e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 43.73  E-value: 8.58e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738364083  172 VVVGGGFAGIEAIAEMENLirnavernerlsqsEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRGIEVLLNTSL 246
Cdd:pfam00070   3 VVVGGGYIGLELAGALARL--------------GSKVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLNTTV 63
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
12-120 5.23e-04

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 42.11  E-value: 5.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  12 RLLIVGGGYAGFHVARELQKkvaeRGGVVTVVD--PRPYMTYYPFLPEVVGGHIEGRHVNVDLQThlkdaevvrgAVVSV 89
Cdd:COG0446  126 RAVVIGGGPIGLELAEALRK----RGLKVTLVEraPRLLGVLDPEMAALLEEELREHGVELRLGE----------TVVAI 191
                         90       100       110
                 ....*....|....*....|....*....|.
gi 738364083  90 DHAGRTAVVRGEGGdefEIPYQDIVMTAGAV 120
Cdd:COG0446  192 DGDDKVAVTLTDGE---EIPADLVVVAPGVR 219
PRK04965 PRK04965
NADH:flavorubredoxin reductase NorW;
69-246 1.29e-03

NADH:flavorubredoxin reductase NorW;


Pssm-ID: 179902 [Multi-domain]  Cd Length: 377  Bit Score: 41.06  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  69 NVDLQTHLKdaevvrgaVVSVDHAGRTAVVRGEggdefEIPYQDIVMTAGAVTRVFPIPGlGEQGIGLRSVEEAVQLRNQ 148
Cdd:PRK04965  72 NLRLFPHTW--------VTDIDAEAQVVKSQGN-----QWQYDKLVLATGASAFVPPIPG-RELMLTLNSQQEYRAAETQ 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 149 IlerLDAgslmtdaeerKRALtfvVVGGGFAGIEaIAeMEnlirnavernerLSQSEIRIVLVEAMGRIMPE-VSEEQAQ 227
Cdd:PRK04965 138 L---RDA----------QRVL---VVGGGLIGTE-LA-MD------------LCRAGKAVTLVDNAASLLASlMPPEVSS 187
                        170
                 ....*....|....*....
gi 738364083 228 GVVEHLKDRGIEVLLNTSL 246
Cdd:PRK04965 188 RLQHRLTEMGVHLLLKSQL 206
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
13-323 1.34e-03

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 40.49  E-value: 1.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  13 LLIVGGG----YAGFHVARELQK-KVAER---GGVVTVVDprpyMTY-YPFLPEVVGGHIEGRHvnvdLQTHLK--DAEV 81
Cdd:COG0492    3 VVIIGAGpaglTAAIYAARAGLKtLVIEGgepGGQLATTK----EIEnYPGFPEGISGPELAER----LREQAErfGAEI 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083  82 VRGAVVSVDHAGRTAVVRGEGGDEFEIPYqdIVMTAGAVTRVFPIPGLGE-QGIGLRS--VEEAVQLRNQilerldagsl 158
Cdd:COG0492   75 LLEEVTSVDKDDGPFRVTTDDGTEYEAKA--VIIATGAGPRKLGLPGEEEfEGRGVSYcaTCDGFFFRGK---------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 159 mtdaeerkralTFVVVGGGFAGIEAIAEMENLIRN--AVERNERLSQSEIrivlveamgrimpevseeqaqgVVEHLKDR 236
Cdd:COG0492  143 -----------DVVVVGGGDSALEEALYLTKFASKvtLIHRRDELRASKI----------------------LVERLRAN 189
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 237 -GIEVLLNTSLGDA--TDGVMKLVAMPSKE-EAETFAADTLVWCAGVVANS-VVKSTDFPVDDRGRVEATPTLQIKdgea 311
Cdd:COG0492  190 pKIEVLWNTEVTEIegDGRVEGVTLKNVKTgEEKELEVDGVFVAIGLKPNTeLLKGLGLELDEDGYIVVDEDMETS---- 265
                        330
                 ....*....|..
gi 738364083 312 gaLEGAWACGDV 323
Cdd:COG0492  266 --VPGVFAAGDV 275
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
172-327 3.11e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 39.78  E-value: 3.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 172 VVVGGGFAGIEaIAEMenlirnavernerLSQSEIRIVLVEAMGRIMPEVSEEQAQGVVEHLKDRgIEVLLNTSLGDAT- 250
Cdd:PRK06292 173 AVIGGGVIGLE-LGQA-------------LSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEk 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738364083 251 DGVMKLVAMPSKEEAETFAADTLVWCAGVVANS---VVKSTDFPVDDRGRVEATPTLQIKDgeagalEGAWACGDVSAVP 327
Cdd:PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTdglGLENTGIELDERGRPVVDEHTQTSV------PGIYAAGDVNGKP 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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