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Conserved domains on  [gi|686138639|ref|WP_031775895|]
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Ig-like domain-containing protein [Staphylococcus aureus]

Protein Classification

Ig domain-containing protein( domain architecture ID 11475235)

Ig-like domain-containing protein similar to Escherichia virus Lambda tail tube protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 39-150 1.30e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


:

Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 43.91  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686138639  39 GTYQVAWEENGKESSKVDVPQFKTNPILVSGVSFIPETKSITVNADDNVEPNIAPSTATNKTLKYTSEHPEFVTVDErTG 118
Cdd:COG5492  317 GGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDS-NG 395

                         90       100       110
                 ....*....|....*....|....*....|..
gi 686138639 119 AIHGVAEGTSVITATSTDGSdKSGQITVTVTN 150
Cdd:COG5492  396 LVTAVAAGTATITATTKDGG-KTATCTVTVTA 426
 
Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 39-150 1.30e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 43.91  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686138639  39 GTYQVAWEENGKESSKVDVPQFKTNPILVSGVSFIPETKSITVNADDNVEPNIAPSTATNKTLKYTSEHPEFVTVDErTG 118
Cdd:COG5492  317 GGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDS-NG 395

                         90       100       110
                 ....*....|....*....|....*....|..
gi 686138639 119 AIHGVAEGTSVITATSTDGSdKSGQITVTVTN 150
Cdd:COG5492  396 LVTAVAAGTATITATTKDGG-KTATCTVTVTA 426
BID_2 smart00635
Bacterial Ig-like domain 2;
67-144 3.32e-04

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 37.38  E-value: 3.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686138639    67 VSGVSFIPETKSITVNADDNVEPNIAPSTAT-NKTLKYTSEHPEFVTVDERTG-AIHGVAEGTSVITATSTDGSDKSGQI 144
Cdd:smart00635   2 VTSVTVTPTTASVKKGLTLQLTATVTPSSAGvTGKVTWTSSNPSVATVVNASGlVVTAVAAGTATITATSGDGSSATGVI 81
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 69-140 4.94e-03

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 4.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 686138639   69 GVSFIPETKSITVNADDNVEPNIAPSTATNKTLKYTSEHPEFVTVDeRTGAIHGVAEGTSVITATSTDGSDK 140
Cdd:pfam02368   2 SVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVS-QTGLVTGVAAGKATITATSKDGNDK 72
 
Name Accession Description Interval E-value
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 39-150 1.30e-05

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 43.91  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686138639  39 GTYQVAWEENGKESSKVDVPQFKTNPILVSGVSFIPETKSITVNADDNVEPNIAPSTATNKTLKYTSEHPEFVTVDErTG 118
Cdd:COG5492  317 GGVVTAAATTGVTVVTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDS-NG 395

                         90       100       110
                 ....*....|....*....|....*....|..
gi 686138639 119 AIHGVAEGTSVITATSTDGSdKSGQITVTVTN 150
Cdd:COG5492  396 LVTAVAAGTATITATTKDGG-KTATCTVTVTA 426
BID_2 smart00635
Bacterial Ig-like domain 2;
67-144 3.32e-04

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 37.38  E-value: 3.32e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686138639    67 VSGVSFIPETKSITVNADDNVEPNIAPSTAT-NKTLKYTSEHPEFVTVDERTG-AIHGVAEGTSVITATSTDGSDKSGQI 144
Cdd:smart00635   2 VTSVTVTPTTASVKKGLTLQLTATVTPSSAGvTGKVTWTSSNPSVATVVNASGlVVTAVAAGTATITATSGDGSSATGVI 81
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 69-140 4.94e-03

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 34.29  E-value: 4.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 686138639   69 GVSFIPETKSITVNADDNVEPNIAPSTATNKTLKYTSEHPEFVTVDeRTGAIHGVAEGTSVITATSTDGSDK 140
Cdd:pfam02368   2 SVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVS-QTGLVTGVAAGKATITATSKDGNDK 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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