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Conserved domains on  [gi|727186718|ref|WP_033648567|]
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MULTISPECIES: CoA transferase subunit A [Serratia]

Protein Classification

CoA transferase subunit A( domain architecture ID 10004510)

CoA transferase subunit A is part of a complex that catalyzes the reversible transfer of CoA from one carboxylic acid to another

CATH:  3.40.1080.10
Gene Ontology:  GO:0008410
SCOP:  4001854

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
AtoD COG1788
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism];
5-225 8.08e-120

Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism];


:

Pssm-ID: 441394  Cd Length: 226  Bit Score: 340.14  E-value: 8.08e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   5 DKRVGSYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGfgLGRLLETHQIRKVVGSY---V 81
Cdd:COG1788    2 DKVVISLAEAVADVKDGMTIAIGGFGLCGIPMALIDELIRQGVKDLTLISNNAGVDG--LGLLIGAGQVKKVIASYvggV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  82 GENALFEQQALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWK 161
Cdd:COG1788   80 GLNPEFRRAVEAGELEVELVPQGTLAERLRAGGAGLPFFPTRTGLGTDVAEGKETREIDGEEYVLEPALRADVALIHAQK 159
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727186718 162 ADYFGNVIYRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLIQ---GTFEKRI 225
Cdd:COG1788  160 ADRAGNLVYRGTARNFNPLMAMAAKRVIVEVEEIVEVGELDPDAVVTPGIFVDAVVEvpgGARDKRI 226
 
Name Accession Description Interval E-value
AtoD COG1788
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism];
5-225 8.08e-120

Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism];


Pssm-ID: 441394  Cd Length: 226  Bit Score: 340.14  E-value: 8.08e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   5 DKRVGSYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGfgLGRLLETHQIRKVVGSY---V 81
Cdd:COG1788    2 DKVVISLAEAVADVKDGMTIAIGGFGLCGIPMALIDELIRQGVKDLTLISNNAGVDG--LGLLIGAGQVKKVIASYvggV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  82 GENALFEQQALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWK 161
Cdd:COG1788   80 GLNPEFRRAVEAGELEVELVPQGTLAERLRAGGAGLPFFPTRTGLGTDVAEGKETREIDGEEYVLEPALRADVALIHAQK 159
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727186718 162 ADYFGNVIYRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLIQ---GTFEKRI 225
Cdd:COG1788  160 ADRAGNLVYRGTARNFNPLMAMAAKRVIVEVEEIVEVGELDPDAVVTPGIFVDAVVEvpgGARDKRI 226
pcaI_scoA_fam TIGR02429
3-oxoacid CoA-transferase, A subunit; Various members of this family are characterized as the ...
4-217 3.80e-81

3-oxoacid CoA-transferase, A subunit; Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.


Pssm-ID: 131482  Cd Length: 222  Bit Score: 241.98  E-value: 3.80e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718    4 LDKRVGSYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGFGLGRLLETHQIRKVVGSY--V 81
Cdd:TIGR02429   2 INKTIESAAEAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLAALLKAGQVRKLICSFprQ 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   82 GENALFEQQALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWK 161
Cdd:TIGR02429  82 SDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFTPTGYGTLLAEGKETREFDGKGYVLEYPLPADFALIKAHK 161
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 727186718  162 ADYFGNVIYRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLI 217
Cdd:TIGR02429 162 ADRWGNLTYRKAARNFGPIMAMAAKTTIAQVSQVVELGELDPEDVITPGIFVQRVV 217
CoA_trans pfam01144
Coenzyme A transferase;
12-219 2.83e-78

Coenzyme A transferase;


Pssm-ID: 395909 [Multi-domain]  Cd Length: 216  Bit Score: 234.50  E-value: 2.83e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   12 QEALAG-LTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVdgFGLGRLLETHQIRKVVGSYVGE--NALFE 88
Cdd:pfam01144   5 AEAVAKeIKDGMTVNVGGFGLIGIPETLIAALARSGVKDLTVISNEAGV--LGLGPLLLNGSVKKVIASYGGEtaNPEFG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   89 QQALSGELEVDLTPQGTLAEKIRAGGAGIP--AFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWKADYFG 166
Cdd:pfam01144  83 RQYFSGELEFELWPQGGLADRLRAGGAGIPfeGFLTNTGIGTYVAPKKRVPGFGGAMYLLEPALRADVALIKASKADGEG 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 727186718  167 NVIYRHTAQNFN-PLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLIQG 219
Cdd:pfam01144 163 NLVFRTTAPNFNgPAVAAAAKVTILEVEEIVEKGELLPLTVHTPGVLVDAVVEA 216
CoA_trans smart00882
Coenzyme A transferase; Coenzyme A (CoA) transferases belong to an evolutionary conserved ...
12-217 1.47e-72

Coenzyme A transferase; Coenzyme A (CoA) transferases belong to an evolutionary conserved family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.


Pssm-ID: 214882 [Multi-domain]  Cd Length: 212  Bit Score: 219.77  E-value: 1.47e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718    12 QEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGvdgFGLGRLLETHQIRKVVGSYVGENALFEQQA 91
Cdd:smart00882   3 AEAAREIKDGDTVALGGFGGLPTPAALILALIRQGPKDLTLISENGG---LGLGLLAGEGDVKKIIAGHVGLTPLLGRLY 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718    92 LSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAE---GKEVREFN-GRPYIMETAITGDFAIVKGWKADYFGN 167
Cdd:smart00882  80 FDGEIESFLLPQGGLADRLRAGAAGVPGFGTLAGLGTDVDPryeGGKVRPFGmGGAYLLVPAIRPDVALIRAHTADEFGN 159
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 727186718   168 VIYRHTAQNFN-PLMATAGRITVVEVEEIVAPGELDPAAIH--TPGIYVDRLI 217
Cdd:smart00882 160 LVYEKEATSCGlPLTAAAAKKVIVQVEEIVDLGVLDPDPVRllIPGVLVDAVV 212
PRK09920 PRK09920
acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
10-217 4.73e-66

acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional


Pssm-ID: 182146 [Multi-domain]  Cd Length: 219  Bit Score: 203.45  E-value: 4.73e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  10 SYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGFGLGRLLETHQIRKVVGSYVGENALFEQ 89
Cdd:PRK09920   7 TLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVKKVIASHIGTNPETGR 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  90 QALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWKADYFGNVI 169
Cdd:PRK09920  87 RMISGEMDVELVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRADTLGNLT 166
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 727186718 170 YRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLI 217
Cdd:PRK09920 167 YQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHII 214
 
Name Accession Description Interval E-value
AtoD COG1788
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism];
5-225 8.08e-120

Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism];


Pssm-ID: 441394  Cd Length: 226  Bit Score: 340.14  E-value: 8.08e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   5 DKRVGSYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGfgLGRLLETHQIRKVVGSY---V 81
Cdd:COG1788    2 DKVVISLAEAVADVKDGMTIAIGGFGLCGIPMALIDELIRQGVKDLTLISNNAGVDG--LGLLIGAGQVKKVIASYvggV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  82 GENALFEQQALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWK 161
Cdd:COG1788   80 GLNPEFRRAVEAGELEVELVPQGTLAERLRAGGAGLPFFPTRTGLGTDVAEGKETREIDGEEYVLEPALRADVALIHAQK 159
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727186718 162 ADYFGNVIYRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLIQ---GTFEKRI 225
Cdd:COG1788  160 ADRAGNLVYRGTARNFNPLMAMAAKRVIVEVEEIVEVGELDPDAVVTPGIFVDAVVEvpgGARDKRI 226
pcaI_scoA_fam TIGR02429
3-oxoacid CoA-transferase, A subunit; Various members of this family are characterized as the ...
4-217 3.80e-81

3-oxoacid CoA-transferase, A subunit; Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.


Pssm-ID: 131482  Cd Length: 222  Bit Score: 241.98  E-value: 3.80e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718    4 LDKRVGSYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGFGLGRLLETHQIRKVVGSY--V 81
Cdd:TIGR02429   2 INKTIESAAEAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLAALLKAGQVRKLICSFprQ 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   82 GENALFEQQALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWK 161
Cdd:TIGR02429  82 SDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFTPTGYGTLLAEGKETREFDGKGYVLEYPLPADFALIKAHK 161
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 727186718  162 ADYFGNVIYRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLI 217
Cdd:TIGR02429 162 ADRWGNLTYRKAARNFGPIMAMAAKTTIAQVSQVVELGELDPEDVITPGIFVQRVV 217
CoA_trans pfam01144
Coenzyme A transferase;
12-219 2.83e-78

Coenzyme A transferase;


Pssm-ID: 395909 [Multi-domain]  Cd Length: 216  Bit Score: 234.50  E-value: 2.83e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   12 QEALAG-LTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVdgFGLGRLLETHQIRKVVGSYVGE--NALFE 88
Cdd:pfam01144   5 AEAVAKeIKDGMTVNVGGFGLIGIPETLIAALARSGVKDLTVISNEAGV--LGLGPLLLNGSVKKVIASYGGEtaNPEFG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718   89 QQALSGELEVDLTPQGTLAEKIRAGGAGIP--AFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWKADYFG 166
Cdd:pfam01144  83 RQYFSGELEFELWPQGGLADRLRAGGAGIPfeGFLTNTGIGTYVAPKKRVPGFGGAMYLLEPALRADVALIKASKADGEG 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 727186718  167 NVIYRHTAQNFN-PLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLIQG 219
Cdd:pfam01144 163 NLVFRTTAPNFNgPAVAAAAKVTILEVEEIVEKGELLPLTVHTPGVLVDAVVEA 216
CoA_trans smart00882
Coenzyme A transferase; Coenzyme A (CoA) transferases belong to an evolutionary conserved ...
12-217 1.47e-72

Coenzyme A transferase; Coenzyme A (CoA) transferases belong to an evolutionary conserved family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.


Pssm-ID: 214882 [Multi-domain]  Cd Length: 212  Bit Score: 219.77  E-value: 1.47e-72
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718    12 QEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGvdgFGLGRLLETHQIRKVVGSYVGENALFEQQA 91
Cdd:smart00882   3 AEAAREIKDGDTVALGGFGGLPTPAALILALIRQGPKDLTLISENGG---LGLGLLAGEGDVKKIIAGHVGLTPLLGRLY 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718    92 LSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAE---GKEVREFN-GRPYIMETAITGDFAIVKGWKADYFGN 167
Cdd:smart00882  80 FDGEIESFLLPQGGLADRLRAGAAGVPGFGTLAGLGTDVDPryeGGKVRPFGmGGAYLLVPAIRPDVALIRAHTADEFGN 159
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 727186718   168 VIYRHTAQNFN-PLMATAGRITVVEVEEIVAPGELDPAAIH--TPGIYVDRLI 217
Cdd:smart00882 160 LVYEKEATSCGlPLTAAAAKKVIVQVEEIVDLGVLDPDPVRllIPGVLVDAVV 212
PRK09920 PRK09920
acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
10-217 4.73e-66

acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional


Pssm-ID: 182146 [Multi-domain]  Cd Length: 219  Bit Score: 203.45  E-value: 4.73e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  10 SYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRRGVRGLTVVSNNCGVDGFGLGRLLETHQIRKVVGSYVGENALFEQ 89
Cdd:PRK09920   7 TLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVKKVIASHIGTNPETGR 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  90 QALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGTPIAEGKEVREFNGRPYIMETAITGDFAIVKGWKADYFGNVI 169
Cdd:PRK09920  87 RMISGEMDVELVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRADTLGNLT 166
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 727186718 170 YRHTAQNFNPLMATAGRITVVEVEEIVAPGELDPAAIHTPGIYVDRLI 217
Cdd:PRK09920 167 YQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHII 214
YdiF COG4670
Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism];
10-214 4.70e-24

Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism];


Pssm-ID: 443707 [Multi-domain]  Cd Length: 511  Bit Score: 99.42  E-value: 4.70e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  10 SYQEALAGLTDNMTVLAGGFGLCGIPENLIEEIRRR-----GVRGLTVVSNnCGV---DGFGLGRLLETHQIRKVVGSYV 81
Cdd:COG4670    5 SAEEAAALIKDGDTVATSGFVGAGVPEELLKALEERfletgHPRDLTLIHA-AGQgdgKGRGLDHLAHEGLVKRVIGGHW 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727186718  82 GENALFEQQALSGELEVDLTPQGTLAEKIRAGGAGIPAFFTATGYGT---PIAEGK-----------EVREFNGRPYIME 147
Cdd:COG4670   84 GLSPKLQKLAVENKIEAYNLPQGVISHLFREIAAGRPGVLTKVGLGTfvdPRLEGGklnerttedlvELVEIDGEEYLFY 163
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727186718 148 TAITGDFAIVKGWKADYFGNVIYRHTAQNFNPL-MATAGR----ITVVEVEEIVAPGELDPAAIHTPGIYVD 214
Cdd:COG4670  164 KAFPIDVALIRGTTADEDGNLSMEHEALTLEVLaIAQAAKnsggIVIAQVERIVKRGSLHPKDVKVPGILVD 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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