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Conserved domains on  [gi|736877144|ref|WP_034876778|]
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DUF6442 family protein [Bifidobacterium moukalabense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6442 pfam20040
Family of unknown function (DUF6442); This family of proteins is functionally uncharacterized. ...
 1-104 5.52e-30

Family of unknown function (DUF6442); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length.


:

Pssm-ID: 437872  Cd Length: 102  Bit Score: 102.66  E-value: 5.52e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736877144    1 MDKKEILELSRKENplHDEGVENAQDNGRKWGVLGFLSLYAIVVLYDLAVGIASVLPTVFLLGYLSCEALGRYAARKEKA 80
Cdd:pfam20040   1 MDKEEILEKSRQEK--KDEGKEYAENRGRKIGFIAFCVLFIFLMIFNLFNGQDNYDILALFWAFLSAEAYGKYRFTKDKS 78

                          90       100
                  ....*....|....*....|....
gi 736877144   81 ALVTGIICAIGTVATLASYVMNTL 104
Cdd:pfam20040  79 YLILTIAGGLASILFLASYVIGTL 102
 
Name Accession Description Interval E-value
DUF6442 pfam20040
Family of unknown function (DUF6442); This family of proteins is functionally uncharacterized. ...
 1-104 5.52e-30

Family of unknown function (DUF6442); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length.


Pssm-ID: 437872  Cd Length: 102  Bit Score: 102.66  E-value: 5.52e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736877144    1 MDKKEILELSRKENplHDEGVENAQDNGRKWGVLGFLSLYAIVVLYDLAVGIASVLPTVFLLGYLSCEALGRYAARKEKA 80
Cdd:pfam20040   1 MDKEEILEKSRQEK--KDEGKEYAENRGRKIGFIAFCVLFIFLMIFNLFNGQDNYDILALFWAFLSAEAYGKYRFTKDKS 78

                          90       100
                  ....*....|....*....|....
gi 736877144   81 ALVTGIICAIGTVATLASYVMNTL 104
Cdd:pfam20040  79 YLILTIAGGLASILFLASYVIGTL 102
 
Name Accession Description Interval E-value
DUF6442 pfam20040
Family of unknown function (DUF6442); This family of proteins is functionally uncharacterized. ...
 1-104 5.52e-30

Family of unknown function (DUF6442); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length.


Pssm-ID: 437872  Cd Length: 102  Bit Score: 102.66  E-value: 5.52e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736877144    1 MDKKEILELSRKENplHDEGVENAQDNGRKWGVLGFLSLYAIVVLYDLAVGIASVLPTVFLLGYLSCEALGRYAARKEKA 80
Cdd:pfam20040   1 MDKEEILEKSRQEK--KDEGKEYAENRGRKIGFIAFCVLFIFLMIFNLFNGQDNYDILALFWAFLSAEAYGKYRFTKDKS 78

                          90       100
                  ....*....|....*....|....
gi 736877144   81 ALVTGIICAIGTVATLASYVMNTL 104
Cdd:pfam20040  79 YLILTIAGGLASILFLASYVIGTL 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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