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Conserved domains on  [gi|737274831|ref|WP_035258696|]
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MULTISPECIES: transcriptional repressor TraM [Rhizobium/Agrobacterium group]

Protein Classification

transcriptional repressor TraM( domain architecture ID 10557907)

transcriptional repressor TraM negatively regulates conjugation and the expression of tra genes by antagonizing TraR/AAI-dependent activation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Prok-TraM pfam09228
Prokaryotic Transcriptional repressor TraM; Members of this family of transcriptional ...
 1-99 1.61e-43

Prokaryotic Transcriptional repressor TraM; Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a 'globular head' and an 'elongated tail', and they negatively regulate conjugation and the expression of tra genes by antagonising traR/AAI-dependent activation.


:

Pssm-ID: 401243  Cd Length: 102  Bit Score: 136.74  E-value: 1.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737274831    1 MELEDAIVTNKVELRPLIGLTRGLPPADLETITVDAIRTHRRLVAKADELFQA---LPETYKTGKEAGGPQHVRYIEAII 77
Cdd:pfam09228   1 MDDEVSSETDTDELRPMEGLFSSLSKSELEALAISAIREHRRLLAAAEAVYQEwvrASADPSISPAVLGTLQLEYIEAQI 80

                          90       100
                  ....*....|....*....|..
gi 737274831   78 EMHAQMSAVKTLISILGFIPKV 99
Cdd:pfam09228  81 ESHAQQSELSTLIDALGYVPKV 102
 
Name Accession Description Interval E-value
Prok-TraM pfam09228
Prokaryotic Transcriptional repressor TraM; Members of this family of transcriptional ...
 1-99 1.61e-43

Prokaryotic Transcriptional repressor TraM; Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a 'globular head' and an 'elongated tail', and they negatively regulate conjugation and the expression of tra genes by antagonising traR/AAI-dependent activation.


Pssm-ID: 401243  Cd Length: 102  Bit Score: 136.74  E-value: 1.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737274831    1 MELEDAIVTNKVELRPLIGLTRGLPPADLETITVDAIRTHRRLVAKADELFQA---LPETYKTGKEAGGPQHVRYIEAII 77
Cdd:pfam09228   1 MDDEVSSETDTDELRPMEGLFSSLSKSELEALAISAIREHRRLLAAAEAVYQEwvrASADPSISPAVLGTLQLEYIEAQI 80

                          90       100
                  ....*....|....*....|..
gi 737274831   78 EMHAQMSAVKTLISILGFIPKV 99
Cdd:pfam09228  81 ESHAQQSELSTLIDALGYVPKV 102
 
Name Accession Description Interval E-value
Prok-TraM pfam09228
Prokaryotic Transcriptional repressor TraM; Members of this family of transcriptional ...
 1-99 1.61e-43

Prokaryotic Transcriptional repressor TraM; Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a 'globular head' and an 'elongated tail', and they negatively regulate conjugation and the expression of tra genes by antagonising traR/AAI-dependent activation.


Pssm-ID: 401243  Cd Length: 102  Bit Score: 136.74  E-value: 1.61e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737274831    1 MELEDAIVTNKVELRPLIGLTRGLPPADLETITVDAIRTHRRLVAKADELFQA---LPETYKTGKEAGGPQHVRYIEAII 77
Cdd:pfam09228   1 MDDEVSSETDTDELRPMEGLFSSLSKSELEALAISAIREHRRLLAAAEAVYQEwvrASADPSISPAVLGTLQLEYIEAQI 80

                          90       100
                  ....*....|....*....|..
gi 737274831   78 EMHAQMSAVKTLISILGFIPKV 99
Cdd:pfam09228  81 ESHAQQSELSTLIDALGYVPKV 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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