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Conserved domains on  [gi|695713877|ref|WP_032644726|]
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MULTISPECIES: lipid A hydroxylase LpxO [Enterobacter cloacae complex]

Protein Classification

aspartyl/asparaginyl beta-hydroxylase domain-containing protein( domain architecture ID 14341623)

aspartyl/asparaginyl beta-hydroxylase domain-containing protein similar to Pseudomonas aeruginosa lipopolysaccharide biosynthetic protein LpxO, a Fe2+/alpha-ketoglutarate-dependent dioxygenase homolog

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
lipid_A_LpxO NF033391
lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the ...
16-297 0e+00

lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.


:

Pssm-ID: 468010  Cd Length: 297  Bit Score: 589.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  16 YAHSRGKEKQTLSRQLFDHSTFMAPINMFMTAFSSLPArQPFFETERFPELNTLTENWQVIREEAVRLQD--HIKAAQNN 93
Cdd:NF033391  14 YVHFRGRVRHKFSRQLSDHSTFMAPINCFMYLFSRVPN-TPYLPTEEFPELQPLQDNWEVIRDEALALQEagHIKAAEKY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  94 NDAGFNTFFKRGWKRFYLKWYADAHPSAQALCPVTTRLVSQIPCVKAAMFAELPAGAKLGKHRDPYAGSVRYHLGLSTPN 173
Cdd:NF033391  93 NDAGFNSFFKTGWKRFYLKWYDDAHPSAEALCPRTTALLRSIPSVKAAMFAELPPGSRLVRHRDPYAGSLRYHLGLATPN 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 174 DDRCFIEVDQQRHSWRDGEAVIFDETYVHWAENKTDRTRIILFCDIERPMKWRWAQAVNHWVGTTLMSAASSPNDDNDRT 253
Cdd:NF033391 173 DDRCFIEVDGQRYSWRDGEAVVFDETYIHYAENKTDQNRIILFCDIERPMKYRWAQAVNRWFGRNLMSAAASPNDEGDRT 252
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 695713877 254 GGINRIFKYVHAGRERGQRLKKRNRKAYYALKYLCISAIFAALL 297
Cdd:NF033391 253 GGINRLFKYVYAIRLKGKRLKKRNRTLYYLLKWALFGGIAALII 296
 
Name Accession Description Interval E-value
lipid_A_LpxO NF033391
lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the ...
16-297 0e+00

lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.


Pssm-ID: 468010  Cd Length: 297  Bit Score: 589.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  16 YAHSRGKEKQTLSRQLFDHSTFMAPINMFMTAFSSLPArQPFFETERFPELNTLTENWQVIREEAVRLQD--HIKAAQNN 93
Cdd:NF033391  14 YVHFRGRVRHKFSRQLSDHSTFMAPINCFMYLFSRVPN-TPYLPTEEFPELQPLQDNWEVIRDEALALQEagHIKAAEKY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  94 NDAGFNTFFKRGWKRFYLKWYADAHPSAQALCPVTTRLVSQIPCVKAAMFAELPAGAKLGKHRDPYAGSVRYHLGLSTPN 173
Cdd:NF033391  93 NDAGFNSFFKTGWKRFYLKWYDDAHPSAEALCPRTTALLRSIPSVKAAMFAELPPGSRLVRHRDPYAGSLRYHLGLATPN 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 174 DDRCFIEVDQQRHSWRDGEAVIFDETYVHWAENKTDRTRIILFCDIERPMKWRWAQAVNHWVGTTLMSAASSPNDDNDRT 253
Cdd:NF033391 173 DDRCFIEVDGQRYSWRDGEAVVFDETYIHYAENKTDQNRIILFCDIERPMKYRWAQAVNRWFGRNLMSAAASPNDEGDRT 252
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 695713877 254 GGINRIFKYVHAGRERGQRLKKRNRKAYYALKYLCISAIFAALL 297
Cdd:NF033391 253 GGINRLFKYVYAIRLKGKRLKKRNRTLYYLLKWALFGGIAALII 296
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
47-284 1.32e-119

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442776  Cd Length: 220  Bit Score: 342.24  E-value: 1.32e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  47 AFSSLPArQPFFETERFPELNTLTENWQVIREEAVRLQDHIKAAQNNNDAGF---NTFFKRGWKRFYLKWYADAHPSAQA 123
Cdd:COG3555    2 RFSGLPT-TPFFDRAQFPWLAELEANWPTIRAELLALLAEIEALPPYHDISFdqaNIFFDRGWKRFYLYWYGERHPSNCA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 124 LCPVTTRLVSQIPCVKAAMFAELPAGAKLGKHRDPYAGSVRYHLGLSTPNDDRCFIEVDQQRHSWRDGEAVIFDETYVHW 203
Cdd:COG3555   81 LCPKTAALLEQIPGVKAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPNDDRCRIRVDGETYSWREGEAVLFDDTYEHE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 204 AENKTDRTRIILFCDIERPMKWRWAQAVNHWVGTTLMSAASSPNddndrtgginrifkyvhagreRGQRLKKRNRKAYYA 283
Cdd:COG3555  161 AWNDTDETRVVLFCDVWRPMLSPWERAVNRLFAAILMRSAFVPN---------------------ARKNLKKWNKRLYYL 219

                 .
gi 695713877 284 L 284
Cdd:COG3555  220 L 220
Asp_Arg_Hydrox pfam05118
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
70-222 9.18e-62

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


Pssm-ID: 461552  Cd Length: 157  Bit Score: 192.86  E-value: 9.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877   70 TENWQVIREEAVRLQDHIKAAQNNNDAGFNTFFKRGWKRFYLKWYADAHPSAQALCPVTTRLVSQIPC------VKAAMF 143
Cdd:pfam05118   1 EANWQVIRDELLALLKQEEGLPPYEEEALDDFGDIGWKTFYLYAYGARLPENCALCPKTAALLEQPGVkasgcpRGQAMF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 695713877  144 AELPAGAKLGKHRDPYAGSVRYHLGLSTPNDdrCFIEVDQQRHSWRDGEAVIFDETYVHWAENKTDRTRIILFCDIERP 222
Cdd:pfam05118  81 SRLQPGTHIPPHRGPTNGRLRCHLGLVVPPG--CRIRVGGETRTWREGECLLFDDSFEHEAWNETDEPRVVLLVDVWRP 157
 
Name Accession Description Interval E-value
lipid_A_LpxO NF033391
lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the ...
16-297 0e+00

lipid A hydroxylase LpxO; Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.


Pssm-ID: 468010  Cd Length: 297  Bit Score: 589.99  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  16 YAHSRGKEKQTLSRQLFDHSTFMAPINMFMTAFSSLPArQPFFETERFPELNTLTENWQVIREEAVRLQD--HIKAAQNN 93
Cdd:NF033391  14 YVHFRGRVRHKFSRQLSDHSTFMAPINCFMYLFSRVPN-TPYLPTEEFPELQPLQDNWEVIRDEALALQEagHIKAAEKY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  94 NDAGFNTFFKRGWKRFYLKWYADAHPSAQALCPVTTRLVSQIPCVKAAMFAELPAGAKLGKHRDPYAGSVRYHLGLSTPN 173
Cdd:NF033391  93 NDAGFNSFFKTGWKRFYLKWYDDAHPSAEALCPRTTALLRSIPSVKAAMFAELPPGSRLVRHRDPYAGSLRYHLGLATPN 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 174 DDRCFIEVDQQRHSWRDGEAVIFDETYVHWAENKTDRTRIILFCDIERPMKWRWAQAVNHWVGTTLMSAASSPNDDNDRT 253
Cdd:NF033391 173 DDRCFIEVDGQRYSWRDGEAVVFDETYIHYAENKTDQNRIILFCDIERPMKYRWAQAVNRWFGRNLMSAAASPNDEGDRT 252
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 695713877 254 GGINRIFKYVHAGRERGQRLKKRNRKAYYALKYLCISAIFAALL 297
Cdd:NF033391 253 GGINRLFKYVYAIRLKGKRLKKRNRTLYYLLKWALFGGIAALII 296
LpxO2 COG3555
Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, ...
47-284 1.32e-119

Aspartyl/asparaginyl beta-hydroxylase, cupin superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442776  Cd Length: 220  Bit Score: 342.24  E-value: 1.32e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877  47 AFSSLPArQPFFETERFPELNTLTENWQVIREEAVRLQDHIKAAQNNNDAGF---NTFFKRGWKRFYLKWYADAHPSAQA 123
Cdd:COG3555    2 RFSGLPT-TPFFDRAQFPWLAELEANWPTIRAELLALLAEIEALPPYHDISFdqaNIFFDRGWKRFYLYWYGERHPSNCA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 124 LCPVTTRLVSQIPCVKAAMFAELPAGAKLGKHRDPYAGSVRYHLGLSTPNDDRCFIEVDQQRHSWRDGEAVIFDETYVHW 203
Cdd:COG3555   81 LCPKTAALLEQIPGVKAAMFSILPPGKHIPPHRGPYNGRLRYHLGLIVPNDDRCRIRVDGETYSWREGEAVLFDDTYEHE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877 204 AENKTDRTRIILFCDIERPMKWRWAQAVNHWVGTTLMSAASSPNddndrtgginrifkyvhagreRGQRLKKRNRKAYYA 283
Cdd:COG3555  161 AWNDTDETRVVLFCDVWRPMLSPWERAVNRLFAAILMRSAFVPN---------------------ARKNLKKWNKRLYYL 219

                 .
gi 695713877 284 L 284
Cdd:COG3555  220 L 220
Asp_Arg_Hydrox pfam05118
Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases ...
70-222 9.18e-62

Aspartyl/Asparaginyl beta-hydroxylase; Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.


Pssm-ID: 461552  Cd Length: 157  Bit Score: 192.86  E-value: 9.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695713877   70 TENWQVIREEAVRLQDHIKAAQNNNDAGFNTFFKRGWKRFYLKWYADAHPSAQALCPVTTRLVSQIPC------VKAAMF 143
Cdd:pfam05118   1 EANWQVIRDELLALLKQEEGLPPYEEEALDDFGDIGWKTFYLYAYGARLPENCALCPKTAALLEQPGVkasgcpRGQAMF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 695713877  144 AELPAGAKLGKHRDPYAGSVRYHLGLSTPNDdrCFIEVDQQRHSWRDGEAVIFDETYVHWAENKTDRTRIILFCDIERP 222
Cdd:pfam05118  81 SRLQPGTHIPPHRGPTNGRLRCHLGLVVPPG--CRIRVGGETRTWREGECLLFDDSFEHEAWNETDEPRVVLLVDVWRP 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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