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Conserved domains on  [gi|695333121|ref|WP_032530941|]
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MULTISPECIES: tetratricopeptide repeat protein [Bacteroides]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
435-717 9.37e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 9.37e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  435 FQLGTQAFANTQFEQSIGYFDRSLGLGQYNrqtkADALYWRGEAYYRLNRMEEAKRNFTDYLQLTQQTnnemyALAHYNL 514
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET----VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-----AEALLEL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  515 GYIAFHQKDYVQAQNWFRKYISLEKGEnktalADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNTPSGDYsFYQLALVSGL 594
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDD-----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-YCELAELYLE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  595 QKDYSGKITWLNRLAGKYPASpyaISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVsrkAAAEIGLLYYQNEDYNQ 674
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDC---ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP---ALPRLAELYEKLGDPEE 230
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 695333121  675 AIDAYKQVVQKYPGSDEARLamrdLKSIYVDMNRIDEFAALAS 717
Cdd:COG2956   231 ALELLRKALELDPSDDLLLA----LADLLERKEGLEAALALLE 269
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
217-938 1.55e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 88.22  E-value: 1.55e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   217 AEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKeNAPRRDALYMLGLSYFQTG 296
Cdd:TIGR02917   29 AKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRKALSL-GYPKNQVLPLLARAYLLQG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   297 VFSKAAETLGEVTTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNA-NPKIKEQAAYnYALcihetSYSAFGES 375
Cdd:TIGR02917  105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPrSLYAKLGLAQ-LAL-----AENRFDEA 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   376 VTVFEKFLNEFPTSEYAEMVssyLVEVYMNTRSYEAALKSIDRIA-----HPGKRILEAKqrILFQLGTQAFANTQFEQS 450
Cdd:TIGR02917  179 RALIDEVLTADPGNVDALLL---KGDLLLSLGNIELALAAYRKAIalrpnNIAVLLALAT--ILIEAGEFEEAEKHADAL 253
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   451 IGYFDRSLGlgqynrqtkadALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNW 530
Cdd:TIGR02917  254 LKKAPNSPL-----------AHYLKALVDFQKKNYEDARETLQDALKS-----APEYLPALLLAGASEYQLGNLEQAYQY 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   531 FRKYISlekgenktaladaynrigdcyldvrnfdeakhyysqaeamNTPSGDYSFYQLALVSGLQKDYSGKITWLNRLAG 610
Cdd:TIGR02917  318 LNQILK----------------------------------------YAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   611 KYPASPYAISALyekGRSYVLMDNNQQAItsfkELLAKYPE-SPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGS 689
Cdd:TIGR02917  358 LDPDDPAALSLL---GEAYLALGDFEKAA----EYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   690 DEARLAmrdLKSIYVDMNRIDefAALASA------MPGNirfdaseqdSLTYMAAEKIYM-RGRVEQAKESFGKYLQTFP 762
Cdd:TIGR02917  431 GRADLL---LILSYLRSGQFD--KALAAAkklekkQPDN---------ASLHNLLGAIYLgKGDLAKAREAFEKALSIEP 496
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   763 DGAFglnAHYYLCLIGKEQKNYDMILEHSGKLLEYpdNPFSEEALIMRAEVQFNKVQFADALASYKMLKEKATTAERRLL 842
Cdd:TIGR02917  497 DFFP---AAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   843 AetgmLRAAYLLKDDTETihaATALLSEAKLSPELKNEALYYRAKAYLNQKGDKAAMADLKELAKdtRNLYGAEAKFLVA 922
Cdd:TIGR02917  572 A----LAQYYLGKGQLKK---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPDSALALLLLA 642
                          730
                   ....*....|....*.
gi 695333121   923 QELYNTQNYAAAEKEL 938
Cdd:TIGR02917  643 DAYAVMKNYAKAITSL 658
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
86-305 2.04e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.68  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFE 165
Cdd:COG2956    61 AIRIHQKLLERDPDRAEA---LLELAQDYLKAGLLDRAEELLEKL---LELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  166 TLKASSPKYAnDCSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEH 245
Cdd:COG2956   135 RLLKLGPENA-HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  246 AAEMyriLGDAYYHFGDYHKAVTSFRNYLEKenAPRRDALYMLGLSYFQTGVFSKAAETL 305
Cdd:COG2956   214 ALPR---LAELYEKLGDPEEALELLRKALEL--DPSDDLLLALADLLERKEGLEAALALL 268
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
39-127 3.90e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.60  E-value: 3.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   39 KELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSAYELKD-RNAIAQLRSYLDTYPDTPHANRIYALIASAYFYQ 117
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDyDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
                          90
                  ....*....|
gi 695333121  118 GNYDEALALF 127
Cdd:COG1729    81 GDYDKARATL 90
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
435-717 9.37e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 9.37e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  435 FQLGTQAFANTQFEQSIGYFDRSLGLGQYNrqtkADALYWRGEAYYRLNRMEEAKRNFTDYLQLTQQTnnemyALAHYNL 514
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET----VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-----AEALLEL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  515 GYIAFHQKDYVQAQNWFRKYISLEKGEnktalADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNTPSGDYsFYQLALVSGL 594
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDD-----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-YCELAELYLE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  595 QKDYSGKITWLNRLAGKYPASpyaISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVsrkAAAEIGLLYYQNEDYNQ 674
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDC---ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP---ALPRLAELYEKLGDPEE 230
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 695333121  675 AIDAYKQVVQKYPGSDEARLamrdLKSIYVDMNRIDEFAALAS 717
Cdd:COG2956   231 ALELLRKALELDPSDDLLLA----LADLLERKEGLEAALALLE 269
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
217-938 1.55e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 88.22  E-value: 1.55e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   217 AEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKeNAPRRDALYMLGLSYFQTG 296
Cdd:TIGR02917   29 AKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRKALSL-GYPKNQVLPLLARAYLLQG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   297 VFSKAAETLGEVTTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNA-NPKIKEQAAYnYALcihetSYSAFGES 375
Cdd:TIGR02917  105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPrSLYAKLGLAQ-LAL-----AENRFDEA 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   376 VTVFEKFLNEFPTSEYAEMVssyLVEVYMNTRSYEAALKSIDRIA-----HPGKRILEAKqrILFQLGTQAFANTQFEQS 450
Cdd:TIGR02917  179 RALIDEVLTADPGNVDALLL---KGDLLLSLGNIELALAAYRKAIalrpnNIAVLLALAT--ILIEAGEFEEAEKHADAL 253
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   451 IGYFDRSLGlgqynrqtkadALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNW 530
Cdd:TIGR02917  254 LKKAPNSPL-----------AHYLKALVDFQKKNYEDARETLQDALKS-----APEYLPALLLAGASEYQLGNLEQAYQY 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   531 FRKYISlekgenktaladaynrigdcyldvrnfdeakhyysqaeamNTPSGDYSFYQLALVSGLQKDYSGKITWLNRLAG 610
Cdd:TIGR02917  318 LNQILK----------------------------------------YAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   611 KYPASPYAISALyekGRSYVLMDNNQQAItsfkELLAKYPE-SPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGS 689
Cdd:TIGR02917  358 LDPDDPAALSLL---GEAYLALGDFEKAA----EYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   690 DEARLAmrdLKSIYVDMNRIDefAALASA------MPGNirfdaseqdSLTYMAAEKIYM-RGRVEQAKESFGKYLQTFP 762
Cdd:TIGR02917  431 GRADLL---LILSYLRSGQFD--KALAAAkklekkQPDN---------ASLHNLLGAIYLgKGDLAKAREAFEKALSIEP 496
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   763 DGAFglnAHYYLCLIGKEQKNYDMILEHSGKLLEYpdNPFSEEALIMRAEVQFNKVQFADALASYKMLKEKATTAERRLL 842
Cdd:TIGR02917  497 DFFP---AAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   843 AetgmLRAAYLLKDDTETihaATALLSEAKLSPELKNEALYYRAKAYLNQKGDKAAMADLKELAKdtRNLYGAEAKFLVA 922
Cdd:TIGR02917  572 A----LAQYYLGKGQLKK---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPDSALALLLLA 642
                          730
                   ....*....|....*.
gi 695333121   923 QELYNTQNYAAAEKEL 938
Cdd:TIGR02917  643 DAYAVMKNYAKAITSL 658
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
111-357 2.56e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 83.24  E-value: 2.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  111 ASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFETLKASSPKYANDCsYYISYIRYTQK 190
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEA---LELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLKAG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  191 RYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEHAaemYRILGDAYYHFGDYHKAVTSF 270
Cdd:COG2956    91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA---YCELAELYLEQGDYDEAIEAL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  271 RNYLEKENAPRRdALYMLGLSYFQTGVFSKAAETLGEVTTENDALTQnAYLHMGLAYLHLAEKNKARMAFEQAAASNANP 350
Cdd:COG2956   168 EKALKLDPDCAR-ALLLLAELYLEQGDYEEAIAALERALEQDPDYLP-ALPRLAELYEKLGDPEEALELLRKALELDPSD 245

                  ....*..
gi 695333121  351 KIKEQAA 357
Cdd:COG2956   246 DLLLALA 252
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
586-699 4.64e-14

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 69.62  E-value: 4.64e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   586 YQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLL 665
Cdd:TIGR02795    4 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 83
                           90       100       110
                   ....*....|....*....|....*....|....
gi 695333121   666 YYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDL 699
Cdd:TIGR02795   84 LQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL 117
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
86-305 2.04e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.68  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFE 165
Cdd:COG2956    61 AIRIHQKLLERDPDRAEA---LLELAQDYLKAGLLDRAEELLEKL---LELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  166 TLKASSPKYAnDCSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEH 245
Cdd:COG2956   135 RLLKLGPENA-HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  246 AAEMyriLGDAYYHFGDYHKAVTSFRNYLEKenAPRRDALYMLGLSYFQTGVFSKAAETL 305
Cdd:COG2956   214 ALPR---LAELYEKLGDPEEALELLRKALEL--DPSDDLLLALADLLERKEGLEAALALL 268
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
39-127 3.90e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.60  E-value: 3.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   39 KELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSAYELKD-RNAIAQLRSYLDTYPDTPHANRIYALIASAYFYQ 117
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDyDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
                          90
                  ....*....|
gi 695333121  118 GNYDEALALF 127
Cdd:COG1729    81 GDYDKARATL 90
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
620-770 2.25e-06

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 49.56  E-value: 2.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  620 SALYEKGRSyvLMDNNQ--QAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLA-- 695
Cdd:cd15830     4 QELYEKAQT--ALQKGNydGAIKYLEALDSRYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRHPNIDYVyy 81
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695333121  696 MRDLKSIYVDMNRIDEFAalasampgniRFDASEQDSltymaaekiymrGRVEQAKESFGKYLQTFPDGAFGLNA 770
Cdd:cd15830    82 MRGLSNYKLDRSFLQRFF----------PIDRSDRDQ------------SYAREAFQDFKDLIQRYPNSEYATDA 134
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
595-702 5.04e-06

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 49.03  E-value: 5.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  595 QKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQ 674
Cdd:PRK10803  156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235
                          90       100
                  ....*....|....*....|....*...
gi 695333121  675 AIDAYKQVVQKYPGSDEARLAMRDLKSI 702
Cdd:PRK10803  236 AKAVYQQVIKKYPGTDGAKQAQKRLNAM 263
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
5-271 1.55e-05

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 47.55  E-value: 1.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121     5 ISRLICAVACCVPVALQAQTSEKITSPVN------LYKEGKELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSA 78
Cdd:TIGR03302    1 LLLLILLLALLLLLAGCSSKKKKEADPVEewpaeeLYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAY 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121    79 YELKD-RNAIAQLRSYLDTYPDTPHANRIYALIASAYFyqgnydealALFNSSRLDLlgneerddmtyqlatcylkvGNV 157
Cdd:TIGR03302   81 YKSGDyAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY---------NQIDRVDRDQ--------------------TAA 131
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   158 KEAAIWFETLKASSP--KYANDCSYYISYIRytqkrydEALkgflplqddAKYKalvpYYIAEIYAIKKNYDKAQIVAQN 235
Cdd:TIGR03302  132 REAFEAFQELIRRYPnsEYAPDAKKRMDYLR-------NRL---------AGKE----LYVARFYLKRGAYVAAINRFQT 191
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 695333121   236 YLSAYPQNEHAAEMYRILGDAYYHFGDYHKAVTSFR 271
Cdd:TIGR03302  192 VVENYPDTPATEEALARLVEAYLKLGLTDLAQDAAA 227
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
620-692 1.81e-04

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 43.85  E-value: 1.81e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695333121   620 SALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEA 692
Cdd:pfam13525    5 SELYEAGQTALQKGDYGDAIKKLEALDNRYPFSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTHPNI 77
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
111-175 9.27e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 9.27e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695333121   111 ASAYFYQGNYDEALALFNSSRLDLLGNEERDDMTYQLATCYLKVGNVKEAAIWFETLKASSPKYA 175
Cdd:pfam13432    4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
435-717 9.37e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 9.37e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  435 FQLGTQAFANTQFEQSIGYFDRSLGLGQYNrqtkADALYWRGEAYYRLNRMEEAKRNFTDYLQLTQQTnnemyALAHYNL 514
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET----VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-----AEALLEL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  515 GYIAFHQKDYVQAQNWFRKYISLEKGEnktalADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNTPSGDYsFYQLALVSGL 594
Cdd:COG2956    83 AQDYLKAGLLDRAEELLEKLLELDPDD-----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-YCELAELYLE 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  595 QKDYSGKITWLNRLAGKYPASpyaISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVsrkAAAEIGLLYYQNEDYNQ 674
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDC---ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP---ALPRLAELYEKLGDPEE 230
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 695333121  675 AIDAYKQVVQKYPGSDEARLamrdLKSIYVDMNRIDEFAALAS 717
Cdd:COG2956   231 ALELLRKALELDPSDDLLLA----LADLLERKEGLEAALALLE 269
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
217-938 1.55e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 88.22  E-value: 1.55e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   217 AEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKeNAPRRDALYMLGLSYFQTG 296
Cdd:TIGR02917   29 AKSYLQKNKYKAAIIQLKNALQKDPND---AEARFLLGKIYLALGDYAAAEKELRKALSL-GYPKNQVLPLLARAYLLQG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   297 VFSKAAETLGEVTTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNA-NPKIKEQAAYnYALcihetSYSAFGES 375
Cdd:TIGR02917  105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPrSLYAKLGLAQ-LAL-----AENRFDEA 178
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   376 VTVFEKFLNEFPTSEYAEMVssyLVEVYMNTRSYEAALKSIDRIA-----HPGKRILEAKqrILFQLGTQAFANTQFEQS 450
Cdd:TIGR02917  179 RALIDEVLTADPGNVDALLL---KGDLLLSLGNIELALAAYRKAIalrpnNIAVLLALAT--ILIEAGEFEEAEKHADAL 253
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   451 IGYFDRSLGlgqynrqtkadALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNW 530
Cdd:TIGR02917  254 LKKAPNSPL-----------AHYLKALVDFQKKNYEDARETLQDALKS-----APEYLPALLLAGASEYQLGNLEQAYQY 317
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   531 FRKYISlekgenktaladaynrigdcyldvrnfdeakhyysqaeamNTPSGDYSFYQLALVSGLQKDYSGKITWLNRLAG 610
Cdd:TIGR02917  318 LNQILK----------------------------------------YAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   611 KYPASPYAISALyekGRSYVLMDNNQQAItsfkELLAKYPE-SPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGS 689
Cdd:TIGR02917  358 LDPDDPAALSLL---GEAYLALGDFEKAA----EYLAKATElDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   690 DEARLAmrdLKSIYVDMNRIDefAALASA------MPGNirfdaseqdSLTYMAAEKIYM-RGRVEQAKESFGKYLQTFP 762
Cdd:TIGR02917  431 GRADLL---LILSYLRSGQFD--KALAAAkklekkQPDN---------ASLHNLLGAIYLgKGDLAKAREAFEKALSIEP 496
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   763 DGAFglnAHYYLCLIGKEQKNYDMILEHSGKLLEYpdNPFSEEALIMRAEVQFNKVQFADALASYKMLKEKATTAERRLL 842
Cdd:TIGR02917  497 DFFP---AAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   843 AetgmLRAAYLLKDDTETihaATALLSEAKLSPELKNEALYYRAKAYLNQKGDKAAMADLKELAKdtRNLYGAEAKFLVA 922
Cdd:TIGR02917  572 A----LAQYYLGKGQLKK---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPDSALALLLLA 642
                          730
                   ....*....|....*.
gi 695333121   923 QELYNTQNYAAAEKEL 938
Cdd:TIGR02917  643 DAYAVMKNYAKAITSL 658
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
111-357 2.56e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 83.24  E-value: 2.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  111 ASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFETLKASSPKYANDCsYYISYIRYTQK 190
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEA---LELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEAL-LELAQDYLKAG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  191 RYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEHAaemYRILGDAYYHFGDYHKAVTSF 270
Cdd:COG2956    91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA---YCELAELYLEQGDYDEAIEAL 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  271 RNYLEKENAPRRdALYMLGLSYFQTGVFSKAAETLGEVTTENDALTQnAYLHMGLAYLHLAEKNKARMAFEQAAASNANP 350
Cdd:COG2956   168 EKALKLDPDCAR-ALLLLAELYLEQGDYEEAIAALERALEQDPDYLP-ALPRLAELYEKLGDPEEALELLRKALELDPSD 245

                  ....*..
gi 695333121  351 KIKEQAA 357
Cdd:COG2956   246 DLLLALA 252
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
595-702 4.07e-17

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 78.11  E-value: 4.07e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  595 QKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQ 674
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDK 85
                          90       100
                  ....*....|....*....|....*...
gi 695333121  675 AIDAYKQVVQKYPGSDEARLAMRDLKSI 702
Cdd:COG1729    86 ARATLEELIKKYPDSEAAKEARARLARL 113
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
4-834 7.53e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 85.91  E-value: 7.53e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121     4 KISRLICAVaccvpVALQAQTSEkitSPVNLYKEGKELFLQKNYAAAMPPLRTFVRQKADvnlKEEAEYMLVCSAYELKD 83
Cdd:TIGR02917    3 KITALLCIA-----LALSACGDQ---SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPN---DAEARFLLGKIYLALGD 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121    84 -RNAIAQLRSYLDTYPDtphANRIYALIASAYFYQGNYDEALALFnsSRLDLLGNEERDDMTYQLATCYLKVGNVKEAAI 162
Cdd:TIGR02917   72 yAAAEKELRKALSLGYP---KNQVLPLLARAYLLQGKFQQVLDEL--PGKTLLDDEGAAELLALRGLAYLGLGQLELAQK 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   163 WFETLKASSPKYAnDCSYYISYIRYTQKRYDEALKgflplqddakykalvpyYIAEIyaikknydkaqivaqnyLSAYPQ 242
Cdd:TIGR02917  147 SYEQALAIDPRSL-YAKLGLAQLALAENRFDEARA-----------------LIDEV-----------------LTADPG 191
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   243 NehaAEMYRILGDAYYHFGDYHKAVTSFRNYLE-KENAPRrdALYMLGLSYFQTGVFSKAAETLgevttenDALTQNAYL 321
Cdd:TIGR02917  192 N---VDALLLKGDLLLSLGNIELALAAYRKAIAlRPNNIA--VLLALATILIEAGEFEEAEKHA-------DALLKKAPN 259
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   322 HMGLAYL----HLAEKN--KARMAFEQAAASNAN--PKIKEQAAYNYALCIHETSYSafgesvtVFEKFLNEFPTSEYAE 393
Cdd:TIGR02917  260 SPLAHYLkalvDFQKKNyeDARETLQDALKSAPEylPALLLAGASEYQLGNLEQAYQ-------YLNQILKYAPNSHQAR 332
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   394 --MVSSYLVEvymntrsyeaalKSIDRIAHPGKRILEAKQR---ILFQLGTQAFANTQFEQSIGYFDRSLGLGQYNrqtk 468
Cdd:TIGR02917  333 rlLASIQLRL------------GRVDEAIATLSPALGLDPDdpaALSLLGEAYLALGDFEKAAEYLAKATELDPEN---- 396
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   469 ADALYWRGEAYYRLNRMEEAKRNFTDYLQL--------------------------------TQQTNNemyALAHYNLGY 516
Cdd:TIGR02917  397 AAARTQLGISKLSQGDPSEAIADLETAAQLdpelgradlllilsylrsgqfdkalaaakkleKKQPDN---ASLHNLLGA 473
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   517 IAFHQKDYVQAQNWFRKYISLEKG--------------ENKTALA---------------DAYNRIGDCYLDVRNFDEAK 567
Cdd:TIGR02917  474 IYLGKGDLAKAREAFEKALSIEPDffpaaanlaridiqEGNPDDAiqrfekvltidpknlRAILALAGLYLRTGNEEEAV 553
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   568 HYYSQAEAMNTpsGDYSFYqLALVSGL--QKDYSGKITWLNRLAGKYPASPYAISALyekGRSYVLMDNNQQAITSFKEL 645
Cdd:TIGR02917  554 AWLEKAAELNP--QEIEPA-LALAQYYlgKGQLKKALAILNEAADAAPDSPEAWLML---GRAQLAAGDLNKAVSSFKKL 627
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   646 LAKYPESPVSRKAAAEIgllYYQNEDYNQAIDAYKQVVQKYPGSDEARLAmrdLKSIYVDMNRIDEFAALASAMPGNIRF 725
Cdd:TIGR02917  628 LALQPDSALALLLLADA---YAVMKNYAKAITSLKRALELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPK 701
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   726 DASEQDSLTymaaeKIYMR-GRVEQAKESFGKYLQTFPDGAFGLNAHYYLCLIGKEQKNYDMiLEHSgkLLEYPDNPFSE 804
Cdd:TIGR02917  702 AALGFELEG-----DLYLRqKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT-LEAW--LKTHPNDAVLR 773
                          890       900       910
                   ....*....|....*....|....*....|
gi 695333121   805 EALIMRAEVQFnkvQFADALASYKMLKEKA 834
Cdd:TIGR02917  774 TALAELYLAQK---DYDKAIKHYQTVVKKA 800
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
586-699 4.64e-14

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 69.62  E-value: 4.64e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   586 YQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLL 665
Cdd:TIGR02795    4 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 83
                           90       100       110
                   ....*....|....*....|....*....|....
gi 695333121   666 YYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDL 699
Cdd:TIGR02795   84 LQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL 117
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
86-305 2.04e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.68  E-value: 2.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFE 165
Cdd:COG2956    61 AIRIHQKLLERDPDRAEA---LLELAQDYLKAGLLDRAEELLEKL---LELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  166 TLKASSPKYAnDCSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEH 245
Cdd:COG2956   135 RLLKLGPENA-HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  246 AAEMyriLGDAYYHFGDYHKAVTSFRNYLEKenAPRRDALYMLGLSYFQTGVFSKAAETL 305
Cdd:COG2956   214 ALPR---LAELYEKLGDPEEALELLRKALEL--DPSDDLLLALADLLERKEGLEAALALL 268
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
473-790 7.55e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 7.55e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  473 YWRGEAYYRLNRMEEAKRNFTDYLQLTQQTnnemyALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGEnktalADAYNR 552
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET-----VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-----AEALLE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  553 IGDCYLDVRNFDEAKHYYSQAEAMNtpsgdysfyqlalvsglqkdysgkitwlnrlagkypasPYAISALYEKGRSYVLM 632
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELD--------------------------------------PDDAEALRLLAEIYEQE 123
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  633 DNNQQAITSFKELLAKYPESPVsrkAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDlksIYVDMNRIDEF 712
Cdd:COG2956   124 GDWEKAIEVLERLLKLGPENAH---AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE---LYLEQGDYEEA 197
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 695333121  713 AALASAMpgnirFDASEQDSLTYMAAEKIYMR-GRVEQAKESFGKYLQTFPDGAFGLNAHYYLCLIGKEQKNYDMILEH 790
Cdd:COG2956   198 IAALERA-----LEQDPDYLPALPRLAELYEKlGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
469-718 1.60e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.49  E-value: 1.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  469 ADALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGenktaLAD 548
Cdd:COG0457     8 AEAYNNLGLAYRRLGRYEEAIEDYEKALEL-----DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD-----DAE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  549 AYNRIGDCYLDVRNFDEAKHYYSQAEAMNtPSGDYSFYQLALVSGLQKDYSGKITWLNRLagkYPASPYAISALYEKGRS 628
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALELD-PDDAEALYNLGLALLELGRYDEAIEAYERA---LELDPDDADALYNLGIA 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  629 YVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDLKSIYVDMNR 708
Cdd:COG0457   154 LEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
                         250
                  ....*....|
gi 695333121  709 IDEFAALASA 718
Cdd:COG0457   234 RLAALALYQY 243
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
3-276 2.07e-12

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 68.37  E-value: 2.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121    3 KKISRLICAVACCVPVALQAQTSE--KITSPVNLYKEGKELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSAYE 80
Cdd:COG4105     2 KKLLKLLLLLLLALLLAGCSSFKKalKSWDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPGSPYAEQAQLMLAYAYYK 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   81 LKDR-NAIAQLRSYLDTYPDTPHANRIYALIASAYFYQGNydealalfnssrldllgNEERDdmtyqlatcylkVGNVKE 159
Cdd:COG4105    82 QGDYeEAIAAADRFIKLYPNSPNADYAYYLRGLSYYEQSP-----------------DSDRD------------QTSTRK 132
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  160 AAIWFETLKASSP--KYANDCSYYISYIRYTQKRYDealkgflplqddakykalvpYYIAEIYAIKKNYDKAQIVAQNYL 237
Cdd:COG4105   133 AIEAFQELINRYPdsEYAEDAKKRIDELRDKLARKE--------------------LEVARYYLKRGAYVAAINRFQNVL 192
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 695333121  238 SAYPQNEHAAEMYRILGDAYYHFGDYHKAVTSFRNYLEK 276
Cdd:COG4105   193 EDYPDTPAVEEALYLLVEAYYALGRYDEAQDAAAVLGKN 231
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
433-686 3.42e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.22  E-value: 3.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  433 ILFQLGTQAFANTQFEQSIGYFDRSLGLGQYNrqtkADALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHY 512
Cdd:COG2956    44 AHLALGNLYRRRGEYDRAIRIHQKLLERDPDR----AEALLELAQDYLKAGLLDRAEELLEKLLEL-----DPDDAEALR 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  513 NLGYIAFHQKDYVQAQNWFRKYISLEKGEnktalADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNtPSGDYSFYQLALVS 592
Cdd:COG2956   115 LLAEIYEQEGDWEKAIEVLERLLKLGPEN-----AHAYCELAELYLEQGDYDEAIEALEKALKLD-PDCARALLLLAELY 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  593 GLQKDYSGKITWLNRLAGKYPASpyaISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVsrkaAAEIGLLYYQNEDY 672
Cdd:COG2956   189 LEQGDYEEAIAALERALEQDPDY---LPALPRLAELYEKLGDPEEALELLRKALELDPSDDL----LLALADLLERKEGL 261
                         250
                  ....*....|....
gi 695333121  673 NQAIDAYKQVVQKY 686
Cdd:COG2956   262 EAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
663-939 5.60e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 5.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  663 GLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAmrdLKSIYVDMNRIDE-FAALASAMpgnirfDASEQDSLTYMAAEKI 741
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLA---LGNLYRRRGEYDRaIRIHQKLL------ERDPDRAEALLELAQD 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  742 YMR-GRVEQAKESFGKYLQTFPDGAfglNAHYYLCLIGKEQKNYDMILEHSGKLLEYpdNPFSEEALIMRAEVQFNKVQF 820
Cdd:COG2956    86 YLKaGLLDRAEELLEKLLELDPDDA---EALRLLAEIYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAELYLEQGDY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  821 ADALASYkmlkEKATTAERRLLAETGMLRAAYLLKDDTETihAATALLSEAKLSPELKnEALYYRAKAYLNQKGDKAAMA 900
Cdd:COG2956   161 DEAIEAL----EKALKLDPDCARALLLLAELYLEQGDYEE--AIAALERALEQDPDYL-PALPRLAELYEKLGDPEEALE 233
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 695333121  901 DLKELAKDTRNLygaEAKFLVAQELYNTQNYAAAEKELL 939
Cdd:COG2956   234 LLRKALELDPSD---DLLLALADLLERKEGLEAALALLE 269
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
507-757 7.49e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 7.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  507 YALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGEnktalADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNtPSGDYSFY 586
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-----AEALYNLGLAYLRLGRYEEALADYEQALELD-PDDAEALN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  587 QLALVSGLQKDYSGKITWLNRLAGKYPASPYaisALYEKGRSYVLMDNNQQAITSFKELLAKYPESPvsrKAAAEIGLLY 666
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAE---ALYNLGLALLELGRYDEAIEAYERALELDPDDA---DALYNLGIAL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  667 YQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDLKSIYVDMNRIDEFAALASAMPGNIRFDASEQDSLTYMAAEKIYMRGR 746
Cdd:COG0457   155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
                         250
                  ....*....|.
gi 695333121  747 VEQAKESFGKY 757
Cdd:COG0457   235 LAALALYQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
214-497 1.11e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 1.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  214 YYIAEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKeNAPRRDALYMLGLSYF 293
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPET---VEAHLALGNLYRRRGEYDRAIRIHQKLLER-DPDRAEALLELAQDYL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  294 QTGVFSKAAETLGEVTtENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNANpkiKEQAAYNYALCIHETSYsaFG 373
Cdd:COG2956    88 KAGLLDRAEELLEKLL-ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE---NAHAYCELAELYLEQGD--YD 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  374 ESVTVFEKFLNEFPTSEYAEMVssyLVEVYMNTRSYEAALKSIDRIAhpgkRILEAKQRILFQLGTQAFANTQFEQSIGY 453
Cdd:COG2956   162 EAIEALEKALKLDPDCARALLL---LAELYLEQGDYEEAIAALERAL----EQDPDYLPALPRLAELYEKLGDPEEALEL 234
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 695333121  454 FDRSLglgqyNRQTKADALYWRGEAYYRLNRMEEAKRNFTDYLQ 497
Cdd:COG2956   235 LRKAL-----ELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
223-308 5.18e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 57.69  E-value: 5.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  223 KKNYDKAQIVAQNYLSAYPQNEHAAEMYRILGDAYYHFGDYHKAVTSFRNYLEK--ENAPRRDALYMLGLSYFQTGVFSK 300
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypDSPKAPDALLKLGLSYLELGDYDK 85

                  ....*...
gi 695333121  301 AAETLGEV 308
Cdd:COG1729    86 ARATLEEL 93
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
627-711 1.48e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 56.54  E-value: 1.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  627 RSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDLKSIYVDM 706
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80

                  ....*
gi 695333121  707 NRIDE 711
Cdd:COG1729    81 GDYDK 85
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
555-665 1.63e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 56.15  E-value: 1.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  555 DCYLDVRNFDEAKHYYSQAEAM--NTPSGDYSFYQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLM 632
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
                          90       100       110
                  ....*....|....*....|....*....|...
gi 695333121  633 DNNQQAITSFKELLAKYPESPVSRKAAAEIGLL 665
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAAKEARARLARL 113
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
108-687 5.28e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.48  E-value: 5.28e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   108 ALIASAYFYQGNYDEALALFNSSRLDLLGNEErddMTYQLATCYLKVGNVKEAAIWFETLKASSPKYANdCSYYISYIRY 187
Cdd:TIGR02917  197 LLKGDLLLSLGNIELALAAYRKAIALRPNNIA---VLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDF 272
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   188 TQKRYDEALKGFL------PLQDDAKYKALVPYY----------------------------IAEIYAIKKNYDKAQIVA 233
Cdd:TIGR02917  273 QKKNYEDARETLQdalksaPEYLPALLLAGASEYqlgnleqayqylnqilkyapnshqarrlLASIQLRLGRVDEAIATL 352
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   234 QNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVtsfrNYLEK--ENAPRRDALYM-LGLSYFQTGVFSKAAETLGEVTT 310
Cdd:TIGR02917  353 SPALGLDPDD---PAALSLLGEAYLALGDFEKAA----EYLAKatELDPENAAARTqLGISKLSQGDPSEAIADLETAAQ 425
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   311 ENDALTqNAYLHMGLAYLHLAEKNKARMAFEQ----------------AAASNANPKIKEQAAYNYALCIHETSYSAFGE 374
Cdd:TIGR02917  426 LDPELG-RADLLLILSYLRSGQFDKALAAAKKlekkqpdnaslhnllgAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   375 -------------SVTVFEKFLNEFPTSEYAEMVssyLVEVYMNTRSYEAALKSIDRIAHPGKRILEAKqrilFQLGTQA 441
Cdd:TIGR02917  505 laridiqegnpddAIQRFEKVLTIDPKNLRAILA---LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA----LALAQYY 577
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   442 FANTQFEQSIGYFDRSLGlgqyNRQTKADALYWRGEAYYRLNRMEEAKRNFTDYLQLTQQTnnemyALAHYNLGYIAFHQ 521
Cdd:TIGR02917  578 LGKGQLKKALAILNEAAD----AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS-----ALALLLLADAYAVM 648
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   522 KDYVQAQNWFRKYISLEKGenktaLADAYNRIGDCYLDVRNFDEAKHYYSQAEAmNTPSGDYSFYQLALVSGLQKDYSGK 601
Cdd:TIGR02917  649 KNYAKAITSLKRALELKPD-----NTEAQIGLAQLLLAAKRTESAKKIAKSLQK-QHPKAALGFELEGDLYLRQKDYPAA 722
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   602 ITWLNRLAGKYPASPYAIsalyEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEiglLYYQNEDYNQAIDAYKQ 681
Cdd:TIGR02917  723 IQAYRKALKRAPSSQNAI----KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAE---LYLAQKDYDKAIKHYQT 795

                   ....*.
gi 695333121   682 VVQKYP 687
Cdd:TIGR02917  796 VVKKAP 801
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
30-715 5.51e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.10  E-value: 5.51e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121    30 SPVNLYKEGKELFLQKNYAAAMPPLRTFVRQKADvnlKEEAEYMLVCSAYELKD-RNAIAQLRSYLDTYPDTPHANRIYA 108
Cdd:TIGR02917  260 SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE---YLPALLLAGASEYQLGNlEQAYQYLNQILKYAPNSHQARRLLA 336
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   109 LIasaYFYQGNYDEALALFNssrlDLLGNEERDDMTYQLA-TCYLKVGNVKEAAIWFETLKASSPKYAN-DCSYYISYIR 186
Cdd:TIGR02917  337 SI---QLRLGRVDEAIATLS----PALGLDPDDPAALSLLgEAYLALGDFEKAAEYLAKATELDPENAAaRTQLGISKLS 409
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   187 YTQKRYDEA-LKGFLPLQDDAKYKALVpyyIAEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHK 265
Cdd:TIGR02917  410 QGDPSEAIAdLETAAQLDPELGRADLL---LILSYLRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAK 483
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   266 AVTSFRNYL--EKENAPRRDALYMLGLsyfQTGVFSKAAETLGEVTTENdalTQNAYLHMGLAYLHLAEKNKARMAFEQA 343
Cdd:TIGR02917  484 AREAFEKALsiEPDFFPAAANLARIDI---QEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLE 557
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   344 AASNANPKIKEQAAynyALCIHETSYSAFGESVTVFEKFLNEFPTS-EYAEMVSSylveVYMNTRSYEAALKSIDRIAhp 422
Cdd:TIGR02917  558 KAAELNPQEIEPAL---ALAQYYLGKGQLKKALAILNEAADAAPDSpEAWLMLGR----AQLAAGDLNKAVSSFKKLL-- 628
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   423 gkRILEAKQRILFQLGTQAFANTQFEQSIGYFDRSLGLGQYNRqtkaDALYWRGEAYYRLNRMEEAKRNFTDYlqltqQT 502
Cdd:TIGR02917  629 --ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT----EAQIGLAQLLLAAKRTESAKKIAKSL-----QK 697
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   503 NNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKG-ENKTALADAYNRIGDcyldvrnfdeakhyysQAEAMNT--- 578
Cdd:TIGR02917  698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsQNAIKLHRALLASGN----------------TAEAVKTlea 761
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   579 -----PSGDYSFYQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISALyekgrSYVLMDN-NQQAITSFKELLAKYPES 652
Cdd:TIGR02917  762 wlkthPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNL-----AWLYLELkDPRALEYAERALKLAPNI 836
                          650       660       670       680       690       700
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695333121   653 PVSrkaAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLamrDLKSIYVDMNRIDEFAAL 715
Cdd:TIGR02917  837 PAI---LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY---HLALALLATGRKAEARKE 893
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
469-708 7.60e-09

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 57.58  E-value: 7.60e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  469 ADALYWRGEAYYRLNRMEEAKRNFTDYLqlTQQTNNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISL-EKGENktaLA 547
Cdd:COG4105    32 AEELYEEAKEALEKGDYEKAIKLFEELE--PRYPGSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLyPNSPN---AD 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  548 DAYNRIGDCYLdvrnfdeakhyysqaEAMNTPSGDYSFYQLALVSglqkdysgkitwLNRLAGKYPASPYAISAL----- 622
Cdd:COG4105   107 YAYYLRGLSYY---------------EQSPDSDRDQTSTRKAIEA------------FQELINRYPDSEYAEDAKkride 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  623 ---------YEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEAR 693
Cdd:COG4105   160 lrdklarkeLEVARYYLKRGAYVAAINRFQNVLEDYPDTPAVEEALYLLVEAYYALGRYDEAQDAAAVLGKNYPDSPYLK 239
                         250
                  ....*....|....*
gi 695333121  694 LAMRDLKSIYVDMNR 708
Cdd:COG4105   240 DAEKLLKKIGKELKK 254
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
620-711 1.43e-08

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 53.82  E-value: 1.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   620 SALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDL 699
Cdd:TIGR02795    1 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL 80
                           90
                   ....*....|..
gi 695333121   700 KSIYVDMNRIDE 711
Cdd:TIGR02795   81 GMSLQELGDKEK 92
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
621-833 1.49e-08

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 56.81  E-value: 1.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  621 ALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMrdLK 700
Cdd:COG4105    34 ELYEEAKEALEKGDYEKAIKLFEELEPRYPGSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNADYAY--YL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  701 SIYVDMNRIDEfaalasampgnirfdaSEQDSltymaaekiymrGRVEQAKESFGKYLQTFPDGAFGLNAHYYL------ 774
Cdd:COG4105   112 RGLSYYEQSPD----------------SDRDQ------------TSTRKAIEAFQELINRYPDSEYAEDAKKRIdelrdk 163
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 695333121  775 -----CLIGK---EQKNY-------DMILEHsgklleYPDNPFSEEALIMRAEVQFNKVQFADALASYKMLKEK 833
Cdd:COG4105   164 larkeLEVARyylKRGAYvaainrfQNVLED------YPDTPAVEEALYLLVEAYYALGRYDEAQDAAAVLGKN 231
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
434-575 1.73e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 1.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  434 LFQLGTQAFANTQFEQSIGYFDRSLGLGQYNrqtkADALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYN 513
Cdd:COG0457    45 LYNLGLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLALQALGRYEEALEDYDKALEL-----DPDDAEALYN 115
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 695333121  514 LGYIAFHQKDYVQAQNWFRKYISLEKGenktaLADAYNRIGDCYLDVRNFDEAKHYYSQAEA 575
Cdd:COG0457   116 LGLALLELGRYDEAIEAYERALELDPD-----DADALYNLGIALEKLGRYEEALELLEKLEA 172
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
419-622 1.83e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 1.83e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  419 IAHPGKRILEAKQRILFQLGTQAFANTQFEQSIGYFDRSLGLGQYNRQTKADALYWRGEAYYRLNRMEEAKRNFTDYLQL 498
Cdd:COG3914    28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  499 tqqtnNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISLekgenKTALADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNt 578
Cdd:COG3914   108 -----NPDNAEALFNLGNLLLALGRLEEALAALRRALAL-----NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD- 176
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 695333121  579 PSGDYSFYQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISAL 622
Cdd:COG3914   177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
209-349 2.06e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 2.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  209 KALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEHAaemYRILGDAYYHFGDYHKAVTSFRNYLEKENApRRDALYML 288
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA---FALLGEILLQLGDLDEAIVLLHEALELDPD-EPEARLNL 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695333121  289 GLSYFQTGVFSKAAETLgEVTTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNAN 349
Cdd:COG4783    79 GLALLKAGDYDEALALL-EKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
468-615 4.77e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 4.77e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  468 KADALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGEnktalA 547
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALEL-----DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-----P 72
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695333121  548 DAYNRIGDCYLDVRNFDEAKHYYSQAEAMNtPSGDYSFYQLALVSGLQKDYSGKITWLNRLAGKYPAS 615
Cdd:COG4783    73 EARLNLGLALLKAGDYDEALALLEKALKLD-PEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
557-783 5.29e-08

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 55.27  E-value: 5.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  557 YLDVRNFDEAKHYYSQAEAmNTPSGDY---SFYQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLMD 633
Cdd:COG4105    42 ALEKGDYEKAIKLFEELEP-RYPGSPYaeqAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNADYAYYLRGLSYYEQS 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  634 --------NNQQAITSFKELLAKYPESPVSRKAAA--------------EIGLLYYQNEDYNQAIDAYKQVVQKYPGSDE 691
Cdd:COG4105   121 pdsdrdqtSTRKAIEAFQELINRYPDSEYAEDAKKridelrdklarkelEVARYYLKRGAYVAAINRFQNVLEDYPDTPA 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  692 ARLAMRDLKSIYVDMnridefaalasampgnirfdaseqdsltymaaekiymrGRVEQAKESFGKYLQTFPDGAFGLNAH 771
Cdd:COG4105   201 VEEALYLLVEAYYAL--------------------------------------GRYDEAQDAAAVLGKNYPDSPYLKDAE 242
                         250
                  ....*....|..
gi 695333121  772 YYLCLIGKEQKN 783
Cdd:COG4105   243 KLLKKIGKELKK 254
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
546-785 7.92e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 7.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  546 LADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNtPSGDYSFYQLALVSGLQKDYSGKITWLNRLAGKYPASPyaiSALYEK 625
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD-PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA---EALNNL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  626 GRSYVLMDNNQQAITSFKELLAKYPESPvsrKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDLKSIYVD 705
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDPDDA---EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  706 MNR-IDEFAALASAMPGNIRFDASEQDSLTYMAAEKIYMRGRVEQAKESFGKYLQTFPDGAFGLNAHYYLCLIGKEQKNY 784
Cdd:COG0457   160 YEEaLELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239

                  .
gi 695333121  785 D 785
Cdd:COG0457   240 L 240
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
77-173 8.09e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.53  E-value: 8.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   77 SAYELKD-RNAIAQLRSYLDTYPDTPHANRIYALIASAYFYQGNYDEALALFNSSRLDLLGNEERDDMTYQLATCYLKVG 155
Cdd:COG1729     2 ALLKAGDyDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELG 81
                          90
                  ....*....|....*...
gi 695333121  156 NVKEAAIWFETLKASSPK 173
Cdd:COG1729    82 DYDKARATLEELIKKYPD 99
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
612-711 9.67e-08

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 54.10  E-value: 9.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   612 YPASPYAISALYEKGRSYV-LMD-------NNQQAITSFKELLAKYPESPVSRKAAA--------------EIGLLYYQN 669
Cdd:TIGR03302  100 HPNHPDADYAYYLRGLSNYnQIDrvdrdqtAAREAFEAFQELIRRYPNSEYAPDAKKrmdylrnrlagkelYVARFYLKR 179
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 695333121   670 EDYNQAIDAYKQVVQKYPGSDEARLAMRDLKSIYVDMNRIDE 711
Cdd:TIGR03302  180 GAYVAAINRFQTVVENYPDTPATEEALARLVEAYLKLGLTDL 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
105-348 2.45e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 2.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  105 RIYALIASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFETLKASSPKYAnDCSYYISY 184
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKA---LELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDA-EALNNLGL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  185 IRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYH 264
Cdd:COG0457    85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD---ADALYNLGIALEKLGRYE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  265 KAVTSFRNYLEKENAPRRDALYMLGLSYFQTGVFSKAAETLGEVTTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAA 344
Cdd:COG0457   162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241

                  ....
gi 695333121  345 ASNA 348
Cdd:COG0457   242 QYRA 245
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
255-356 3.57e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.60  E-value: 3.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  255 DAYYHFGDYHKAVTSFRNYLEK--ENAPRRDALYMLGLSYFQTGVFSKAAETLGEVTTE--NDALTQNAYLHMGLAYLHL 330
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypDSPKAPDALLKLGLSYLEL 80
                          90       100
                  ....*....|....*....|....*.
gi 695333121  331 AEKNKARMAFEQAAASNANPKIKEQA 356
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAAKEA 106
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
39-127 3.90e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.60  E-value: 3.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   39 KELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSAYELKD-RNAIAQLRSYLDTYPDTPHANRIYALIASAYFYQ 117
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDyDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
                          90
                  ....*....|
gi 695333121  118 GNYDEALALF 127
Cdd:COG1729    81 GDYDKARATL 90
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
478-572 4.60e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.22  E-value: 4.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  478 AYYRLNRMEEAKRNFTDYLQltQQTNNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGENKTalADAYNRIGDCY 557
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLK--RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA--PDALLKLGLSY 77
                          90
                  ....*....|....*
gi 695333121  558 LDVRNFDEAKHYYSQ 572
Cdd:COG1729    78 LELGDYDKARATLEE 92
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
184-276 5.02e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.22  E-value: 5.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  184 YIRYTQKRYDEALKGFLPLQD---DAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEHAAEMYRILGDAYYHF 260
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKrypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
                          90
                  ....*....|....*.
gi 695333121  261 GDYHKAVTSFRNYLEK 276
Cdd:COG1729    81 GDYDKARATLEELIKK 96
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
742-841 5.98e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.83  E-value: 5.98e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  742 YMRGRVEQAKESFGKYLQTFPDGAFGLNAHYYLCLIGKEQKNYDMILEHSGKLLE-YPDNPFSEEALIMRAEVQFNKVQF 820
Cdd:COG1729     4 LKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKrYPDSPKAPDALLKLGLSYLELGDY 83
                          90       100
                  ....*....|....*....|....*..
gi 695333121  821 ADALASYKMLKEK------ATTAERRL 841
Cdd:COG1729    84 DKARATLEELIKKypdseaAKEARARL 110
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
622-692 9.10e-07

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 51.01  E-value: 9.10e-07
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695333121   622 LYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEA 692
Cdd:TIGR03302   36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
86-277 9.76e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 9.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNssRLDLLgNEERDDMTYQLATCYLKVGNVKEAAIWFE 165
Cdd:COG2956    95 AEELLEKLLELDPDDAEA---LRLLAEIYEQEGDWEKAIEVLE--RLLKL-GPENAHAYCELAELYLEQGDYDEAIEALE 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  166 TLKASSPKYANDcSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNeh 245
Cdd:COG2956   169 KALKLDPDCARA-LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-- 245
                         170       180       190
                  ....*....|....*....|....*....|..
gi 695333121  246 aaEMYRILGDAYYHFGDYHKAVTSFRNYLEKE 277
Cdd:COG2956   246 --DLLLALADLLERKEGLEAALALLERQLRRH 275
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
586-711 1.13e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 1.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  586 YQLALVSGLQKDYSGKITWLNRLAGKYPASPYAisaLYEKGRSYVLMDNNQQAITSFKELLAKYPESPVsrkAAAEIGLL 665
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNPEA---FALLGEILLQLGDLDEAIVLLHEALELDPDEPE---ARLNLGLA 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 695333121  666 YYQNEDYNQAIDAYKQVVQKYPGSDEARLAMRDlksIYVDMNRIDE 711
Cdd:COG4783    82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLAR---AYRALGRPDE 124
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
618-763 1.28e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  618 AISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVsrkAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLAMR 697
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695333121  698 DlksIYVDMNRIDE-FAALASAMpgnirfDASEQDSLTYMAAEKIYMR-GRVEQAKESFGKYLQTFPD 763
Cdd:COG4783    80 L---ALLKAGDYDEaLALLEKAL------KLDPEHPEAYLRLARAYRAlGRPDEAIAALEKALELDPD 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
735-994 1.79e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  735 YMAAEKIYMRGRVEQAKESFGKYLQTFPDGAfglNAHYYLCLIGKEQKNYDMILEHSGKLLEYpdNPFSEEALIMRAEVQ 814
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETV---EAHLALGNLYRRRGEYDRAIRIHQKLLER--DPDRAEALLELAQDY 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  815 FNKVQFADALASYKMLKEKATTAERRLLAetgMLRAAYLLKDDTETIHAATALLseaKLSPELKnEALYYRAKAYLNQKG 894
Cdd:COG2956    87 LKAGLLDRAEELLEKLLELDPDDAEALRL---LAEIYEQEGDWEKAIEVLERLL---KLGPENA-HAYCELAELYLEQGD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  895 DKAAMADLKELAKDTRNLygAEAKFLVAQELYNTQNYAAAEKELLNFIDQSTPHAYWLARgfilLSDVYVAMDKKLDARQ 974
Cdd:COG2956   160 YDEAIEALEKALKLDPDC--ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR----LAELYEKLGDPEEALE 233
                         250       260
                  ....*....|....*....|
gi 695333121  975 YLLSLQQNYHADDDIENMIE 994
Cdd:COG2956   234 LLRKALELDPSDDLLLALAD 253
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
620-770 2.25e-06

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 49.56  E-value: 2.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  620 SALYEKGRSyvLMDNNQ--QAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLA-- 695
Cdd:cd15830     4 QELYEKAQT--ALQKGNydGAIKYLEALDSRYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRHPNIDYVyy 81
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695333121  696 MRDLKSIYVDMNRIDEFAalasampgniRFDASEQDSltymaaekiymrGRVEQAKESFGKYLQTFPDGAFGLNA 770
Cdd:cd15830    82 MRGLSNYKLDRSFLQRFF----------PIDRSDRDQ------------SYAREAFQDFKDLIQRYPNSEYATDA 134
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
223-308 2.30e-06

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 47.28  E-value: 2.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   223 KKNYDKAQIVAQNYLSAYPQNEHAAEMYRILGDAYYHFGDYHKAVTSFRNYLEK-ENAPRR-DALYMLGLSYFQTGVFSK 300
Cdd:TIGR02795   13 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKyPKSPKApDALLKLGMSLQELGDKEK 92

                   ....*...
gi 695333121   301 AAETLGEV 308
Cdd:TIGR02795   93 AKATLQQV 100
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
547-694 2.47e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 2.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  547 ADAYNRIGDCYLDVRNFDEAKHYYSQAEamntpsgdysfyqlalvsglqkdysgkitwlnRLAGKYPAspyaisALYEKG 626
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKAL--------------------------------RLDPDNAD------ALLDLA 58
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 695333121  627 RSYVLMDNNQQAITSFKELLAKYPESPvsrKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARL 694
Cdd:COG4235    59 EALLAAGDTEEAEELLERALALDPDNP---EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
145-362 4.84e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 4.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  145 YQLATCYLKVGNVKEAAIWFETLKASSPKYAnDCSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKK 224
Cdd:COG0457    12 NNLGLAYRRLGRYEEAIEDYEKALELDPDDA-EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  225 NYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKENAPRrDALYMLGLSYFQTGVFSKAAET 304
Cdd:COG0457    91 RYEEALEDYDKALELDPDD---AEALYNLGLALLELGRYDEAIEAYERALELDPDDA-DALYNLGIALEKLGRYEEALEL 166
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 695333121  305 LGEVTTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNANPKIKEQAAYNYAL 362
Cdd:COG0457   167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
595-702 5.04e-06

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 49.03  E-value: 5.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  595 QKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQ 674
Cdd:PRK10803  156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235
                          90       100
                  ....*....|....*....|....*...
gi 695333121  675 AIDAYKQVVQKYPGSDEARLAMRDLKSI 702
Cdd:PRK10803  236 AKAVYQQVIKKYPGTDGAKQAQKRLNAM 263
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
151-248 5.85e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 5.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  151 YLKVGNVKEAAIWFETLKASSPK--YANDCSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVP---YYIAEIYAIKKN 225
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdalLKLGLSYLELGD 82
                          90       100
                  ....*....|....*....|...
gi 695333121  226 YDKAQIVAQNYLSAYPQNEHAAE 248
Cdd:COG1729    83 YDKARATLEELIKKYPDSEAAKE 105
COG3899 COG3899
Predicted ATPase [General function prediction only];
434-595 7.67e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 50.24  E-value: 7.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  434 LFQLGTQAFANTQFEQSIGYFDRSLGL--GQYNRQTKADALYWRGEAYYRLNRMEEAKRNFTDYLQLT--------QQTN 503
Cdd:COG3899   708 LLRAARRALARGAYAEALRYLERALELlpPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARalaalaalRHGN 787
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  504 NEMYALAHYNLGYIafHQKDYVQAQNWFRKYISL-EKGENKTALADAYNRIGDCYLDVRNFDEAKHYYSQAEAMNTPSGD 582
Cdd:COG3899   788 PPASARAYANLGLL--LLGDYEEAYEFGELALALaERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGD 865
                         170
                  ....*....|...
gi 695333121  583 YSFYQLALVSGLQ 595
Cdd:COG3899   866 AALALLALAAAAA 878
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
440-536 1.01e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.37  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  440 QAFANTQFEQSIGYFDRSLGLGQYNRQTkADALYWRGEAYYRLNRMEEAKRNFTDYLQltQQTNNEMYALAHYNLGYIAF 519
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSPLA-PDALYWLGEAYYALGDYDEAAEAFEKLLK--RYPDSPKAPDALLKLGLSYL 78
                          90
                  ....*....|....*..
gi 695333121  520 HQKDYVQAQNWFRKYIS 536
Cdd:COG1729    79 ELGDYDKARATLEELIK 95
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
84-332 1.32e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   84 RNAIAQLRSYLDTYPDTPHANRIYALIASAYFYQGNYDEALALFNSSRLDLLGNEERDDMTYQLATCYL---KVGNVKEA 160
Cdd:COG3914    18 LAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALllqALGRYEEA 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  161 AIWFETLKASSPKYAnDCSYYISYIRYTQKRYDEALKGF---LPLQDDAkykALVPYYIAEIYAIKKNYDKAQIVAQNYL 237
Cdd:COG3914    98 LALYRRALALNPDNA-EALFNLGNLLLALGRLEEALAALrraLALNPDF---AEAYLNLGEALRRLGRLEEAIAALRRAL 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  238 SAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKenAPRRDALYMLGLSYFQTGVFSKAAETLGEVTtenDALTQ 317
Cdd:COG3914   174 ELDPDN---AEALNNLGNALQDLGRLEEAIAAYRRALEL--DPDNADAHSNLLFALRQACDWEVYDRFEELL---AALAR 245
                         250
                  ....*....|....*
gi 695333121  318 NAYLHMGLAYLHLAE 332
Cdd:COG3914   246 GPSELSPFALLYLPD 260
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
5-271 1.55e-05

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 47.55  E-value: 1.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121     5 ISRLICAVACCVPVALQAQTSEKITSPVN------LYKEGKELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSA 78
Cdd:TIGR03302    1 LLLLILLLALLLLLAGCSSKKKKEADPVEewpaeeLYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAY 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121    79 YELKD-RNAIAQLRSYLDTYPDTPHANRIYALIASAYFyqgnydealALFNSSRLDLlgneerddmtyqlatcylkvGNV 157
Cdd:TIGR03302   81 YKSGDyAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY---------NQIDRVDRDQ--------------------TAA 131
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   158 KEAAIWFETLKASSP--KYANDCSYYISYIRytqkrydEALkgflplqddAKYKalvpYYIAEIYAIKKNYDKAQIVAQN 235
Cdd:TIGR03302  132 REAFEAFQELIRRYPnsEYAPDAKKRMDYLR-------NRL---------AGKE----LYVARFYLKRGAYVAAINRFQT 191
                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 695333121   236 YLSAYPQNEHAAEMYRILGDAYYHFGDYHKAVTSFR 271
Cdd:TIGR03302  192 VVENYPDTPATEEALARLVEAYLKLGLTDLAQDAAA 227
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
180-307 3.33e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 3.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  180 YYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYH 259
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE---PEARLNLGLALLK 84
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 695333121  260 FGDYHKAVTSFRNYLeKENAPRRDALYMLGLSYFQTGVFSKAAETLGE 307
Cdd:COG4783    85 AGDYDEALALLEKAL-KLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
616-868 4.83e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 4.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  616 PYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPvsrKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLA 695
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDA---EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  696 mrdLKSIYVDMNRIDE-FAALASAmpgnIRFDASEQDSLTYMaAEKIYMRGRVEQAKESFGKYLQTFPDGAfglNAHYYL 774
Cdd:COG0457    82 ---LGLALQALGRYEEaLEDYDKA----LELDPDDAEALYNL-GLALLELGRYDEAIEAYERALELDPDDA---DALYNL 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  775 CLIGKEQKNYDMILEHSGKLLEYPDNPFSEEALIMRAEVQFNKVQFADALASYKMLKEKATTAERRLLAETGMLRAAYLL 854
Cdd:COG0457   151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
                         250
                  ....*....|....
gi 695333121  855 KDDTETIHAATALL 868
Cdd:COG0457   231 LALRLAALALYQYR 244
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
637-765 5.04e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 5.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  637 QAITSFKELLAKYPESPvsrKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLamrDLKSIYVDMNRIDEFAALA 716
Cdd:COG4235     1 EAIARLRQALAANPNDA---EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALL---DLAEALLAAGDTEEAEELL 74
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 695333121  717 SAMpgnIRFDASEQDSLTYMAAEKiYMRGRVEQAKESFGKYLQTFPDGA 765
Cdd:COG4235    75 ERA---LALDPDNPEALYLLGLAA-FQQGDYAEAIAAWQKLLALLPADA 119
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
434-537 5.49e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 5.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  434 LFQLGTQAFANTQFEQSIGYFDRSLGLgqynRQTKADALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYN 513
Cdd:COG4235    20 WLLLGRAYLRLGRYDEALAAYEKALRL----DPDNADALLDLAEALLAAGDTEEAEELLERALAL-----DPDNPEALYL 90
                          90       100
                  ....*....|....*....|....
gi 695333121  514 LGYIAFHQKDYVQAQNWFRKYISL 537
Cdd:COG4235    91 LGLAAFQQGDYAEAIAAWQKLLAL 114
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
69-199 6.51e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 6.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   69 EAEYMLVCSAYELKDRN-AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNSSrLDLLGNEErdDMTYQL 147
Cdd:COG4783     5 EALYALAQALLLAGDYDeAEALLEKALELDPDNPEA---FALLGEILLQLGDLDEAIVLLHEA-LELDPDEP--EARLNL 78
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 695333121  148 ATCYLKVGNVKEAAIWFETLKASSPKYAnDCSYYISYIRYTQKRYDEALKGF 199
Cdd:COG4783    79 GLALLKAGDYDEALALLEKALKLDPEHP-EAYLRLARAYRALGRPDEAIAAL 129
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
290-399 6.87e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.06  E-value: 6.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  290 LSYFQTGVFSKAAETLGEVTTE--NDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNANPKIKEQAAYNYALCIHET 367
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRypNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 695333121  368 SYSAfgESVTVFEKFLNEFPTSEYAEMVSSYL 399
Cdd:COG1729    81 GDYD--KARATLEELIKKYPDSEAAKEARARL 110
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
469-577 8.15e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 8.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  469 ADALYWRGEAYYRLNRMEEAKRNFTDYLQLTQQTnnemyALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGEnktalAD 548
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-----ADALLDLAEALLAAGDTEEAEELLERALALDPDN-----PE 86
                          90       100
                  ....*....|....*....|....*....
gi 695333121  549 AYNRIGDCYLDVRNFDEAKHYYSQAEAMN 577
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
214-305 9.97e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 9.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  214 YYIAEIYAIKKNYDKAQIVAQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKENAPRRdALYMLGLSYF 293
Cdd:COG4235    21 LLLGRAYLRLGRYDEALAAYEKALRLDPDN---ADALLDLAEALLAAGDTEEAEELLERALALDPDNPE-ALYLLGLAAF 96
                          90
                  ....*....|..
gi 695333121  294 QTGVFSKAAETL 305
Cdd:COG4235    97 QQGDYAEAIAAW 108
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
86-286 1.17e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.00  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFE 165
Cdd:COG0457    27 AIEDYEKALELDPDDAEA---LYNLGLAYLRLGRYEEALADYEQA---LELDPDDAEALNNLGLALQALGRYEEALEDYD 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  166 TLKASSPKYAnDCSYYISYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEH 245
Cdd:COG0457   101 KALELDPDDA-EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 695333121  246 AAEMYRILGDAYYHFGDYHKAVTSFRNYLEKENAPRRDALY 286
Cdd:COG0457   180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
233-347 1.20e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  233 AQNYLSAYPQNehaAEMYRILGDAYYHFGDYHKAVTSFRNYLEKeNAPRRDALYMLGLSYFQTGVFSKAAETLGEVtTEN 312
Cdd:COG4235     6 LRQALAANPND---AEGWLLLGRAYLRLGRYDEALAAYEKALRL-DPDNADALLDLAEALLAAGDTEEAEELLERA-LAL 80
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 695333121  313 DALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASN 347
Cdd:COG4235    81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
478-577 1.25e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  478 AYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNwFRKYISLEKGEnktalADAYNRIGDCY 557
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL-----DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNN-----AEALLNLAELL 69
                          90       100
                  ....*....|....*....|
gi 695333121  558 LDVRNFDEAKHYYSQAEAMN 577
Cdd:COG3063    70 LELGDYDEALAYLERALELD 89
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
214-363 1.50e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 44.49  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  214 YYIAEIY---AIKKNYDKAQIVAQNYL---SAYPQNEHAAEM------YRILGDAYYHFGDYHKAVTSFRNYLEKENAPR 281
Cdd:COG4700    44 YFFAEVLpelRNSRDARRVQRAARNALdpgRELRELEKALEFadtvqnRVRLADALLELGRYDEAIELYEEALTGIFADD 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  282 RDALYMLGLSYFQTGVFSKAAETLGEVTTEN-DALTQNAYLHMGLAYLHLAEKNKARMAFEQAAASNANPKikeqAAYNY 360
Cdd:COG4700   124 PHILLGLAQALFELGRYAEALETLEKLIAKNpDFKSSDAHLLYARALEALGDLEAAEAELEALARRYSGPE----ARYRY 199

                  ...
gi 695333121  361 ALC 363
Cdd:COG4700   200 AKF 202
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
620-692 1.81e-04

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 43.85  E-value: 1.81e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695333121   620 SALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEA 692
Cdd:pfam13525    5 SELYEAGQTALQKGDYGDAIKKLEALDNRYPFSPYAEQAQLDLIYAYYKDADYADALAAAERFLRLYPTHPNI 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
621-948 2.27e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 2.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   621 ALYEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRkaaAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARLamrDLK 700
Cdd:TIGR02917   24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEAR---FLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLP---LLA 97
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   701 SIYVDMNRIDEFAALASAMPGNIRFDASEQDSLTYMAAekiYMRGRVEQAKESFGKYLQTFPDGAFGLNAHYYLCLigkE 780
Cdd:TIGR02917   98 RAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAY---LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL---A 171
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   781 QKNYDMILEHSGKLLE-YPDNpfsEEALIMRAEVQFNKVQFADALASYKMLKEKATTAERRLLAETGMLRAAyllKDDTE 859
Cdd:TIGR02917  172 ENRFDEARALIDEVLTaDPGN---VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEA---GEFEE 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   860 TIHAATALLSEAKLSPelknEALYYRAKAYLNQKGDKAAMADLKELAKDTRNLYgaEAKFLVAQELYNTQNYAAAEkELL 939
Cdd:TIGR02917  246 AEKHADALLKKAPNSP----LAHYLKALVDFQKKNYEDARETLQDALKSAPEYL--PALLLAGASEYQLGNLEQAY-QYL 318

                   ....*....
gi 695333121   940 NFIDQSTPH 948
Cdd:TIGR02917  319 NQILKYAPN 327
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
223-399 2.60e-04

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 43.72  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  223 KKNYDKAQIVAQNYLSAYPQNEHAAEMYRILGDAYYHFGDYHKAVTSFRNYLEK----ENAPrrDALYMLGLSYFQTGVF 298
Cdd:COG4105    45 KGDYEKAIKLFEELEPRYPGSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLypnsPNAD--YAYYLRGLSYYEQSPD 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  299 S--------KAAETLGEVTTE--NDALTQNAYLHMGLAYLHLAEK--NKARMAFE----QAAASNAnpkikEQAAYNY-- 360
Cdd:COG4105   123 SdrdqtstrKAIEAFQELINRypDSEYAEDAKKRIDELRDKLARKelEVARYYLKrgayVAAINRF-----QNVLEDYpd 197
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 695333121  361 ------ALCIHETSYSAFG---ESVTVFEKFLNEFPTSEYAEMVSSYL 399
Cdd:COG4105   198 tpaveeALYLLVEAYYALGrydEAQDAAAVLGKNYPDSPYLKDAEKLL 245
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
623-689 3.21e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.01  E-value: 3.21e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 695333121   623 YEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGS 689
Cdd:pfam13432    1 LALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
186-345 3.21e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.37  E-value: 3.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  186 RYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQNEHAAEMYRILGDAYYHFGDYHK 265
Cdd:COG4785    12 LALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDL 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  266 AVTSFRNYLEkENAPRRDALYMLGLSYFQTGVFSKAAETLGEVtTENDALTQNAYLHMGLAYLHLAEKNKARMAFEQAAA 345
Cdd:COG4785    92 AIADFDQALE-LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA-LELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
614-693 5.57e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 5.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  614 ASPYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPvsrKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEAR 693
Cdd:COG4235    12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA---DALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
880-939 5.64e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 5.64e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695333121   880 EALYYRAKAYLNQKGDKAAMADLKE-LAKDTRNlygAEAKFLVAQELYNTQNYAAAEKELL 939
Cdd:TIGR02917   23 EELIEAAKSYLQKNKYKAAIIQLKNaLQKDPND---AEARFLLGKIYLALGDYAAAEKELR 80
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
666-806 5.90e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  666 YYQNEDYNQAIDAYKQVVQKYPGSDEARLAMrdlksiyvdmnridefaalasampgnirfdaseqdsltYMAAEKIYMRG 745
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDAL--------------------------------------YWLGEAYYALG 44
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 695333121  746 RVEQAKESFGKYLQTFPDGAFGLNAHYYLCLIGKEQKNYDMILEHSGKLLE-YPDNPFSEEA 806
Cdd:COG1729    45 DYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKkYPDSEAAKEA 106
YfiO pfam13525
Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards ...
554-703 7.04e-04

Outer membrane lipoprotein; This outer membrane lipoprotein carries a TPR-like region towards its N-terminal. YfiO in E.coli is one of three outer membrane lipoproteins that form a multicomponent YaeT complex in the outer membrane of Gram-negative bacteria that is involved in the targeting and folding of beta-barrel outer membrane proteins. YfiO is the only essential lipoprotein component of the complex. It is required for the proper assembly and/or targeting of outer membrane proteins to the outer membrane. Through its interactions with NlpB it maintains the functional integrity of the YaeT complex.


Pssm-ID: 433282 [Multi-domain]  Cd Length: 200  Bit Score: 41.93  E-value: 7.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   554 GDCYLDVRNFDEAKHYYsqaeamntPSGDYSF---YQLALVSGLQKDYSGKITWLNRLAGKYPASPYAISALYEKGRSYV 630
Cdd:pfam13525   18 GDYGDAIKKLEALDNRY--------PFSPYAEqaqLDLIYAYYKDADYADALAAAERFLRLYPTHPNIDYVYYMRGLSNF 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   631 LMDNN-----------QQAITSFKELLAKYPESPVSRKAAA--------------EIGLLYYQNEDYNQAIDAYKQVVQK 685
Cdd:pfam13525   90 AQDRDffrsdrdpesaRQAFEDFATLIRKYPDSEYATDAEQritylrerlarhelYIAKFYLKRGAYVAAANRYRYVLKN 169
                          170
                   ....*....|....*...
gi 695333121   686 YPGSDEARLAMRDLKSIY 703
Cdd:pfam13525  170 YPDTPATREALAIMVEAY 187
TPR_12 pfam13424
Tetratricopeptide repeat;
508-576 7.07e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.29  E-value: 7.07e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 695333121   508 ALAHYNLGYIAFHQKDYVQAQNWFRK---YISLEKGENKTALADAYNRIGDCYLDVRNFDEAKHYYSQAEAM 576
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKaleIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
86-197 1.11e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNSSrLDLLGNEErdDMTYQLATCYLKVGNVKEAAIWFE 165
Cdd:COG4235     2 AIARLRQALAANPNDAEG---WLLLGRAYLRLGRYDEALAAYEKA-LRLDPDNA--DALLDLAEALLAAGDTEEAEELLE 75
                          90       100       110
                  ....*....|....*....|....*....|..
gi 695333121  166 TLKASSPKYAnDCSYYISYIRYTQKRYDEALK 197
Cdd:COG4235    76 RALALDPDNP-EALYLLGLAAFQQGDYAEAIA 106
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
103-243 1.26e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  103 ANRIYALIASAYFYQGNYDEALALFNSSrldLLGNEERDDMTYQLATCYLKVGNVKEAAIWFETLKASSPKYANDcSYYI 182
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKA---LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA-RLNL 78
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695333121  183 SYIRYTQKRYDEALKGFLPLQDDAKYKALVPYYIAEIYAIKKNYDKAQIVAQNYLSAYPQN 243
Cdd:COG4783    79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
86-303 1.75e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.82  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   86 AIAQLRSYLDTYPDTPHAnriYALIASAYFYQGNYDEALALFNS-SRLDLLGNEERDDMTYQLATCYLKvGNVKEAAIWF 164
Cdd:COG3071   104 ALATLEALRAGAPRHPQV---LRLLLQAYRQLGDWEELLELLPAlRKHKALSAEEAQALERRAYLGLLR-QAARDAEALK 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  165 ETLKASSPKYANDCSYYISYIRY--TQKRYDEALKGFLPLQDDAKYKALVPYYiAEIYAikKNYDKAQIVAQNYLSAYPQ 242
Cdd:COG3071   180 ALWKALPRAERRDPELAAAYARAliALGDHDEAERLLREALKRQWDPRLVRLY-GRLQG--GDPAKQLKRAEKWLKKHPN 256
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 695333121  243 NehaAEMYRILGDAYYHFGDYHKAvtsfRNYLEK--ENAPRRDALYMLGLSYFQTGVFSKAAE 303
Cdd:COG3071   257 D---PDLLLALGRLCLRNQLWGKA----REYLEAalALRPSAEAYAELARLLEQLGDPEEAAE 312
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
616-694 1.91e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.05  E-value: 1.91e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 695333121  616 PYAISALYEKGRSYVLMDNNQQAITSFKELLAKYPESPvsrKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPGSDEARL 694
Cdd:COG4785    70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA---EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
446-538 3.07e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 3.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  446 QFEQSIGYFDRSLGLGQYNrqtkADALYWRGEAYYRLNRMEEAKRnFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYV 525
Cdd:COG3063     7 DLEEAEEYYEKALELDPDN----ADALNNLGLLLLEQGRYDEAIA-LEKALKL-----DPNNAEALLNLAELLLELGDYD 76
                          90
                  ....*....|...
gi 695333121  526 QAQNWFRKYISLE 538
Cdd:COG3063    77 EALAYLERALELD 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
34-113 4.25e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 4.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   34 LYKEGKELFLQKNYAAAMPPLRTFVRQKADVNLKEEAEYMLVCSAYELKDRN-AIAQLRSYLDTYPDTPHANRIYALIAS 112
Cdd:COG1729    33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDkARATLEELIKKYPDSEAAKEARARLAR 112

                  .
gi 695333121  113 A 113
Cdd:COG1729   113 L 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
265-401 5.10e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 5.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  265 KAVTSFRNYLEK--ENAprrDALYMLGLSYFQTGVFSKAAETLGEVTtENDALTQNAYLHMGLAYLHLAEKNKARMAFEQ 342
Cdd:COG4235     1 EAIARLRQALAAnpNDA---EGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPDNADALLDLAEALLAAGDTEEAEELLER 76
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 695333121  343 AAASNANPkikEQAAYNYALCIHETsySAFGESVTVFEKFLNEFPTSEYAEMVSSYLVE 401
Cdd:COG4235    77 ALALDPDN---PEALYLLGLAAFQQ--GDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
469-573 5.33e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 5.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121  469 ADALYWRGEAYYRLNRMEEAKRNFTDYLQLtqqtnNEMYALAHYNLGYIAFHQKDYVQAQNWFRKYISLEKGEnktalAD 548
Cdd:COG5010    54 FAIESPSDNLYNKLGDFEESLALLEQALQL-----DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-----PN 123
                          90       100
                  ....*....|....*....|....*
gi 695333121  549 AYNRIGDCYLDVRNFDEAKHYYSQA 573
Cdd:COG5010   124 AYSNLAALLLSLGQDDEAKAALQRA 148
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
494-688 6.36e-03

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 39.46  E-value: 6.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   494 DYLQLTQQTNNEMYALAHYNLgyiafHQKDYVQAQNWFRKYISLEKGENKTA-----LADAYNRIGDcyldvrnfdeakh 568
Cdd:TIGR03302   24 EADPVEEWPAEELYEEAKEAL-----DSGDYTEAIKYFEALESRYPFSPYAEqaqldLAYAYYKSGD------------- 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695333121   569 yYSQAEAM---------NTPSGDYSFYQLALVSGLQKDYSGK--------ITWLNRLAGKYPASPYAISAL--------- 622
Cdd:TIGR03302   86 -YAEAIAAadrfirlhpNHPDADYAYYLRGLSNYNQIDRVDRdqtaareaFEAFQELIRRYPNSEYAPDAKkrmdylrnr 164
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 695333121   623 -----YEKGRSYVLMDNNQQAITSFKELLAKYPESPVSRKAAAEIGLLYYQNEDYNQAIDAYKQVVQKYPG 688
Cdd:TIGR03302  165 lagkeLYVARFYLKRGAYVAAINRFQTVVENYPDTPATEEALARLVEAYLKLGLTDLAQDAAAVLGANYPD 235
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
111-175 9.27e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.77  E-value: 9.27e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 695333121   111 ASAYFYQGNYDEALALFNSSRLDLLGNEERDDMTYQLATCYLKVGNVKEAAIWFETLKASSPKYA 175
Cdd:pfam13432    4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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