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Conserved domains on  [gi|694075155|ref|WP_032420970|]
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MULTISPECIES: TraY domain-containing protein [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraY super family cl27023
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 2-55 3.29e-19

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


The actual alignment was detected with superfamily member PRK13740:

Pssm-ID: 452705  Cd Length: 70  Bit Score: 72.51  E-value: 3.29e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 694075155  2 LLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSELAVPGGEKE 55
Cdd:PRK13740 15 SLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEIFREVAEET 68
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
2-55 3.29e-19

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 72.51  E-value: 3.29e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 694075155  2 LLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSELAVPGGEKE 55
Cdd:PRK13740 15 SLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEIFREVAEET 68
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 2-47 2.42e-17

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 66.89  E-value: 2.42e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 694075155   2 LLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSEL 47
Cdd:pfam05509  2 TLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEK 47
 
Name Accession Description Interval E-value
PRK13740 PRK13740
conjugal transfer relaxosome protein TraY;
2-55 3.29e-19

conjugal transfer relaxosome protein TraY;


Pssm-ID: 184292  Cd Length: 70  Bit Score: 72.51  E-value: 3.29e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 694075155  2 LLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSELAVPGGEKE 55
Cdd:PRK13740 15 SLKLDEDTNNKLIEAKERSGRSKTNEVQIRLRDHLKRFPDFYNSEIFREVAEET 68
TraY pfam05509
TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved ...
 2-47 2.42e-17

TraY domain; This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid. These proteins have a ribbon-helix-helix fold and are likely to be DNA-binding proteins.


Pssm-ID: 428502  Cd Length: 49  Bit Score: 66.89  E-value: 2.42e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 694075155   2 LLKLDEETNRRLIKAKDRSRRSKTAEAYLRLKDHLERFPDFYNSEL 47
Cdd:pfam05509  2 TLQLDEETNKLLEEAAERSGRSKRKEAALRLKDHLDRFPDIYESEK 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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