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Conserved domains on  [gi|734881688|ref|WP_034128041|]
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MULTISPECIES: cytochrome c family protein [Pseudomonas]

Protein Classification

c-type cytochrome( domain architecture ID 10007442)

c-type cytochrome is an electron carrier protein that contains one or more heme groups

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
24-121 3.24e-49

Cytochrome c2 [Energy production and conversion];


:

Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 152.34  E-value: 3.24e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLAAYIEDPKSVVSGTRMIFW 103
Cdd:COG3474    4 AAGEKLFNRKCAACHSVDGGAGNRVGPNLNGVVGRKAGSVEGFAYSDALKASGLVWDEETLDAWLADPKAFVPGTKMPFA 83
                         90
                 ....*....|....*...
gi 734881688 104 GISDQEKIENILAYLETF 121
Cdd:COG3474   84 GLKDPEDRADLIAYLKTL 101
 
Name Accession Description Interval E-value
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
24-121 3.24e-49

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 152.34  E-value: 3.24e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLAAYIEDPKSVVSGTRMIFW 103
Cdd:COG3474    4 AAGEKLFNRKCAACHSVDGGAGNRVGPNLNGVVGRKAGSVEGFAYSDALKASGLVWDEETLDAWLADPKAFVPGTKMPFA 83
                         90
                 ....*....|....*...
gi 734881688 104 GISDQEKIENILAYLETF 121
Cdd:COG3474   84 GLKDPEDRADLIAYLKTL 101
PTZ00405 PTZ00405
cytochrome c; Provisional
24-122 1.12e-28

cytochrome c; Provisional


Pssm-ID: 173596  Cd Length: 114  Bit Score: 100.50  E-value: 1.12e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLAAYIEDPKSVVSGTRMIFW 103
Cdd:PTZ00405  15 ERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFMPGTKMSFA 94
                         90
                 ....*....|....*....
gi 734881688 104 GISDQEKIENILAYLETFQ 122
Cdd:PTZ00405  95 GIKKPQERADVIAYLETLK 113
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
24-122 1.20e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 53.70  E-value: 1.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688   24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLaayiedpksvVSGTRMI-F 102
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGG----------PPGTGMPaF 70
                          90       100
                  ....*....|....*....|
gi 734881688  103 WGISDQEkIENILAYLETFQ 122
Cdd:pfam00034  71 DGLTDEE-IADLVAYLLSLS 89
 
Name Accession Description Interval E-value
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
24-121 3.24e-49

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 152.34  E-value: 3.24e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLAAYIEDPKSVVSGTRMIFW 103
Cdd:COG3474    4 AAGEKLFNRKCAACHSVDGGAGNRVGPNLNGVVGRKAGSVEGFAYSDALKASGLVWDEETLDAWLADPKAFVPGTKMPFA 83
                         90
                 ....*....|....*...
gi 734881688 104 GISDQEKIENILAYLETF 121
Cdd:COG3474   84 GLKDPEDRADLIAYLKTL 101
PTZ00405 PTZ00405
cytochrome c; Provisional
24-122 1.12e-28

cytochrome c; Provisional


Pssm-ID: 173596  Cd Length: 114  Bit Score: 100.50  E-value: 1.12e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLAAYIEDPKSVVSGTRMIFW 103
Cdd:PTZ00405  15 ERGEKLFKGRAAQCHTATKGGSNGVGPNLFGIVNRKSGTVEGFAYSKANADSGVIWTPEVLDVYLENPKKFMPGTKMSFA 94
                         90
                 ....*....|....*....
gi 734881688 104 GISDQEKIENILAYLETFQ 122
Cdd:PTZ00405  95 GIKKPQERADVIAYLETLK 113
PTZ00048 PTZ00048
cytochrome c; Provisional
24-124 1.49e-28

cytochrome c; Provisional


Pssm-ID: 185414  Cd Length: 115  Bit Score: 100.32  E-value: 1.49e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTqDYQYSDAMKNSGVVWTREKLAAYIEDPKSVVSGTRMIFW 103
Cdd:PTZ00048  16 KKGAKLFKAKCAQCHTINKGGAVKQGPNLHGFYGRKSGSA-DFPYSDANKNSGIVWSDKHLFEYLVNPKLYIPGTKMVFA 94
                         90       100
                 ....*....|....*....|.
gi 734881688 104 GISDQEKIENILAYLETFQPK 124
Cdd:PTZ00048  95 GIKKEKERADLIAYLKEASSK 115
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
24-122 1.20e-10

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 53.70  E-value: 1.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688   24 EAGGKLFTKTCGGCHSIGEGARGGFGPELNGIIGRPAGTTQDYQYSDAMKNSGVVWTREKLaayiedpksvVSGTRMI-F 102
Cdd:pfam00034   1 ARGKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAGG----------PPGTGMPaF 70
                          90       100
                  ....*....|....*....|
gi 734881688  103 WGISDQEkIENILAYLETFQ 122
Cdd:pfam00034  71 DGLTDEE-IADLVAYLLSLS 89
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
27-124 9.55e-06

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 41.25  E-value: 9.55e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688  27 GKLFTKTCGGCHSI-GEGARGGFGPELNGiigrpagttQDYQYsdamknsgvvwtrekLAAYIEDPKsvvSGTRM----- 100
Cdd:COG2863   18 GKAYAAACAACHGAdGEGNPGGGAPRLAG---------QHAEY---------------LVAQLKAFR---SGARKngvmp 70
                         90       100
                 ....*....|....*....|....*
gi 734881688 101 -IFWGISDQEkIENILAYLETFQPK 124
Cdd:COG2863   71 aIAKGLSDED-IKALAAYIASLKAP 94
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
3-124 3.45e-04

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 38.39  E-value: 3.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688   3 YVLLTLALTVIAAPAFAAGDAEAGGKLFTKTCGGCHsiGEGARGGFG--PELNGIIGRPAgttqdyqysdamknsgvvwT 80
Cdd:COG2010   69 LLALLLAAAAADAPAADAEALARGKALYEQNCAACH--GADGKGGLGaaPNLTDDALYGG-------------------D 127
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 734881688  81 REKLAAYIEDPksvVSGTRMIFWG--ISDQEkIENILAYLETFQPK 124
Cdd:COG2010  128 PEALVETILNG---RPGGAMPAFGgqLSDEE-IAALAAYLRSLSGN 169
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
26-55 5.03e-03

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 35.18  E-value: 5.03e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 734881688  26 GGKLFTKTCGGCHsiGEGARGGFGPELNGI 55
Cdd:PRK14486 218 GKALYDANCAACH--GDEAQGQEGVALNDI 245
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
24-118 7.73e-03

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 32.76  E-value: 7.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 734881688   24 EAGGKLFTKTCGGCHsigegARGGFGPELNgiigrpagttqdyqysdamknsGVVWTREKLAAYIEDPKsvvsgTRMIFW 103
Cdd:pfam13442   4 AAGEALYAANCASCH-----GTGGAGPSLA----------------------GRALPPEALVDIIRNGK-----GAMPAF 51
                          90
                  ....*....|....*..
gi 734881688  104 G--ISDQEkIENILAYL 118
Cdd:pfam13442  52 GgdLSDEE-LEALAAYL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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