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Conserved domains on  [gi|727169744|ref|WP_033638018|]
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MULTISPECIES: YceK/YidQ family lipoprotein [Serratia]

Protein Classification

YceK/YidQ family lipoprotein( domain architecture ID 10013448)

YceK/YidQ family lipoprotein is a DUF1375 domain-containing protein; similar to Escherichia coli protein YceK

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10175 PRK10175
YceK/YidQ family lipoprotein;
7-81 8.28e-46

YceK/YidQ family lipoprotein;


:

Pssm-ID: 182286  Cd Length: 75  Bit Score: 141.05  E-value: 8.28e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727169744  7 LRLACVAAGVMALTGCGSIISRTVPGAGHGHQYYPGVQWDLRDTPWRYVTVIDVPLSMVVDTFMLPFDAQHGPYE 81
Cdd:PRK10175  1 MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYITILDLPFSLVFDTLLLPIDIHHGPYE 75
 
Name Accession Description Interval E-value
PRK10175 PRK10175
YceK/YidQ family lipoprotein;
7-81 8.28e-46

YceK/YidQ family lipoprotein;


Pssm-ID: 182286  Cd Length: 75  Bit Score: 141.05  E-value: 8.28e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727169744  7 LRLACVAAGVMALTGCGSIISRTVPGAGHGHQYYPGVQWDLRDTPWRYVTVIDVPLSMVVDTFMLPFDAQHGPYE 81
Cdd:PRK10175  1 MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYITILDLPFSLVFDTLLLPIDIHHGPYE 75
YceK COG5645
Uncharacterized conserved protein YceK [Function unknown];
7-81 1.25e-12

Uncharacterized conserved protein YceK [Function unknown];


Pssm-ID: 444368  Cd Length: 100  Bit Score: 57.72  E-value: 1.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727169744   7 LRLACVAAGVMALTGCGSIISRTVPGAGhghqYYPGVQWDLR-----DTPW--RYVTVIDVPLSMVVDTFMLPFDAQHGP 79
Cdd:COG5645    6 LKALLLLLGLLLLSGCSSVMTHTGPKEG----YYPGTRADVEmlkddDTGWgmKPLLALDLPFSAVLDTLLLPYDYYRSD 81


                 ..
gi 727169744  80 YE 81
Cdd:COG5645   82 SD 83
DUF1375 pfam07119
Protein of unknown function (DUF1375); This family consists of several hypothetical, putative ...
 39-74 2.22e-04

Protein of unknown function (DUF1375); This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.


Pssm-ID: 429301  Cd Length: 53  Bit Score: 35.41  E-value: 2.22e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 727169744  39 YYPGVQWDLRD--------TPWRY------VTVIDVPLSMVVDTFMLPFD 74
Cdd:pfam07119  3 VYSGTRLDVCRlsgggaypVAGWVsialppLLVVDLPVSLVLDTLLLPYD 52
 
Name Accession Description Interval E-value
PRK10175 PRK10175
YceK/YidQ family lipoprotein;
7-81 8.28e-46

YceK/YidQ family lipoprotein;


Pssm-ID: 182286  Cd Length: 75  Bit Score: 141.05  E-value: 8.28e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727169744  7 LRLACVAAGVMALTGCGSIISRTVPGAGHGHQYYPGVQWDLRDTPWRYVTVIDVPLSMVVDTFMLPFDAQHGPYE 81
Cdd:PRK10175  1 MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDSAWRYITILDLPFSLVFDTLLLPIDIHHGPYE 75
YceK COG5645
Uncharacterized conserved protein YceK [Function unknown];
7-81 1.25e-12

Uncharacterized conserved protein YceK [Function unknown];


Pssm-ID: 444368  Cd Length: 100  Bit Score: 57.72  E-value: 1.25e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727169744   7 LRLACVAAGVMALTGCGSIISRTVPGAGhghqYYPGVQWDLR-----DTPW--RYVTVIDVPLSMVVDTFMLPFDAQHGP 79
Cdd:COG5645    6 LKALLLLLGLLLLSGCSSVMTHTGPKEG----YYPGTRADVEmlkddDTGWgmKPLLALDLPFSAVLDTLLLPYDYYRSD 81


                 ..
gi 727169744  80 YE 81
Cdd:COG5645   82 SD 83
PRK11616 PRK11616
hypothetical protein; Provisional
 3-74 1.81e-09

hypothetical protein; Provisional


Pssm-ID: 183233  Cd Length: 109  Bit Score: 49.78  E-value: 1.81e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727169744   3 LSSYLRLACVAAGVMALTGCGSIISRTVPGAGhghqYYPGVQWDLR-----DTPW--RYVTVIDVPLSMVVDTFMLPFD 74
Cdd:PRK11616   1 IRNVLLAFMICSGMLLLSGCSSVMSHTGGKEG----TYPGTRASATmlgddETNWgtKSLAALDMPFTAVMDTLLLPWD 75
DUF1375 pfam07119
Protein of unknown function (DUF1375); This family consists of several hypothetical, putative ...
 39-74 2.22e-04

Protein of unknown function (DUF1375); This family consists of several hypothetical, putative lipoproteins of around 80 residues in length. Members of this family seem to be specific to the Class Gammaproteobacteria. The function of this family is unknown.


Pssm-ID: 429301  Cd Length: 53  Bit Score: 35.41  E-value: 2.22e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 727169744  39 YYPGVQWDLRD--------TPWRY------VTVIDVPLSMVVDTFMLPFD 74
Cdd:pfam07119  3 VYSGTRLDVCRlsgggaypVAGWVsialppLLVVDLPVSLVLDTLLLPYD 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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