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Conserved domains on  [gi|705426903|ref|WP_033507455|]
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Fe-S cluster assembly sulfur transfer protein SufU [Bifidobacterium pullorum]

Protein Classification

iron-sulfur cluster assembly scaffold protein( domain architecture ID 10002784)

iron-sulfur cluster assembly scaffold protein, such as Escherichia coli IscU, on which IscS assembles Fe-S clusters

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IscU COG0822
Fe-S cluster assembly scaffold protein IscU, NifU family [Posttranslational modification, ...
 9-183 5.96e-42

Fe-S cluster assembly scaffold protein IscU, NifU family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440584  Cd Length: 128  Bit Score: 137.28  E-value: 5.96e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   9 DLEQMYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDGgdgrphTI 88
Cdd:COG0822    1 DLDDLYSEKILDHAKNPRNVGELED----------------------ADGSGEGGNPLCGDTVTLYLKVDDG------RI 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  89 ERLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAglfhqlmdsrgaglsdesaeEDLGDAVVFQGVSKYPMRIKCALL 168
Cdd:COG0822   53 EDAKFEGFGCAISQASASMLTELVKGKTLEEALALT--------------------DEFGDLAALGGLPKFPARVKCALL 112

                        170
                 ....*....|....*
gi 705426903 169 GWEGMKASVAEALAR 183
Cdd:COG0822  113 AWDALKAALADYRAK 127
 
Name Accession Description Interval E-value
IscU COG0822
Fe-S cluster assembly scaffold protein IscU, NifU family [Posttranslational modification, ...
 9-183 5.96e-42

Fe-S cluster assembly scaffold protein IscU, NifU family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440584  Cd Length: 128  Bit Score: 137.28  E-value: 5.96e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   9 DLEQMYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDGgdgrphTI 88
Cdd:COG0822    1 DLDDLYSEKILDHAKNPRNVGELED----------------------ADGSGEGGNPLCGDTVTLYLKVDDG------RI 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  89 ERLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAglfhqlmdsrgaglsdesaeEDLGDAVVFQGVSKYPMRIKCALL 168
Cdd:COG0822   53 EDAKFEGFGCAISQASASMLTELVKGKTLEEALALT--------------------DEFGDLAALGGLPKFPARVKCALL 112

                        170
                 ....*....|....*
gi 705426903 169 GWEGMKASVAEALAR 183
Cdd:COG0822  113 AWDALKAALADYRAK 127
SUF_scaf_2 TIGR01994
SUF system FeS assembly protein, NifU family; Three iron-sulfur cluster assembly systems are ...
 10-178 1.36e-38

SUF system FeS assembly protein, NifU family; Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 273918  Cd Length: 137  Bit Score: 128.98  E-value: 1.36e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   10 LEQMYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDggdgrpHTIE 89
Cdd:TIGR01994   1 LDSLYRQVILDHYKNPRHRGKLED----------------------ATVQERGHNPTCGDEITLTVKLEG------DRIE 52

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   90 RLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAGLFHQLMDSRGaglsDESAEEDLGDAVVFQGVSKYPMRIKCALLG 169
Cdd:TIGR01994  53 DIAFEGEGCSISQASASMMTELIKGKTVEEALSLVEAFSEMIQGQE----TDEDEEKLGDAEALAGVAKFPARIKCATLA 128


                  ....*....
gi 705426903  170 WEGMKASVA 178
Cdd:TIGR01994 129 WKALERALA 137
IscU_like cd06664
Iron-sulfur cluster scaffold-like proteins; IscU_like and NifU_like proteins. IscU and NifU ...
 13-175 3.28e-32

Iron-sulfur cluster scaffold-like proteins; IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.


Pssm-ID: 143480  Cd Length: 123  Bit Score: 112.34  E-value: 3.28e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  13 MYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDGgdgrphTIERLV 92
Cdd:cd06664    1 LYSEIILDHYRNPRNVGRLED----------------------ADGTGEVGNPLCGDEITLYLKVEDG------RITDAK 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  93 WDGHGCSISQASLSIMVDLVEGKTVDEAMRLAGLFHQLMDsrgaglsdesaeeDLGDAVVFQGVSKYPMRIKCALLGWEG 172
Cdd:cd06664   53 FQGFGCAISIASASLLTELIKGKTLDEALKLLNKDIAMLD-------------GKEELAALAGVGLPPARIHCALLAWKA 119


                 ...
gi 705426903 173 MKA 175
Cdd:cd06664  120 LKA 122
NifU_N pfam01592
NifU-like N terminal domain; This domain is found in NifU in combination with pfam01106. This ...
 64-166 7.09e-16

NifU-like N terminal domain; This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters.


Pssm-ID: 426336  Cd Length: 127  Bit Score: 70.13  E-value: 7.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   64 NPTCGDEATIHAEVSDGGDgrphTIERLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAGL-FHQLMDSRGAGLSDES 142
Cdd:pfam01592  31 NPACGDAMRLQIKVDESTD----RIEDAKFKTFGCGSAIASSSMLTELVKGKTIEEALKITNTdIAEELGGLPPVKMHCS 106

                          90       100
                  ....*....|....*....|....
gi 705426903  143 aeeDLGDAVVFQGVSKYPMRIKCA 166
Cdd:pfam01592 107 ---VLADDALKAAIADYPGKNKCA 127
 
Name Accession Description Interval E-value
IscU COG0822
Fe-S cluster assembly scaffold protein IscU, NifU family [Posttranslational modification, ...
 9-183 5.96e-42

Fe-S cluster assembly scaffold protein IscU, NifU family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440584  Cd Length: 128  Bit Score: 137.28  E-value: 5.96e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   9 DLEQMYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDGgdgrphTI 88
Cdd:COG0822    1 DLDDLYSEKILDHAKNPRNVGELED----------------------ADGSGEGGNPLCGDTVTLYLKVDDG------RI 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  89 ERLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAglfhqlmdsrgaglsdesaeEDLGDAVVFQGVSKYPMRIKCALL 168
Cdd:COG0822   53 EDAKFEGFGCAISQASASMLTELVKGKTLEEALALT--------------------DEFGDLAALGGLPKFPARVKCALL 112

                        170
                 ....*....|....*
gi 705426903 169 GWEGMKASVAEALAR 183
Cdd:COG0822  113 AWDALKAALADYRAK 127
SUF_scaf_2 TIGR01994
SUF system FeS assembly protein, NifU family; Three iron-sulfur cluster assembly systems are ...
 10-178 1.36e-38

SUF system FeS assembly protein, NifU family; Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 273918  Cd Length: 137  Bit Score: 128.98  E-value: 1.36e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   10 LEQMYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDggdgrpHTIE 89
Cdd:TIGR01994   1 LDSLYRQVILDHYKNPRHRGKLED----------------------ATVQERGHNPTCGDEITLTVKLEG------DRIE 52

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   90 RLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAGLFHQLMDSRGaglsDESAEEDLGDAVVFQGVSKYPMRIKCALLG 169
Cdd:TIGR01994  53 DIAFEGEGCSISQASASMMTELIKGKTVEEALSLVEAFSEMIQGQE----TDEDEEKLGDAEALAGVAKFPARIKCATLA 128


                  ....*....
gi 705426903  170 WEGMKASVA 178
Cdd:TIGR01994 129 WKALERALA 137
IscU_like cd06664
Iron-sulfur cluster scaffold-like proteins; IscU_like and NifU_like proteins. IscU and NifU ...
 13-175 3.28e-32

Iron-sulfur cluster scaffold-like proteins; IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.


Pssm-ID: 143480  Cd Length: 123  Bit Score: 112.34  E-value: 3.28e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  13 MYQEVILEASRNPHGRERFAPdlaseqsaqagesvvrasheycAAGESHQFNPTCGDEATIHAEVSDGgdgrphTIERLV 92
Cdd:cd06664    1 LYSEIILDHYRNPRNVGRLED----------------------ADGTGEVGNPLCGDEITLYLKVEDG------RITDAK 52

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903  93 WDGHGCSISQASLSIMVDLVEGKTVDEAMRLAGLFHQLMDsrgaglsdesaeeDLGDAVVFQGVSKYPMRIKCALLGWEG 172
Cdd:cd06664   53 FQGFGCAISIASASLLTELIKGKTLDEALKLLNKDIAMLD-------------GKEELAALAGVGLPPARIHCALLAWKA 119


                 ...
gi 705426903 173 MKA 175
Cdd:cd06664  120 LKA 122
NifU_N pfam01592
NifU-like N terminal domain; This domain is found in NifU in combination with pfam01106. This ...
 64-166 7.09e-16

NifU-like N terminal domain; This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters.


Pssm-ID: 426336  Cd Length: 127  Bit Score: 70.13  E-value: 7.09e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705426903   64 NPTCGDEATIHAEVSDGGDgrphTIERLVWDGHGCSISQASLSIMVDLVEGKTVDEAMRLAGL-FHQLMDSRGAGLSDES 142
Cdd:pfam01592  31 NPACGDAMRLQIKVDESTD----RIEDAKFKTFGCGSAIASSSMLTELVKGKTIEEALKITNTdIAEELGGLPPVKMHCS 106

                          90       100
                  ....*....|....*....|....
gi 705426903  143 aeeDLGDAVVFQGVSKYPMRIKCA 166
Cdd:pfam01592 107 ---VLADDALKAAIADYPGKNKCA 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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