|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
1-302 |
0e+00 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 518.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 1 MMLTKKNSEALEHFSEKLEVEGRSLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMES 80
Cdd:PRK15406 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
Cdd:PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 161 GQNILLIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
Cdd:PRK15406 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727180825 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
Cdd:PRK15406 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
22-298 |
1.27e-99 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 293.56 E-value: 1.27e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 22 GRSLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA--HWLGTDQLGRDVLSRLLYGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 102 RISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:COG1173 79 RISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 182 IVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:COG1173 159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 727180825 262 ANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG1173 239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
24-76 |
2.82e-14 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 65.90 E-value: 2.82e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 727180825 24 SLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAP 76
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
120-283 |
1.76e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 56.13 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 120 TLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQN--------ILLIFVAIGMVSWLDMARIVRGQTLGLK 191
Cdd:cd06261 20 LLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwgilpgLGLPALILALLLIAPFARLIRRAALESI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 192 RKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLsSWGALLSDGANSMEVSPWL 271
Cdd:cd06261 100 PKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-GTGLLLIFAILFPGDLGVA 178
|
170
....*....|..
gi 727180825 272 LLFPAGFLVVTL 283
Cdd:cd06261 179 AAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
1-302 |
0e+00 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 518.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 1 MMLTKKNSEALEHFSEKLEVEGRSLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMES 80
Cdd:PRK15406 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
Cdd:PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 161 GQNILLIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
Cdd:PRK15406 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727180825 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
Cdd:PRK15406 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
22-298 |
1.27e-99 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 293.56 E-value: 1.27e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 22 GRSLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA--HWLGTDQLGRDVLSRLLYGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 102 RISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:COG1173 79 RISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 182 IVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:COG1173 159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 727180825 262 ANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG1173 239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
23-300 |
2.85e-55 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 181.08 E-value: 2.85e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 23 RSLWQDARRRFMHNRAAVGS-LFILALITLfVVLAPMLSQF-AYDDTDWAMMSAAPSMEsgHYFGTDSSGRDLLVRVAIG 100
Cdd:PRK15082 22 RTPWHEFWRRFRRQHVALVAgLFVLLLIVV-AIFAPWIAPYdAENYFDYDALNAGPSLQ--HWFGVDSLGRDIFSRILVG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 101 GRISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMA 180
Cdd:PRK15082 99 ARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 181 RIVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSD 260
Cdd:PRK15082 179 RLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNE 258
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 727180825 261 GANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK15082 259 ARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
45-300 |
2.46e-46 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 158.06 E-value: 2.46e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 45 ILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGA 124
Cdd:PRK09881 39 IIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAA--HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGC 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 125 MSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVCGV 204
Cdd:PRK09881 117 LSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGA 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 205 STRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLF 284
Cdd:PRK09881 197 SRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAV 276
|
250
....*....|....*.
gi 727180825 285 CFNFIGDGLRDALDPK 300
Cdd:PRK09881 277 GFNLFGDGIRDLLDPK 292
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
43-299 |
5.50e-42 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 145.97 E-value: 5.50e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 43 LFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLY 122
Cdd:PRK10417 10 LIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQ--HWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 123 GAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVC 202
Cdd:PRK10417 88 GGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLS 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 203 GVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVT 282
Cdd:PRK10417 168 GAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFIS 247
|
250
....*....|....*..
gi 727180825 283 LFCFNFIGDGLRDALDP 299
Cdd:PRK10417 248 VMAFNLLGDALRDHLDP 264
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
62-300 |
2.38e-41 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 146.06 E-value: 2.38e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 62 FAYDDTDWAMMSAAPSMESG-HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRL 140
Cdd:COG4239 100 YSYDTINYDLPSPAPSPPSAeNWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRF 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 141 LEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLG 220
Cdd:COG4239 180 IEIWSSMPELYLLIILSSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMV 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 221 VVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEvSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:COG4239 260 ATLTFLPFILSGAITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQ-APWLGLSAFVVLALMLSLLVFIGEAVRDAFDPR 338
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
33-300 |
4.37e-36 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 131.06 E-value: 4.37e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 33 FMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
Cdd:PRK10913 26 FKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGgswaHILGTDDVGRDVLSRLMYGARLSLLVG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 109 VAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
Cdd:PRK10913 106 CLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRAAVL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 189 GLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
Cdd:PRK10913 186 VEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
|
250 260 270
....*....|....*....|....*....|..
gi 727180825 269 PWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK10913 266 WWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
52-299 |
2.31e-32 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 122.40 E-value: 2.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 52 FVVLAPMlsQFAYDDTDWAMMSAAPSMESG-HYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGAMSGYLG 130
Cdd:PRK15021 92 WVLWAPI--RFGATSINFATDKPFPSPPSRqNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYG 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 131 GKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVCGVSTRNIV 210
Cdd:PRK15021 170 GKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSII 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 211 LRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEvSPWLLLfpAGFLVVT--LFCFNF 288
Cdd:PRK15021 250 LRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQ-APWLGI--TAFLSVAilLSLLIF 326
|
250
....*....|.
gi 727180825 289 IGDGLRDALDP 299
Cdd:PRK15021 327 IGEAVRDAFDP 337
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
31-298 |
2.43e-25 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 102.59 E-value: 2.43e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 31 RRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSMESG----HYFGTDSSGRDLLVRVAIGGRISLM 106
Cdd:COG4171 21 QSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNgdvsFFLGTDDLGRDILSRLLYGARYTFG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 107 VGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQ 186
Cdd:COG4171 101 SALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIYQA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 187 TLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSME 266
Cdd:COG4171 181 VHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSLELIY 260
|
250 260 270
....*....|....*....|....*....|..
gi 727180825 267 VSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG4171 261 LAPWTVILPGLAIMFSVLIVNLVGDGLRRALN 292
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
24-298 |
6.49e-18 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 82.06 E-value: 6.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 24 SLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAPSM----ESGHYFGTDSSGRDLLVRVAI 99
Cdd:PRK15111 14 GTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWsrygEVSFFLGTDDLGRDVLSRLLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 100 GGRISLMVGVAAALVAVVVGTLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDM 179
Cdd:PRK15111 94 GAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRM 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 180 ARIVRGQTLGLKRKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLS 259
Cdd:PRK15111 174 VRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLG 253
|
250 260 270
....*....|....*....|....*....|....*....
gi 727180825 260 DGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:PRK15111 254 DSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
24-76 |
2.82e-14 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 65.90 E-value: 2.82e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 727180825 24 SLWQDARRRFMHNRAAVGSLFILALITLFVVLAPMLSQFAYDDTDWAMMSAAP 76
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
128-300 |
2.02e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 58.85 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 128 YLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNIL----LIFVAIGMVSWLDMARIVRGQTLGLKRKEFIEAALVCG 203
Cdd:pfam00528 11 RRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILghgiLPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 204 VSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEplsswGALLSDGANSMEVSpwLLLFPAGFLVVTL 283
Cdd:pfam00528 91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-----GLLLIEAILGYDYP--EIQGPVLAAALIL 163
|
170
....*....|....*..
gi 727180825 284 FCFNFIGDGLRDALDPK 300
Cdd:pfam00528 164 LLLNLLVDILQRLLDPR 180
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
120-283 |
1.76e-09 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 56.13 E-value: 1.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 120 TLYGAMSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQN--------ILLIFVAIGMVSWLDMARIVRGQTLGLK 191
Cdd:cd06261 20 LLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwgilpgLGLPALILALLLIAPFARLIRRAALESI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727180825 192 RKEFIEAALVCGVSTRNIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLsSWGALLSDGANSMEVSPWL 271
Cdd:cd06261 100 PKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-GTGLLLIFAILFPGDLGVA 178
|
170
....*....|..
gi 727180825 272 LLFPAGFLVVTL 283
Cdd:cd06261 179 AAVALILLLLSL 190
|
|
| |
