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Conserved domains on  [gi|695716623|ref|WP_032645228|]
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MULTISPECIES: carph-isopro domain-containing protein [Enterobacteriaceae]

Protein Classification

transcriptional regulator( domain architecture ID 10008341)

helix-turn-helix-type transcriptional regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdaS COG4197
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];
5-67 3.94e-17

DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];


:

Pssm-ID: 443351  Cd Length: 68  Bit Score: 67.63  E-value: 3.94e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695716623  5 IERAIDAAGGVNALARAIGVKQPSVSRWRK-VGVVGVEHVPDVAAFTG--IPAHELRPDKP--KLFPH 67
Cdd:COG4197   1 LEKAIEALGSQSALARALGVSQQAVSQWLNgKRRVPAERCLAIERATGgaVTREELRPDLDwaYLWPE 68
 
Name Accession Description Interval E-value
YdaS COG4197
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];
5-67 3.94e-17

DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];


Pssm-ID: 443351  Cd Length: 68  Bit Score: 67.63  E-value: 3.94e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695716623  5 IERAIDAAGGVNALARAIGVKQPSVSRWRK-VGVVGVEHVPDVAAFTG--IPAHELRPDKP--KLFPH 67
Cdd:COG4197   1 LEKAIEALGSQSALARALGVSQQAVSQWLNgKRRVPAERCLAIERATGgaVTREELRPDLDwaYLWPE 68
YdaS_antitoxin pfam15943
Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family ...
 5-66 8.85e-15

Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.


Pssm-ID: 435033  Cd Length: 65  Bit Score: 61.59  E-value: 8.85e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695716623   5 IERAIDAAGGVNALARAIGVKQPSVSRWRK-VGVVGVEHVPDVAAFTG--IPAHELRPDKPKLFP 66
Cdd:pfam15943  1 IKKAIEIVGGQKALAEALGVTQQAVSQWLHgKKGIPAEYCPAIERATSgkVTREELRPDVDWEFI 65
 
Name Accession Description Interval E-value
YdaS COG4197
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];
5-67 3.94e-17

DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription];


Pssm-ID: 443351  Cd Length: 68  Bit Score: 67.63  E-value: 3.94e-17
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695716623  5 IERAIDAAGGVNALARAIGVKQPSVSRWRK-VGVVGVEHVPDVAAFTG--IPAHELRPDKP--KLFPH 67
Cdd:COG4197   1 LEKAIEALGSQSALARALGVSQQAVSQWLNgKRRVPAERCLAIERATGgaVTREELRPDLDwaYLWPE 68
YdaS_antitoxin pfam15943
Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family ...
 5-66 8.85e-15

Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.


Pssm-ID: 435033  Cd Length: 65  Bit Score: 61.59  E-value: 8.85e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695716623   5 IERAIDAAGGVNALARAIGVKQPSVSRWRK-VGVVGVEHVPDVAAFTG--IPAHELRPDKPKLFP 66
Cdd:pfam15943  1 IKKAIEIVGGQKALAEALGVTQQAVSQWLHgKKGIPAEYCPAIERATSgkVTREELRPDVDWEFI 65
P22_Cro pfam14549
DNA-binding transcriptional regulator Cro; Bacteriophage P22 Cro protein represses genes ...
 6-35 8.03e-03

DNA-binding transcriptional regulator Cro; Bacteriophage P22 Cro protein represses genes normally expressed in early phage development and is necessary for the late stage of lytic growth. It does this by binding to the OL and OR operator-regions normally used by the repressor protein for lysogenic maintenance.


Pssm-ID: 405268  Cd Length: 60  Bit Score: 31.19  E-value: 8.03e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 695716623   6 ERAIDAAGGVNALARAIGVKQPSVSRWRKV 35
Cdd:pfam14549  3 KDVIAHFGGVSKVAKALGVTPGAVSQWGED 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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