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Conserved domains on  [gi|737137325|ref|WP_035124616|]
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P27 family phage terminase small subunit [Clostridium tetani]

Protein Classification

COG3747 family protein( domain architecture ID 10007944)

COG3747 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3747 COG3747
Phage terminase, small subunit [Mobilome: prophages, transposons];
1-140 8.19e-32

Phage terminase, small subunit [Mobilome: prophages, transposons];


:

Pssm-ID: 442961  Cd Length: 148  Bit Score: 110.84  E-value: 8.19e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   1 MARPSKS--VKTMSKNLTKEEKESRLEteerlKGGVDKISPPSHLNVRQKKIFKYIVHELEVSGILGNLDIYILGTCSIS 78
Cdd:COG3747    1 RGRKPKPtaLKLLKGNPGKREINKREP-----KPPTDVPEPPKWLSEEAKKEWKRIAPELIAMGILTNLDLAALAAYCQA 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737137325  79 IDRLQEIEKLINKD---IE----RLLDKDLMSAKDKYTKDFFRCCNELSLSPQSRAKLGNINLQAKEQR 140
Cdd:COG3747   76 YARYREAEEEIAEEgltYEtesgYLKKNPAVAIKNDATKQMRRLAAELGLTPASRARLAIPKPQEEEED 144
 
Name Accession Description Interval E-value
COG3747 COG3747
Phage terminase, small subunit [Mobilome: prophages, transposons];
1-140 8.19e-32

Phage terminase, small subunit [Mobilome: prophages, transposons];


Pssm-ID: 442961  Cd Length: 148  Bit Score: 110.84  E-value: 8.19e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   1 MARPSKS--VKTMSKNLTKEEKESRLEteerlKGGVDKISPPSHLNVRQKKIFKYIVHELEVSGILGNLDIYILGTCSIS 78
Cdd:COG3747    1 RGRKPKPtaLKLLKGNPGKREINKREP-----KPPTDVPEPPKWLSEEAKKEWKRIAPELIAMGILTNLDLAALAAYCQA 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737137325  79 IDRLQEIEKLINKD---IE----RLLDKDLMSAKDKYTKDFFRCCNELSLSPQSRAKLGNINLQAKEQR 140
Cdd:COG3747   76 YARYREAEEEIAEEgltYEtesgYLKKNPAVAIKNDATKQMRRLAAELGLTPASRARLAIPKPQEEEED 144
sm_term_P27 TIGR01558
phage terminase, small subunit, putative, P27 family; This model describes a distinct family ...
39-142 2.69e-10

phage terminase, small subunit, putative, P27 family; This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273691  Cd Length: 116  Bit Score: 54.35  E-value: 2.69e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   39 PPSHLNVRQKKIFKYIVHELEVSGILGNLDIYILGTCSISIDRLQEIEKLINKD-IERLLDKDLMSA------KDKYTKD 111
Cdd:TIGR01558   2 APDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEATgITATVEDGSPKAnpaltvVEDAFKQ 81
                          90       100       110
                  ....*....|....*....|....*....|.
gi 737137325  112 FFRCCNELSLSPQSRAKLGnINLQAKEQRED 142
Cdd:TIGR01558  82 LRSIGSALGLTPSSRSRLV-INVAKEDKKAD 111
Terminase_4 pfam05119
Phage terminase, small subunit;
48-130 2.16e-08

Phage terminase, small subunit;


Pssm-ID: 461553 [Multi-domain]  Cd Length: 96  Bit Score: 48.78  E-value: 2.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   48 KKIFKYIVHELEVSGILGNLDIYILGTCSISIDRLQEIEKLINKD--------IERLLDKDLMSAKDKYTKDFFRCCNEL 119
Cdd:pfam05119   2 KKEWKRIAPELEELGLLTELDVAALAAYCEAYARYREAERDIAEEgltiettnGNNLKKNPAVAIANDALKQMRKLAAEL 81
                          90
                  ....*....|.
gi 737137325  120 SLSPQSRAKLG 130
Cdd:pfam05119  82 GLTPSSRSRLA 92
 
Name Accession Description Interval E-value
COG3747 COG3747
Phage terminase, small subunit [Mobilome: prophages, transposons];
1-140 8.19e-32

Phage terminase, small subunit [Mobilome: prophages, transposons];


Pssm-ID: 442961  Cd Length: 148  Bit Score: 110.84  E-value: 8.19e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   1 MARPSKS--VKTMSKNLTKEEKESRLEteerlKGGVDKISPPSHLNVRQKKIFKYIVHELEVSGILGNLDIYILGTCSIS 78
Cdd:COG3747    1 RGRKPKPtaLKLLKGNPGKREINKREP-----KPPTDVPEPPKWLSEEAKKEWKRIAPELIAMGILTNLDLAALAAYCQA 75
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737137325  79 IDRLQEIEKLINKD---IE----RLLDKDLMSAKDKYTKDFFRCCNELSLSPQSRAKLGNINLQAKEQR 140
Cdd:COG3747   76 YARYREAEEEIAEEgltYEtesgYLKKNPAVAIKNDATKQMRRLAAELGLTPASRARLAIPKPQEEEED 144
sm_term_P27 TIGR01558
phage terminase, small subunit, putative, P27 family; This model describes a distinct family ...
39-142 2.69e-10

phage terminase, small subunit, putative, P27 family; This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273691  Cd Length: 116  Bit Score: 54.35  E-value: 2.69e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   39 PPSHLNVRQKKIFKYIVHELEVSGILGNLDIYILGTCSISIDRLQEIEKLINKD-IERLLDKDLMSA------KDKYTKD 111
Cdd:TIGR01558   2 APDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEATgITATVEDGSPKAnpaltvVEDAFKQ 81
                          90       100       110
                  ....*....|....*....|....*....|.
gi 737137325  112 FFRCCNELSLSPQSRAKLGnINLQAKEQRED 142
Cdd:TIGR01558  82 LRSIGSALGLTPSSRSRLV-INVAKEDKKAD 111
Terminase_4 pfam05119
Phage terminase, small subunit;
48-130 2.16e-08

Phage terminase, small subunit;


Pssm-ID: 461553 [Multi-domain]  Cd Length: 96  Bit Score: 48.78  E-value: 2.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737137325   48 KKIFKYIVHELEVSGILGNLDIYILGTCSISIDRLQEIEKLINKD--------IERLLDKDLMSAKDKYTKDFFRCCNEL 119
Cdd:pfam05119   2 KKEWKRIAPELEELGLLTELDVAALAAYCEAYARYREAERDIAEEgltiettnGNNLKKNPAVAIANDALKQMRKLAAEL 81
                          90
                  ....*....|.
gi 737137325  120 SLSPQSRAKLG 130
Cdd:pfam05119  82 GLTPSSRSRLA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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