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Conserved domains on  [gi|685976857|ref|WP_031685678|]
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MULTISPECIES: HAD family phosphatase [Pseudomonas]

Protein Classification

HAD family hydrolase( domain architecture ID 11428160)

haloacid dehalogenase (HAD) family hydrolase uses a nucleophilic aspartate in the phosphoryl transfer reaction; the HAD family includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

CATH:  3.30.1240.10
EC:  3.-.-.-
Gene Ontology:  GO:0016787

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK13478 super family cl30304
phosphonoacetaldehyde hydrolase; Provisional
132-247 1.85e-21

phosphonoacetaldehyde hydrolase; Provisional


The actual alignment was detected with superfamily member PRK13478:

Pssm-ID: 184075 [Multi-domain]  Cd Length: 267  Bit Score: 89.92  E-value: 1.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 132 LAGARPWPAPdgCWQALARLGIERLDGCVLVSAQPRQLQAGLNAGLWTIGLAASGPSCGLSPADWDALGHTERDRLRADA 211
Cdd:PRK13478 154 VPAGRPYPWM--ALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERA 231
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 685976857 212 TLELYRLGVHSVIDHLGELQPCLHDLAVRRLKGEKP 247
Cdd:PRK13478 232 RARLRAAGAHYVIDTIADLPAVIADIEARLARGERP 267
 
Name Accession Description Interval E-value
PRK13478 PRK13478
phosphonoacetaldehyde hydrolase; Provisional
132-247 1.85e-21

phosphonoacetaldehyde hydrolase; Provisional


Pssm-ID: 184075 [Multi-domain]  Cd Length: 267  Bit Score: 89.92  E-value: 1.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 132 LAGARPWPAPdgCWQALARLGIERLDGCVLVSAQPRQLQAGLNAGLWTIGLAASGPSCGLSPADWDALGHTERDRLRADA 211
Cdd:PRK13478 154 VPAGRPYPWM--ALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERA 231
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 685976857 212 TLELYRLGVHSVIDHLGELQPCLHDLAVRRLKGEKP 247
Cdd:PRK13478 232 RARLRAAGAHYVIDTIADLPAVIADIEARLARGERP 267
HAD_PHN cd02586
Phosphonoacetaldehyde hydrolase (phosphonatase); similar to Bacillus cereus phosphonatase; ...
139-225 8.05e-15

Phosphonoacetaldehyde hydrolase (phosphonatase); similar to Bacillus cereus phosphonatase; Degradation of the ubiquitous natural phosphonate 2-aminoethylphosphonate (AEP) into useable forms of nitrogen, carbon, and phosphorus is a two-step metabolic pathway. The first step, catalyzed by AEP transaminase, involves the transfer of NH3 from AEP to pyruvate, yielding phosphonoacetaldehyde (P-Ald) and alanine. In the second step, phosphonatase catalyzes the hydrolytic P-C bond cleavage of P-Ald to form orthophosphate and acetaldehyde. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319785 [Multi-domain]  Cd Length: 242  Bit Score: 71.56  E-value: 8.05e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 139 PAPDGCWQALARLGIERLDGCVLVSAQPRQLQAGLNAGLWTIGLAASGPSCGLSPADWDALGHTERDRLRADATLELYRL 218
Cdd:cd02586  156 PYPWMCYKNAIELGVYDVAAVVKVGDTVPDIKEGLNAGMWTVGVILSGNELGLSEEEVEALDSEELAARRAEVRQRFKAA 235

                 ....*..
gi 685976857 219 GVHSVID 225
Cdd:cd02586  236 GAHYVID 242
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
42-230 3.57e-06

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 46.36  E-value: 3.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857  42 AEHLRDASLLPFAEAQsfLLRRKpnkseRQRLEQALDEAAEEQaeaITGAVALLESLDEQRIPYAwqdelpesvcqrLA- 120
Cdd:COG0637   52 LRYLLEEYGLDLPEEE--LAARK-----EELYRELLAEEGLPL---IPGVVELLEALKEAGIKIA------------VAt 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 121 -APLGRADALIPLAGARPW--------------PAPDGCWQALARLGIERLDgCVLV--SaqPRQLQAGLNAGLWTIGLA 183
Cdd:COG0637  110 sSPRENAEAVLEAAGLLDYfdvivtgddvargkPDPDIYLLAAERLGVDPEE-CVVFedS--PAGIRAAKAAGMRVVGVP 186
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 685976857 184 AsgpscglspadwdalGHTERDRLRadatlelyrlGVHSVIDHLGEL 230
Cdd:COG0637  187 D---------------GGTAEEELA----------GADLVVDDLAEL 208
 
Name Accession Description Interval E-value
PRK13478 PRK13478
phosphonoacetaldehyde hydrolase; Provisional
132-247 1.85e-21

phosphonoacetaldehyde hydrolase; Provisional


Pssm-ID: 184075 [Multi-domain]  Cd Length: 267  Bit Score: 89.92  E-value: 1.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 132 LAGARPWPAPdgCWQALARLGIERLDGCVLVSAQPRQLQAGLNAGLWTIGLAASGPSCGLSPADWDALGHTERDRLRADA 211
Cdd:PRK13478 154 VPAGRPYPWM--ALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERA 231
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 685976857 212 TLELYRLGVHSVIDHLGELQPCLHDLAVRRLKGEKP 247
Cdd:PRK13478 232 RARLRAAGAHYVIDTIADLPAVIADIEARLARGERP 267
HAD_PHN cd02586
Phosphonoacetaldehyde hydrolase (phosphonatase); similar to Bacillus cereus phosphonatase; ...
139-225 8.05e-15

Phosphonoacetaldehyde hydrolase (phosphonatase); similar to Bacillus cereus phosphonatase; Degradation of the ubiquitous natural phosphonate 2-aminoethylphosphonate (AEP) into useable forms of nitrogen, carbon, and phosphorus is a two-step metabolic pathway. The first step, catalyzed by AEP transaminase, involves the transfer of NH3 from AEP to pyruvate, yielding phosphonoacetaldehyde (P-Ald) and alanine. In the second step, phosphonatase catalyzes the hydrolytic P-C bond cleavage of P-Ald to form orthophosphate and acetaldehyde. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319785 [Multi-domain]  Cd Length: 242  Bit Score: 71.56  E-value: 8.05e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 139 PAPDGCWQALARLGIERLDGCVLVSAQPRQLQAGLNAGLWTIGLAASGPSCGLSPADWDALGHTERDRLRADATLELYRL 218
Cdd:cd02586  156 PYPWMCYKNAIELGVYDVAAVVKVGDTVPDIKEGLNAGMWTVGVILSGNELGLSEEEVEALDSEELAARRAEVRQRFKAA 235

                 ....*..
gi 685976857 219 GVHSVID 225
Cdd:cd02586  236 GAHYVID 242
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
42-230 3.57e-06

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 46.36  E-value: 3.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857  42 AEHLRDASLLPFAEAQsfLLRRKpnkseRQRLEQALDEAAEEQaeaITGAVALLESLDEQRIPYAwqdelpesvcqrLA- 120
Cdd:COG0637   52 LRYLLEEYGLDLPEEE--LAARK-----EELYRELLAEEGLPL---IPGVVELLEALKEAGIKIA------------VAt 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857 121 -APLGRADALIPLAGARPW--------------PAPDGCWQALARLGIERLDgCVLV--SaqPRQLQAGLNAGLWTIGLA 183
Cdd:COG0637  110 sSPRENAEAVLEAAGLLDYfdvivtgddvargkPDPDIYLLAAERLGVDPEE-CVVFedS--PAGIRAAKAAGMRVVGVP 186
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 685976857 184 AsgpscglspadwdalGHTERDRLRadatlelyrlGVHSVIDHLGEL 230
Cdd:COG0637  187 D---------------GGTAEEELA----------GADLVVDDLAEL 208
HAD_BPGM_like cd07526
subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli ...
88-182 8.71e-04

subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH; This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319828 [Multi-domain]  Cd Length: 141  Bit Score: 38.45  E-value: 8.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685976857  88 ITGAVALLESLDeqrIPYAWQDELPESvcqRLAAPLGRADALIPLAG--------ARPWPAPDGCWQALARLGIErLDGC 159
Cdd:cd07526   44 IPGAAAALSALT---LPFCVASNSSRE---RLTHSLGLAGLLAYFEGrifsasdvGRGKPAPDLFLHAAAQMGVA-PERC 116
                         90       100
                 ....*....|....*....|...
gi 685976857 160 VLVSAQPRQLQAGLNAGLWTIGL 182
Cdd:cd07526  117 LVIEDSPTGVRAALAAGMTVFGF 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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