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Conserved domains on  [gi|727185491|ref|WP_033647475|]
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MULTISPECIES: fimbrial protein [Serratia]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-180 2.81e-41

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 136.71  E-value: 2.81e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491   1 MKKVLLPLAALVlSATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDA 80
Cdd:COG3539    1 MKKLLLALLLAL-ALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  81 GDY---SLRFDGNTVAGNPDLLSVSNVGGtgaaATGVGIEITDNNGKPFAIGDGSninddvAKVTIAADGKATFNLQARY 157
Cdd:COG3539   80 GTSnsvKVTFTGTADSANPGLLANTGSGG----ASGVGIQLLDSDGTPIPLGTPS------SAVTLTSNGSATLPFYARY 149

                        170       180
                 ....*....|....*....|...
gi 727185491 158 RSFDSNVTAGLANATSPFTIEYK 180
Cdd:COG3539  150 VATGATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-180 2.81e-41

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 136.71  E-value: 2.81e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491   1 MKKVLLPLAALVlSATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDA 80
Cdd:COG3539    1 MKKLLLALLLAL-ALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  81 GDY---SLRFDGNTVAGNPDLLSVSNVGGtgaaATGVGIEITDNNGKPFAIGDGSninddvAKVTIAADGKATFNLQARY 157
Cdd:COG3539   80 GTSnsvKVTFTGTADSANPGLLANTGSGG----ASGVGIQLLDSDGTPIPLGTPS------SAVTLTSNGSATLPFYARY 149

                        170       180
                 ....*....|....*....|...
gi 727185491 158 RSFDSNVTAGLANATSPFTIEYK 180
Cdd:COG3539  150 VATGATVTAGSFNATATFTIDYQ 172
lpfA PRK15289
fimbrial protein; Provisional
 17-180 1.36e-27

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 102.34  E-value: 1.36e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  17 ASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDA--GDYSLRFDGNTVAG 94
Cdd:PRK15289  18 AGHALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPAtyTQAAVRFDGTEAPG 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  95 NPDLLSVSN---------VGGTGA--AATGVGIEItdnngkpFAIGDGSNIN--DDVAKVTIAADGKATFNLQARYRSFD 161
Cdd:PRK15289  98 GDGDLKVGTpltagnpgdFTGTGQaiAATGVGIRI-------FNQSDNSQVKlyNDSAYTAIDAEGKAEMKFIARYVATN 170

                        170
                 ....*....|....*....
gi 727185491 162 SNVTAGLANATSPFTIEYK 180
Cdd:PRK15289 171 ATVTAGTANADSQFTVEYK 189
Fimbrial pfam00419
Fimbrial protein;
27-180 3.05e-15

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 69.00  E-value: 3.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491   27 VKFTGEI--KQSTCQVTsDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEkCDAGD----YSLRFDGNTVAGNPDLLS 100
Cdd:pfam00419   1 INFTGTVtrVPATCKIT-AGTPIEVDFGQIPVNELNAGGEGSRQKPFSITLE-CSSGSsavkVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  101 VSNVGGtgaAATGVGIEITDNNGKPFAIGDGSNINDDVAKVTIAadgkATFNLQARYRSFDSN-VTAGLANATSPFTIEY 179
Cdd:pfam00419  79 TGNGAG---AATGVGIRLYDANGGALPPNNGTSSIPVSATAAVA----TGITFTASLVATTGGtPTAGDFNATATIVVDY 151


                  .
gi 727185491  180 K 180
Cdd:pfam00419 152 Q 152
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-180 2.81e-41

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 136.71  E-value: 2.81e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491   1 MKKVLLPLAALVlSATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDA 80
Cdd:COG3539    1 MKKLLLALLLAL-ALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCDA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  81 GDY---SLRFDGNTVAGNPDLLSVSNVGGtgaaATGVGIEITDNNGKPFAIGDGSninddvAKVTIAADGKATFNLQARY 157
Cdd:COG3539   80 GTSnsvKVTFTGTADSANPGLLANTGSGG----ASGVGIQLLDSDGTPIPLGTPS------SAVTLTSNGSATLPFYARY 149

                        170       180
                 ....*....|....*....|...
gi 727185491 158 RSFDSNVTAGLANATSPFTIEYK 180
Cdd:COG3539  150 VATGATVTAGSFNATATFTIDYQ 172
lpfA PRK15289
fimbrial protein; Provisional
 17-180 1.36e-27

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 102.34  E-value: 1.36e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  17 ASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDA--GDYSLRFDGNTVAG 94
Cdd:PRK15289  18 AGHALAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPAtyTQAAVRFDGTEAPG 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  95 NPDLLSVSN---------VGGTGA--AATGVGIEItdnngkpFAIGDGSNIN--DDVAKVTIAADGKATFNLQARYRSFD 161
Cdd:PRK15289  98 GDGDLKVGTpltagnpgdFTGTGQaiAATGVGIRI-------FNQSDNSQVKlyNDSAYTAIDAEGKAEMKFIARYVATN 170

                        170
                 ....*....|....*....
gi 727185491 162 SNVTAGLANATSPFTIEYK 180
Cdd:PRK15289 171 ATVTAGTANADSQFTVEYK 189
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 14-180 1.48e-24

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 93.88  E-value: 1.48e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  14 SATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDAGDYS---LRFDGN 90
Cdd:PRK15209  15 STSVFAAESGDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITTNKkvnVSFNGV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  91 TVAGNPDLLSVSNVGGtgaAATGVGIEITDNNGKPFAIGDGSNinddvakVTIAADGKATFNLQARYRSFDSNVTAGLAN 170
Cdd:PRK15209  95 GDADDSTLVSVSTEAG---AATGVGIGIYDNANTLVELNTGKS-------TTTLAAGQTVLYFTANYVSTKDTVTTGYGN 164

                        170
                 ....*....|
gi 727185491 171 ATSPFTIEYK 180
Cdd:PRK15209 165 AEVDFNLSYE 174
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
25-180 2.27e-19

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 80.77  E-value: 2.27e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  25 GTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCD---AGDYSLRFDGNTVAGNPDLLSV 101
Cdd:PRK15194  33 GTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTIQLNDCDpvvAATAAVAFSGQADATNDNLLAV 112

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727185491 102 SNvGGTGAAATGVGIEITDNNGKPFAiGDGSNINDDVAKVtiaaDGKATFNLQARYRSFDSNVTAGLANATSPFTIEYK 180
Cdd:PRK15194 113 AS-STNTTTATGVGIEILDNTSSILK-PDGATFSANQNLI----EGTNTLHFSARYKATGTSASAGQANADATFIMKYE 185
PRK09934 PRK09934
fimbriae assembly protein;
31-179 3.62e-18

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 77.24  E-value: 3.62e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  31 GEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDAGDYSLRFDGnTVAGNPDLLSVSNvggtGAA 110
Cdd:PRK09934  33 GNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGCPPGSASITFTG-TPASDTNLLALDD----PAM 107

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727185491 111 ATGVGIEITDNNGKPFAIGDGSNinddvaKVTIAADGKATFNLQARYRSFDSNVTAGLANATSPFTIEY 179
Cdd:PRK09934 108 AQTVAIEIRDSDRSRLALGQASP------TVEVDANGNATLNFYANYIALADGVQPGVAKADATFMINY 170
Fimbrial pfam00419
Fimbrial protein;
27-180 3.05e-15

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 69.00  E-value: 3.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491   27 VKFTGEI--KQSTCQVTsDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEkCDAGD----YSLRFDGNTVAGNPDLLS 100
Cdd:pfam00419   1 INFTGTVtrVPATCKIT-AGTPIEVDFGQIPVNELNAGGEGSRQKPFSITLE-CSSGSsavkVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  101 VSNVGGtgaAATGVGIEITDNNGKPFAIGDGSNINDDVAKVTIAadgkATFNLQARYRSFDSN-VTAGLANATSPFTIEY 179
Cdd:pfam00419  79 TGNGAG---AATGVGIRLYDANGGALPPNNGTSSIPVSATAAVA----TGITFTASLVATTGGtPTAGDFNATATIVVDY 151


                  .
gi 727185491  180 K 180
Cdd:pfam00419 152 Q 152
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 27-180 1.21e-12

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 62.79  E-value: 1.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  27 VKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDAG--DYSLRFDGNTVAGNPDLLSVSNV 104
Cdd:PRK15190  30 LEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGiaGAKIWFTGEPDPDNPALLAITDT 109

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 727185491 105 G-GTGAA-ATGVGIEITDNNgkpfaiGDGSNINDDVAKVTIAADGKATFNLQARYRSFDSNVTAGLANATSPFTIEYK 180
Cdd:PRK15190 110 GmGSGNMlASGVGVEILNDD------QDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQYE 181
PRK15205 PRK15205
long polar fimbrial protein LpfE; Provisional
 14-180 6.03e-12

long polar fimbrial protein LpfE; Provisional


Pssm-ID: 237923  Cd Length: 176  Bit Score: 61.02  E-value: 6.03e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  14 SATASNAMAANGTVKFTGEIKQSTCQVTSDtqNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCD-AGDYSLRFDGNTV 92
Cdd:PRK15205  19 GMAAPTDLGPAGDIHFTITIKAKACELEKD--SLEVDMGTMVLQKPVKVGTELNQKNFSIGLKDCDgISKASVTMDGSPD 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  93 AGNPDLLSVsNVGGtgaaATGVGIEITDNNG-KPFAIGDGSNinddVAKVTIAADGKATFNLQARYRSFDSNVTAGLANA 171
Cdd:PRK15205  97 PDDPSLFAL-DAGG----ATGVALKIKTSKGtQQYPKSTDGT----PVEWAINGDGTTQLNYIASYVPVNADATVGTANA 167


                 ....*....
gi 727185491 172 TSPFTIEYK 180
Cdd:PRK15205 168 TVNFSVTYE 176
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 14-179 6.19e-12

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 60.88  E-value: 6.19e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  14 SATASNAMAANGTVKFTGEIKQSTCQVTSDTqnKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDAGDYS---LRFDGN 90
Cdd:PRK15300  18 SPAALADTAKDGTVHITGLIKQNACTVKTDS--VEVTLQEEFASLFTAAGQTAGDTDFTIELENCDANVYSsvqARFEGT 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  91 TVAGNPDLLSvsnvggTGAAATGVGIEITDNNGKPFAIGDGSNINDDVAKVTIAADGKATFNLQARYRSFDSNVTAGLAN 170
Cdd:PRK15300  96 LDGTDATILK------NEDDAENIGVQILDKTSTPMTFNDLQAWSAAVALPTAEGVTELSMPFTARYIATAVPVKSGTVD 169


                 ....*....
gi 727185491 171 ATSPFTIEY 179
Cdd:PRK15300 170 ATATFYLQY 178
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 17-180 5.33e-11

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 58.19  E-value: 5.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  17 ASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKC--DAGDYSLRFDGNTVAG 94
Cdd:PRK15191  15 ASGVQAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCgsTASGVTVSFSGAADSR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  95 NPDLLSVSnvgGTGAAATGVGIEITDNNGKPFAIGDGSNinddvakVTIAADGKATFNLQ--ARYRSFDSNVTAGLANAT 172
Cdd:PRK15191  95 NTDLLALT---AGESDASGIGIALYDQNKTLIPLGQESD-------VVTLSPGQASAHLQfyARYLADGGAVTPGDANAS 164


                 ....*...
gi 727185491 173 SPFTIEYK 180
Cdd:PRK15191 165 ATFILAYE 172
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
15-179 5.03e-10

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 55.63  E-value: 5.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  15 ATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKS-ASKAFQISLEKCDAGDYS---LRFDGN 90
Cdd:PRK15200  17 VIAQPVMVESGRVHLRGQLVNGGCAVATESQDLRVLMGQYRTNAFTGPGSFApVSVPFSLRLISCSAEVWRhvgIAFAGV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  91 TVAGNPDLLSVSnvgGTGAAATGVGIEITDNNGKpfaigdgsNINDDVAKVTIAA--DGKATFNLQARYRSFDSNVTAGL 168
Cdd:PRK15200  97 TPAEDPHVFLAS---GEGIGNAGIGLALFDDQQR--------QIIPNTLPLHYAPilTSEMTLHFTARYRAISENMTPGR 165

                        170
                 ....*....|.
gi 727185491 169 ANATSPFTIEY 179
Cdd:PRK15200 166 IHSEVWFTLVY 176
PRK09733 PRK09733
fimbrial-like protein;
24-180 1.59e-06

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 46.10  E-value: 1.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  24 NGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTvGSKSASKAFQISLEKCDAGDYSLRFD--------GNTVAGN 95
Cdd:PRK09733  25 HGIVKFKGEVISAPCSIKPGDEDLTVNLGEVADTVLKS-DQKSLAEPFTIHLQDCMLSQGGTTYSkakvtfttANTMTGQ 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  96 PDLLSVSNVGGTGaAATGVGIEITDNNGKPFAIGDGSNINDDvakvtiAADGKATFNLQARYRSFDSNVTAGLANATSPF 175
Cdd:PRK09733 104 SDLLKNTKETEIG-GATGVGVRILDSQSGEVTLGTPVVITFN------NTNSYQELNFKARMESPSKDATPGNVYAQADY 176


                 ....*
gi 727185491 176 TIEYK 180
Cdd:PRK09733 177 KIAYE 181
PRK15283 PRK15283
fimbrial major subunit StfA;
14-179 4.45e-06

fimbrial major subunit StfA;


Pssm-ID: 185183  Cd Length: 186  Bit Score: 44.76  E-value: 4.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  14 SATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFptVGSKSASKA-FQISLEKC---DAGDYSLRFD- 88
Cdd:PRK15283  18 SSFANAAGSNTGTVTFTGTIEDSPCSIVVGDEHQTVNLGHIGTGSL--MGGKESSKVdFHIGLENCaftTEKEASTVFSa 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  89 -GNTVAGNPDLLSVSNVGGTGAAatGVGIEITDNNGKPFAIGDGSNINDDVAKVTIAADGKATFNLQARYRSFDSNVTAG 167
Cdd:PRK15283  96 iGNESSANPGSVALMRIGGGEMA--GSSIVIGNHLGSAIKLGDAYSENLTMNGSVAAAKQTLNFKAWVKGDSAASTIDTG 173

                        170
                 ....*....|..
gi 727185491 168 LANATSPFTIEY 179
Cdd:PRK15283 174 EFSSTVNFTISY 185
PRK15296 PRK15296
fimbrial protein SthA;
14-180 1.99e-05

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 43.16  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  14 SATASNAMAANGTVKFTGEIKQSTCQVT-SDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCDAGDY------SLR 86
Cdd:PRK15296  13 TAVASTPVFAQNTITFNGKIYDQACTVQvNGSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAGTgvptqaMFR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  87 FDGNTVAGNPDLLSVSNVGGTgAAATGVGIEITDnngkpfAIGDGSNINDDVAKVTIAADG-KATFNLQARYRSFDS-NV 164
Cdd:PRK15296  93 FHGATDDSNPTYFKNADEGSE-TGAAGVGISIQN------ASHSDVTDNTDDAAVNLPTDGsTADFTYYAAMANDGSaTV 165

                        170
                 ....*....|....*.
gi 727185491 165 TAGLANATSPFTIEYK 180
Cdd:PRK15296 166 TGGDVSTQVTYTVSYQ 181
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 14-179 2.01e-05

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 42.88  E-value: 2.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  14 SATASNAMAANGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKA-FQISLEKCD---AGDYSLRFDG 89
Cdd:PRK15187  21 TAQADTTTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGMVANQKEdFTIKLEDCDtqtSQNAAVIFNG 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  90 NTVAGNPDllSVSNVGGTGaAATGVGIEITDNNGKPFAIGDGSN---INDDVAKVTIAADGKATfnlqaryrsfdSNVTA 166
Cdd:PRK15187 101 QQDANQPG--SLANTAGAG-SATNVALQLYGPDGQALNIGESSStvtLNDGENVIPLSVDYIAT-----------GTATA 166

                        170
                 ....*....|...
gi 727185491 167 GLANATSPFTIEY 179
Cdd:PRK15187 167 GNVTATATFSMVY 179
PRK15210 PRK15210
fimbrial protein;
24-179 4.83e-04

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 39.30  E-value: 4.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  24 NGTVKFTGEIKQSTCQVTSDTQNKEVYLGTYPTSAFPTVGSKSASKAFQISLEKCdagdyslRFDGNTV-----AGNPDL 98
Cdd:PRK15210  34 SGKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNC-------AFDPNIPdtagsAGKMSK 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727185491  99 LSVSNVGG---------TGAAATGVGIEITDNNGKPFaIGDGSNINDDVAKVTIAadGKATFNLQARYRSFDSNVTAGLA 169
Cdd:PRK15210 107 VTVSFSGTantskkaytTSGSAQHVGVQLLKSDNTSI-IEPNTPMPDGDAQQLQA--GNNELNFFARLIALDNGVTPGDF 183

                        170
                 ....*....|
gi 727185491 170 NATSPFTIEY 179
Cdd:PRK15210 184 NASVTYTLKY 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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