NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|665900753|ref|WP_031267622|]
View 

DUF1024 family protein [Staphylococcus aureus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1024 super family cl05653
Protein of unknown function (DUF1024); This family consists of several hypothetical ...
 1-82 7.04e-35

Protein of unknown function (DUF1024); This family consists of several hypothetical Staphylococcus aureus and Staphylococcus aureus phage phi proteins. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06260:

Pssm-ID: 283838  Cd Length: 82  Bit Score: 113.71  E-value: 7.04e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665900753   1 MNNREKIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEILEGMTNAIQHSVKEGIELDEAVGIMTGQVVYKYEEEQE 80
Cdd:pfam06260  1 MNNREQIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEILEGMTNAIQHSVKEGIELDEAIGIMAGQVIYEYEEELE 80


                 ..
gi 665900753  81 NE 82
Cdd:pfam06260 81 NE 82
 
Name Accession Description Interval E-value
DUF1024 pfam06260
Protein of unknown function (DUF1024); This family consists of several hypothetical ...
 1-82 7.04e-35

Protein of unknown function (DUF1024); This family consists of several hypothetical Staphylococcus aureus and Staphylococcus aureus phage phi proteins. The function of this family is unknown.


Pssm-ID: 283838  Cd Length: 82  Bit Score: 113.71  E-value: 7.04e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665900753   1 MNNREKIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEILEGMTNAIQHSVKEGIELDEAVGIMTGQVVYKYEEEQE 80
Cdd:pfam06260  1 MNNREQIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEILEGMTNAIQHSVKEGIELDEAIGIMAGQVIYEYEEELE 80


                 ..
gi 665900753  81 NE 82
Cdd:pfam06260 81 NE 82
 
Name Accession Description Interval E-value
DUF1024 pfam06260
Protein of unknown function (DUF1024); This family consists of several hypothetical ...
 1-82 7.04e-35

Protein of unknown function (DUF1024); This family consists of several hypothetical Staphylococcus aureus and Staphylococcus aureus phage phi proteins. The function of this family is unknown.


Pssm-ID: 283838  Cd Length: 82  Bit Score: 113.71  E-value: 7.04e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665900753   1 MNNREKIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEILEGMTNAIQHSVKEGIELDEAVGIMTGQVVYKYEEEQE 80
Cdd:pfam06260  1 MNNREQIEQSVISASAYNGNDTEGLLKEIEDVYKKAQAFDEILEGMTNAIQHSVKEGIELDEAIGIMAGQVIYEYEEELE 80


                 ..
gi 665900753  81 NE 82
Cdd:pfam06260 81 NE 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH