NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|686445760|ref|WP_031926473|]
View 

SAV1978 family virulence-associated passenger protein [Staphylococcus aureus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_Orf51 super family cl05615
Phage Conserved Open Reading Frame 51; Family of conserved bacteriophage open reading frames.
 2-80 1.38e-43

Phage Conserved Open Reading Frame 51; Family of conserved bacteriophage open reading frames.


The actual alignment was detected with superfamily member pfam06194:

Pssm-ID: 283779  Cd Length: 80  Bit Score: 135.61  E-value: 1.38e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 686445760   2 TDNARKEYLNQFFGFKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFDTAEELETYIKQHGLEYEEQKQLTLF 80
Cdd:pfam06194  2 TDSACKEYLNQFFGSKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFDTAEELETYIKQHDLEYEEQKQLTLF 80
 
Name Accession Description Interval E-value
Phage_Orf51 pfam06194
Phage Conserved Open Reading Frame 51; Family of conserved bacteriophage open reading frames.
 2-80 1.38e-43

Phage Conserved Open Reading Frame 51; Family of conserved bacteriophage open reading frames.


Pssm-ID: 283779  Cd Length: 80  Bit Score: 135.61  E-value: 1.38e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 686445760   2 TDNARKEYLNQFFGFKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFDTAEELETYIKQHGLEYEEQKQLTLF 80
Cdd:pfam06194  2 TDSACKEYLNQFFGSKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFDTAEELETYIKQHDLEYEEQKQLTLF 80
 
Name Accession Description Interval E-value
Phage_Orf51 pfam06194
Phage Conserved Open Reading Frame 51; Family of conserved bacteriophage open reading frames.
 2-80 1.38e-43

Phage Conserved Open Reading Frame 51; Family of conserved bacteriophage open reading frames.


Pssm-ID: 283779  Cd Length: 80  Bit Score: 135.61  E-value: 1.38e-43
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 686445760   2 TDNARKEYLNQFFGFKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFDTAEELETYIKQHGLEYEEQKQLTLF 80
Cdd:pfam06194  2 TDSACKEYLNQFFGSKRYLYQDNERVAHIHVVNGTYYFHGHIVPGWQGVKKTFDTAEELETYIKQHDLEYEEQKQLTLF 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH