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Conserved domains on  [gi|686422860|ref|WP_031917677|]
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hypothetical protein [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4584 super family cl27787
Transposase [Mobilome: prophages, transposons];
14-73 1.90e-07

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG4584:

Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 45.98  E-value: 1.90e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 686422860  14 MKGIKPNYAELGRQYNCDPRTVKKYYEAGKENELERLKKRqqnKKASKLDPFKEIINKKL 73
Cdd:COG4584   13 LLREGLSIREIARELGISRNTVRKYLRRAEEWPELYPRRR---PRPSKLDPYKEYIDEWL 69
 
Name Accession Description Interval E-value
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
14-73 1.90e-07

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 45.98  E-value: 1.90e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 686422860  14 MKGIKPNYAELGRQYNCDPRTVKKYYEAGKENELERLKKRqqnKKASKLDPFKEIINKKL 73
Cdd:COG4584   13 LLREGLSIREIARELGISRNTVRKYLRRAEEWPELYPRRR---PRPSKLDPYKEYIDEWL 69
transpos_IS21 NF033546
IS21 family transposase;
22-69 3.04e-05

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 39.50  E-value: 3.04e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 686422860  22 AELGRQYNCDPRTVKKYYEAGKENELERLKKRQQnkKASKLDPFKEII 69
Cdd:NF033546  12 REIARELGISRNTVRKYLRRAGLDEPPKYERRPP--RPSKLDPFEPYI 57
 
Name Accession Description Interval E-value
COG4584 COG4584
Transposase [Mobilome: prophages, transposons];
14-73 1.90e-07

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 443641 [Multi-domain]  Cd Length: 484  Bit Score: 45.98  E-value: 1.90e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 686422860  14 MKGIKPNYAELGRQYNCDPRTVKKYYEAGKENELERLKKRqqnKKASKLDPFKEIINKKL 73
Cdd:COG4584   13 LLREGLSIREIARELGISRNTVRKYLRRAEEWPELYPRRR---PRPSKLDPYKEYIDEWL 69
transpos_IS21 NF033546
IS21 family transposase;
22-69 3.04e-05

IS21 family transposase;


Pssm-ID: 468077 [Multi-domain]  Cd Length: 296  Bit Score: 39.50  E-value: 3.04e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 686422860  22 AELGRQYNCDPRTVKKYYEAGKENELERLKKRQQnkKASKLDPFKEII 69
Cdd:NF033546  12 REIARELGISRNTVRKYLRRAGLDEPPKYERRPP--RPSKLDPFEPYI 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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