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Conserved domains on  [gi|727181453|ref|WP_033643925|]
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MULTISPECIES: CsbD family protein [Serratia]

Protein Classification

CsbD family protein( domain architecture ID 10007103)

CsbD family protein similar to Lactococcus lactis UPF0337 protein YhjA

CATH:  1.10.1470.10
SCOP:  4002850

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-50 5.50e-12

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


:

Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 55.18  E-value: 5.50e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 727181453  1 MNSEKANGMMEKVAGKAQEIAGDVSGNERWQAEGVTRQAVGALQEKYGDA 50
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDA 50
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-50 5.50e-12

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 55.18  E-value: 5.50e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 727181453  1 MNSEKANGMMEKVAGKAQEIAGDVSGNERWQAEGVTRQAVGALQEKYGDA 50
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDA 50
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-50 2.33e-09

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 48.27  E-value: 2.33e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 727181453   4 EKANGMMEKVAGKAQEIAGDVSGNERWQAEGVTRQAVGALQEKYGDA 50
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDA 47
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-50 5.50e-12

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 55.18  E-value: 5.50e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 727181453  1 MNSEKANGMMEKVAGKAQEIAGDVSGNERWQAEGVTRQAVGALQEKYGDA 50
Cdd:COG3237   1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDA 50
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-50 2.33e-09

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 48.27  E-value: 2.33e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 727181453   4 EKANGMMEKVAGKAQEIAGDVSGNERWQAEGVTRQAVGALQEKYGDA 50
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDA 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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