|
Name |
Accession |
Description |
Interval |
E-value |
| flgD |
PRK06655 |
flagellar hook assembly protein FlgD; |
1-236 |
7.84e-87 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 235847 [Multi-domain] Cd Length: 225 Bit Score: 256.41 E-value: 7.84e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 1 MSIAVNVNDPTNSGVNNTKSTTGSNSltgsNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTT 80
Cdd:PRK06655 1 MSIANTVGSSSTSGLSTTSSSSSSKK----GAADLQDDFLTLLVAQLKNQDPLNPMDNSQMTSQLAQFSTVSGIEKLNTT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 81 LGSVSGQINSAQSLQAASLIGHGVMIPGTTILAGtsttdgntTTTTTPFGVELQQPAEKVTATITDANNVVVRTIDIGEL 160
Cdd:PRK06655 77 LGSLSSQMTSSQALQASSLVGRGVLVPGDTVLVG--------TGGTTPFGVELPSAADNVTVTITDSAGQVVRTIDLGAQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 695724233 161 KAGVHTFTWDGSLTDGTKAPNGSYKVAISASNGTTQLVAQPLQFALVQGVIKGSDGNKLDLGTSGST-TLDEVRQII 236
Cdd:PRK06655 149 SAGVVSFTWDGTDTDGNALPDGNYTIKASASVGGKQLVAQTLTYANVQSVSLGANGGGLDLNLAGTGvTLSDVRQIL 225
|
|
| FlgD |
COG1843 |
Flagellar hook-capping protein FlgD [Cell motility]; |
8-235 |
4.21e-69 |
|
Flagellar hook-capping protein FlgD [Cell motility];
Pssm-ID: 441448 [Multi-domain] Cd Length: 223 Bit Score: 211.40 E-value: 4.21e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 8 NDPTNSGVNNTKSTTGSNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQ 87
Cdd:COG1843 2 ATSSSSSVLSSLSTSSTSSSSSSSSSLGKDDFLKLLVAQLQNQDPLNPMDNTEFIAQLAQFSTVEQIENLNTTLESLASS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 88 INSAQSLQAASLIGHGVMIPGTTILAGtsttdgnttTTTTPFGVELQQPAEKVTATITDANNVVVRTIDIGELKAGVHTF 167
Cdd:COG1843 82 LTSSQALQASSLIGKEVLVEGNTISLD---------GGSASGGFELPSAADSVTVTITDANGNVVRTIDLGAQSAGVHTF 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695724233 168 TWDGSLTDGTKAPNGSYKVAISASNGTTQLVAQPLQFALVQGVIKGSDGNKLDLGTSGSTTLDEVRQI 235
Cdd:COG1843 153 TWDGTDDDGNALPDGTYTFSVEATDDGEPVTATTLVYGKVTSVTLSGGGPVLNLGGGGSVPLSDVTEI 220
|
|
| flgD |
PRK12633 |
flagellar basal body rod modification protein; Provisional |
15-236 |
4.64e-60 |
|
flagellar basal body rod modification protein; Provisional
Pssm-ID: 183638 [Multi-domain] Cd Length: 230 Bit Score: 188.64 E-value: 4.64e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 15 VNNTKSTTG---SNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQINSA 91
Cdd:PRK12633 4 VNETTSQAGlalAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 92 QSLQAASLIGHGVMIPGTTILAGtSTTDGNTTTTTTPFGVELQQPAEKVTATITDANNVVVRTIDIGELKAGVHTFTWDG 171
Cdd:PRK12633 84 QSMDAVSMIGKGVLMPGDKVSLG-TDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDG 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 695724233 172 SLTDGTKAPNGSYKVAISASNGTTQLV-AQPLQFALVQGVIKGSDGNKLDLGTSGSTTLDEVRQII 236
Cdd:PRK12633 163 NNDGGQPLADGKYSITVSASDADAKPVkAEALTYGQVKSVAYSTNGLRLDLGLAGQISMLDVRKVI 228
|
|
| FLgD_tudor |
pfam13861 |
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in ... |
91-233 |
2.68e-37 |
|
FlgD Tudor-like domain; This domain has a tudor domain-like beta barrel fold. It is found in the FlgD protein the flagellar hook capping protein. The structure for this domain shows that it contains a nested Ig-like domain within it. However in some firmicute proteins this inserted domain is absent such as Q67K21.
Pssm-ID: 433533 Cd Length: 136 Bit Score: 127.33 E-value: 2.68e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 91 AQSLQAASLIGHGVMIPGTTILAGTSTTDgnttttttPFGVELQQPAEKVTATITDANNVVVRTIDIGELKAGVHTFTWD 170
Cdd:pfam13861 1 SQALQAASLIGKEVLVPGDTISLSADGGA--------TGGVELPSAADNVTVTIYDSSGQVVRTIDLGAQAAGNVSFTWD 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 695724233 171 GSLTDGTKAPNGSYKVAISASNGTTQLVAQPLQFALVQGVIKGSDGN-KLDLGTSGSTTLDEVR 233
Cdd:pfam13861 73 GKDSDGNQLPDGTYTFSVTATADGTSVAVTTLVYGTVDSVSLGGDGGpLLNLGLGGTVPLSDVR 136
|
|
| flgD |
PRK12634 |
flagellar basal body rod modification protein; Reviewed |
8-235 |
4.84e-29 |
|
flagellar basal body rod modification protein; Reviewed
Pssm-ID: 183639 [Multi-domain] Cd Length: 221 Bit Score: 108.86 E-value: 4.84e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 8 NDPTNSGVNNTKSTTGSNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQ 87
Cdd:PRK12634 1 MSTIASDLYKSLGLSTSSKTAKKEEALGQADFLKLMTEQLQHQDPLKPMENSAFLGQLAQFSTVQGIGDLNTKVSNFSDS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 88 INSAQSLQAASLIGHGVMIPGTTILAGTSTTDGnttttttpfGVELQQPAEKVTATITDANNVVVRTIDIGELKAGVHTF 167
Cdd:PRK12634 81 MSSDQVLKGAALVGHNVLVPSAQVAIDATGSAK---------GVVAATSAGFVNFEITDANGAFVKQISVPASAAGEVSF 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 168 TWDGSLTDGTKAPNGSYKVAISASN--GTTQLVAQPLQfALVQGVIKGSDGNKLDLGTSGSTTLDEVRQI 235
Cdd:PRK12634 152 AWDGTDANGNRMAAGKYGVTATQTDtaGSKSKLSTYVQ-APVDSVTIGSDGLYLNLTGLGTSPLANVLRV 220
|
|
| FlgD |
pfam03963 |
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required ... |
11-83 |
1.45e-20 |
|
Flagellar hook capping protein - N-terminal region; FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum. It appears to act as a hook-capping protein to enable assembly of hook protein subunits. FlgD regulates the assembly of the hook cap structure to prevent leakage of hook monomers into the medium and hook monomer polymerization and also plays a role in determination of the correct hook length, with the help of the FliK protein. This family represents the N-terminal conserved region of FlgD. A recent crystal structure showed that this region was likely to be flexible and was cleaved off during crystallization.
Pssm-ID: 427619 [Multi-domain] Cd Length: 75 Bit Score: 82.29 E-value: 1.45e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695724233 11 TNSGVNNTKSTTGSNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGS 83
Cdd:pfam03963 3 STNSSSTTSTSSSSSTSAKSSSTLGKDDFLKLLTTQLQNQDPLNPMDNTQFTSQLAQFSSVEQIEKLNKTLDS 75
|
|
| flgD |
PRK12812 |
flagellar basal body rod modification protein; Reviewed |
6-203 |
3.30e-20 |
|
flagellar basal body rod modification protein; Reviewed
Pssm-ID: 139245 [Multi-domain] Cd Length: 259 Bit Score: 86.08 E-value: 3.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 6 NVNDPTNSGVNNTKSTTGSNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVS 85
Cdd:PRK12812 16 STTTKSASTSGATRTDSSSSTGSNPNSQLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTMQKLV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 86 GQINSAQSLQAASLIGHGVMIpgttilaGTSTTDGNTTTTTTPFGVELQQPAEKVTATITDANNVVVRTIDIGELKAGVH 165
Cdd:PRK12812 96 EQMQSSMSTSALSALGKMATV-------SDNAVKLTGADELIALKLYFPEDSDEGTLEIYDSNNKLVEKIDFKEISQGLF 168
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 695724233 166 TFTWDGSLTDGTKAPNGSYKVAISASN-----GTTQLVAQPLQ 203
Cdd:PRK12812 169 TMEWDGRDNDGVYAGDGEYTIKAVYNNkngekITANYGTYPVE 211
|
|
| flgD |
PRK09619 |
flagellar hook assembly protein FlgD; |
8-193 |
9.91e-20 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 181996 [Multi-domain] Cd Length: 218 Bit Score: 84.07 E-value: 9.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 8 NDPTNSGVNnTKSTTGSNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQ 87
Cdd:PRK09619 3 INESRNSAN-VGNQSPAPEGGLPGAEQLNNQFMTLLVAQIQNQDPLNPADGTEFVSQLAQLSQVQSTENMAKLMKSNTVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 88 INSAQSLQAASLIGHGVMIPGTTILAGTSTTDGNttttttpfgVELQQPAEKVTATITDANNvVVRTIDIGELKAGVHTF 167
Cdd:PRK09619 82 MDNMQTLATANLVGQQVMVESHEITLGEDPVAGR---------LTLKHPAPTLTLHITDILG-QEKKIDLGKQPAGPVNF 151
|
170 180
....*....|....*....|....*.
gi 695724233 168 TWDgslTDGTKAPNGSYKVAISASNG 193
Cdd:PRK09619 152 TLD---PAALGLQPGQYQLSVVSGSG 174
|
|
| FlgD_ig |
pfam13860 |
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found ... |
129-193 |
1.74e-17 |
|
FlgD Ig-like domain; This domains has an immunoglobulin like beta sandwich fold. It is found in the FlgD protein the flagellar hook capping protein. THe structure for this domain shows that it is inserted within a TUDOR like beta barrel domain.
Pssm-ID: 433532 [Multi-domain] Cd Length: 78 Bit Score: 74.31 E-value: 1.74e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695724233 129 FGVELQQPAEKVTATITDANNVVVRTIDIGELKAGVHTFTWDGSLTDGTKAPNGSYKVAISASNG 193
Cdd:pfam13860 14 VELTLPSPADSVTVTIYDAAGQLVRTIDLGAQSAGDVSFTWDGTDDDGNKLADGTYTFSVSATTG 78
|
|
| flgD |
PRK12813 |
flagellar basal body rod modification protein; Reviewed |
6-221 |
3.20e-15 |
|
flagellar basal body rod modification protein; Reviewed
Pssm-ID: 237214 [Multi-domain] Cd Length: 223 Bit Score: 72.06 E-value: 3.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 6 NVNDPTNSGVNNTKSTTGSNSLTGSNAADLQgSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVS 85
Cdd:PRK12813 3 IVTGTVTSPGTTTGSSRGSASAASALTSDFE-TFLRMLTTQLQNQDPLNPMDSSDYAAQLATFSGVEQQVKTNDLLTGLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 86 GQINSAQSLQAASLIGHGVMIPGTTILAGtsttdgntttttTPFGVELQQP--AEKVTATITDANNVVVRTIDIGelkAG 163
Cdd:PRK12813 82 ASLGVMGLSQLAGWIGREARAEAPVWFDG------------TPVTISPNPAadADKAELVVRDAAGAEVARETVP---VG 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 695724233 164 VHTFTWDGSLTDGTKAPNGSYKVAISASNGTTQLVAQPLQ-FALVQGVIKGSDGNKLDL 221
Cdd:PRK12813 147 AGPVEWAGEDADGNPLPNGAYSFVVESYSGGELLDTEPAEvYSRIVEAQGGSGGTVLVL 205
|
|
| flgD |
PRK06009 |
flagellar hook assembly protein FlgD; |
7-105 |
3.41e-12 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 235670 [Multi-domain] Cd Length: 140 Bit Score: 62.03 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 7 VNDPTNSGVNNTKSTTGSNSLTGSNAADLQGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSvsg 86
Cdd:PRK06009 6 TTSATSSSTTSSTSTASNSTSAANKASVNYDSFLQLLIAQMKNQDPTDPMDATQYVSQLATFSQVEQSIQTNSKLDT--- 82
|
90 100
....*....|....*....|
gi 695724233 87 qINSAQSL-QAASLIGHGVM 105
Cdd:PRK06009 83 -LLASSSLtQAEGLIGRTVT 101
|
|
| flgD |
PRK05842 |
flagellar hook assembly protein FlgD; |
38-186 |
2.94e-09 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 235621 [Multi-domain] Cd Length: 295 Bit Score: 56.16 E-value: 2.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 38 SFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQINSAQ------------------------- 92
Cdd:PRK05842 32 AFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSNKetneslkdfqgalkdtmenlnkgmd 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 93 -------------SLQAASLIGHGVmipgTTILAGTSTTDGNTTTTTTPFGVELQQPAEKVTATITDANNVVVRTIDIG- 158
Cdd:PRK05842 112 dslkannalrevsALNSVSMIGKIA----ETDVSGANFDGNNKLSFSLFFDEKIDASKGVPAIQILNENNELVKTIPLKd 187
|
170 180
....*....|....*....|....*....
gi 695724233 159 -ELKAGVHTFTWDGSLTDGTKAPNGSYKV 186
Cdd:PRK05842 188 yNGQKGYINFEWDGLNEKGEKVPKGNYKI 216
|
|
| flgD |
PRK09618 |
flagellar hook assembly protein FlgD; |
11-101 |
5.81e-09 |
|
flagellar hook assembly protein FlgD;
Pssm-ID: 236594 [Multi-domain] Cd Length: 142 Bit Score: 53.08 E-value: 5.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 11 TNSGVNNTKSTTGSNSLTGSNAADLQG--SFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGqi 88
Cdd:PRK09618 2 TMTGIDSSLWLANSKKAERRTGNQNLGkdDFLKLLITQLQNQDPTNPMEDKEFIAQMAQFSSLEQMTNMNKSMEKLVS-- 79
|
90
....*....|...
gi 695724233 89 NSAQSLQAASLIG 101
Cdd:PRK09618 80 SSDGLTKYSELIG 92
|
|
| flgD |
PRK11911 |
flagellar basal body rod modification protein; Provisional |
24-104 |
9.89e-05 |
|
flagellar basal body rod modification protein; Provisional
Pssm-ID: 138812 [Multi-domain] Cd Length: 140 Bit Score: 41.36 E-value: 9.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 24 SNSLTGSNAADL-QGSFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSGQINSAQSLQAASLIGH 102
Cdd:PRK11911 15 NNAVTSSVSKTLgKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGK 94
|
..
gi 695724233 103 GV 104
Cdd:PRK11911 95 DI 96
|
|
| COG3656 |
COG3656 |
Predicted periplasmic protein [Function unknown]; |
161-215 |
7.79e-04 |
|
Predicted periplasmic protein [Function unknown];
Pssm-ID: 442873 Cd Length: 161 Bit Score: 38.73 E-value: 7.79e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 161 KAGVHTFTWDGSLTDGTKAPNGSYKVAISAS--NGTTQLVAQPLQF---ALVQGVIKGSD 215
Cdd:COG3656 91 PPGEHTLVWDGKDDAGNPLPPGKYTLVVEAAreVGGRELVRQPFTWpgkAAQTAEAKGSS 150
|
|
| flgD |
PRK06792 |
flagellar basal body rod modification protein; Validated |
12-90 |
2.30e-03 |
|
flagellar basal body rod modification protein; Validated
Pssm-ID: 180695 [Multi-domain] Cd Length: 190 Bit Score: 37.69 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695724233 12 NSGVNNTKSTTGSNSLTGSNAADLQG-----SFLTLLVAQLKNQDPTNPMQNNELTTQLAQISTVSGIEKLNTTLGSVSG 86
Cdd:PRK06792 24 NASVTGAQSTAQQANGVSASTQKTPGimdkdDFLKLFLASFQHQDPFNAMDMNQMMNQTAQLSLMEQVQNMTKAVDKLQS 103
|
....
gi 695724233 87 QINS 90
Cdd:PRK06792 104 TMYS 107
|
|
| |
