|
Name |
Accession |
Description |
Interval |
E-value |
| YejB |
COG4174 |
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ... |
1-339 |
1.51e-121 |
|
ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443333 [Multi-domain] Cd Length: 363 Bit Score: 354.11 E-value: 1.51e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQ-----------------VSQNESGRSSGSKGAQALSD 63
Cdd:COG4174 1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQgtgggatgrisggggdaGGGAAAGGGSKYRGARGLDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 64 EQIEELKAFYGLDKPMLVAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHN 143
Cdd:COG4174 81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 144 SRFDSLSSMLIYMAYALPAYVVGIFLITVFA--FHLEWLPMGGFPGDDFEYMeSSWDQIRTVFAHALLPLIAYAIGDFAI 221
Cdd:COG4174 161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGLTSDNWDQL-SWWGKILDYLWHLTLPVTAMVIGGFAT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 222 LTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIP-IASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAI 300
Cdd:COG4174 240 LTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIvIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFEAV 319
|
330 340 350
....*....|....*....|....*....|....*....
gi 665860422 301 VERDYPTVMGILAITSMLMLIGNIVSDICVALVDPRVRF 339
Cdd:COG4174 320 VNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDF 358
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-341 |
4.67e-82 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 253.52 E-value: 4.67e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQVSQ--------NESGRSSGS------------KGAQA 60
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQagglpgagGEGVRASHAqtgvgnisdsnyRGGRG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 61 LSDEQIEELKAFYGLDKPMLVAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKAL 140
Cdd:PRK15133 81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 141 RHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFA--FHLEWLPMGGFPGDDFEYMeSSWDQIRTVFAHALLPLIAYAIGD 218
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANFDSL-PWYQKITDYLWHITLPVLATVIGG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 219 FAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNS-LIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGY 297
Cdd:PRK15133 240 FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAmLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGY 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 665860422 298 EAIVERDYPTVMGILAITSMLMLIGNIVSDICVALVDPRVRFGD 341
Cdd:PRK15133 320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEG 363
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-338 |
4.48e-56 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 184.96 E-value: 4.48e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQVSQnesgrssgskgaqalSDEQIEELKAFYGLDKPML 80
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPP---------------TDEAIADMRHSLGLDQPLY 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYAL 160
Cdd:TIGR02789 66 VQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSI 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 161 PAYVVGIFLITVFAFHLEWLPMGGFPGddfeymesswdqirtvFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVR 240
Cdd:TIGR02789 146 PNFWLAFLLVWGFSVYLNLLPTNGAGT----------------WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVT 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 241 TAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLML 320
Cdd:TIGR02789 210 YARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFV 289
|
330
....*....|....*...
gi 665860422 321 IGNIVSDICVALVDPRVR 338
Cdd:TIGR02789 290 FCNLIVDLFQALLDPRIR 307
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
131-338 |
9.00e-22 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 90.82 E-value: 9.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 131 SIPLGVAKALRHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFafhlewlpmggfpgddfeymesswdqIRTVFAHALLP 210
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA--------------------------ILSILGHGILP 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 211 LIAYAIGDFAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNID 290
Cdd:pfam00528 55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 665860422 291 GIGLLGYEAIVERDYPTVMGILAITSMLMLIGNIVSDICVALVDPRVR 338
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
113-324 |
8.21e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 63.45 E-value: 8.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 113 LPVTAFFGLATFLLSYAVSIPLGVAkALRHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFAFHLEWLpmggfpgddfey 192
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 193 messwdqirtVFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSV 272
Cdd:cd06261 68 ----------ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 665860422 273 LTVFFGGSFLIETIFNIDGIGL-LGYEAIVERDYPTVMGILAITSMLMLIGNI 324
Cdd:cd06261 138 FARALGEFALVSFLGGGEAPGPgTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YejB |
COG4174 |
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ... |
1-339 |
1.51e-121 |
|
ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443333 [Multi-domain] Cd Length: 363 Bit Score: 354.11 E-value: 1.51e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQ-----------------VSQNESGRSSGSKGAQALSD 63
Cdd:COG4174 1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEQVIAQLQgtgggatgrisggggdaGGGAAAGGGSKYRGARGLDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 64 EQIEELKAFYGLDKPMLVAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHN 143
Cdd:COG4174 81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 144 SRFDSLSSMLIYMAYALPAYVVGIFLITVFA--FHLEWLPMGGFPGDDFEYMeSSWDQIRTVFAHALLPLIAYAIGDFAI 221
Cdd:COG4174 161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGLTSDNWDQL-SWWGKILDYLWHLTLPVTAMVIGGFAT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 222 LTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIP-IASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAI 300
Cdd:COG4174 240 LTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIvIAGFPAAFIGAFFTGSLLIETIFSLDGLGLLGFEAV 319
|
330 340 350
....*....|....*....|....*....|....*....
gi 665860422 301 VERDYPTVMGILAITSMLMLIGNIVSDICVALVDPRVRF 339
Cdd:COG4174 320 VNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDF 358
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-340 |
8.46e-111 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 325.10 E-value: 8.46e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLlqaqvsqnesgrssgskgAQALSDEQIEELKAFYGLDKPML 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALL------------------GPRATPEAIAALRAELGLDQPLL 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYAL 160
Cdd:COG0601 63 VQYLDWLGGLLRGDLGTSFVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISI 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 161 PAYVVGIFLITVFAFHLEWLPMGGfpgddfeyMESSWDQIRTVFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVR 240
Cdd:COG0601 143 PSFWLGLLLILLFAVKLGWLPVSG--------RVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVR 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 241 TAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLML 320
Cdd:COG0601 215 TARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVV 294
|
330 340
....*....|....*....|
gi 665860422 321 IGNIVSDICVALVDPRVRFG 340
Cdd:COG0601 295 LVNLLVDLLYALLDPRIRLG 314
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-341 |
4.67e-82 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 253.52 E-value: 4.67e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQVSQ--------NESGRSSGS------------KGAQA 60
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGQagglpgagGEGVRASHAqtgvgnisdsnyRGGRG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 61 LSDEQIEELKAFYGLDKPMLVAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKAL 140
Cdd:PRK15133 81 LDPEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 141 RHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFA--FHLEWLPMGGFPGDDFEYMeSSWDQIRTVFAHALLPLIAYAIGD 218
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANFDSL-PWYQKITDYLWHITLPVLATVIGG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 219 FAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNS-LIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGY 297
Cdd:PRK15133 240 FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAmLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGY 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 665860422 298 EAIVERDYPTVMGILAITSMLMLIGNIVSDICVALVDPRVRFGD 341
Cdd:PRK15133 320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEG 363
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-338 |
4.48e-56 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 184.96 E-value: 4.48e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQVSQnesgrssgskgaqalSDEQIEELKAFYGLDKPML 80
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEDYLRLSHIPP---------------TDEAIADMRHSLGLDQPLY 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYAL 160
Cdd:TIGR02789 66 VQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSI 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 161 PAYVVGIFLITVFAFHLEWLPMGGFPGddfeymesswdqirtvFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVR 240
Cdd:TIGR02789 146 PNFWLAFLLVWGFSVYLNLLPTNGAGT----------------WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVT 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 241 TAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLML 320
Cdd:TIGR02789 210 YARVRGIKERWVIRRHILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFV 289
|
330
....*....|....*...
gi 665860422 321 IGNIVSDICVALVDPRVR 338
Cdd:TIGR02789 290 FCNLIVDLFQALLDPRIR 307
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-339 |
3.37e-54 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 179.88 E-value: 3.37e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVermllqaqvsqnesgrssgsKGAQALSDEQIEELKAFYGLDKPML 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPF--------------------TGERTLPPEVMANIEAKYHLNDPIM 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLAVLDLGESTRYYE-PVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYA 159
Cdd:PRK09471 61 TQYFSYLKQLAHGDFGPSFKYKDySVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVV 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 160 LPAYVVGIFLITVFAFHLEWLPMGGFPGDDFEYMesswdqirtvfahaLLPLIAYAIGDFAILTMTMKNSLMENLSADYV 239
Cdd:PRK09471 141 IPSFVVAPLLVLIFAITLHWLPGGGWNGGALKFM--------------ILPMVALSLAYIASIARITRGSMIEVLHSNFI 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 240 RTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLM 319
Cdd:PRK09471 207 RTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALT 286
|
330 340
....*....|....*....|
gi 665860422 320 LIGNIVSDICVALVDPRVRF 339
Cdd:PRK09471 287 ILFNAIVDVLYAVIDPKIRY 306
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
1-338 |
7.71e-50 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 169.61 E-value: 7.71e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMllqaqvsqnesgrssgsKGAQALSDEQIEELKAFYGLDKPML 80
Cdd:PRK10914 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIM-----------------AGERGISPERHAQLLAELGLDKPMW 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYAL 160
Cdd:PRK10914 64 QQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSM 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 161 PAYVVGIFLITVFAFHLEWLPMGGFPGD----DFEYMESSWDQIRTVF-----------AHALLPLIAYAIGDFAILTMT 225
Cdd:PRK10914 144 PIFWWGMMLIMLVSVHWNLTPVSGRVSDmvflDDSNPLTGFMLIDTAIwgedgnfidavAHMILPAIVLGTIPLAVIVRM 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 226 MKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDY 305
Cdd:PRK10914 224 TRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDY 303
|
330 340 350
....*....|....*....|....*....|...
gi 665860422 306 PTVMGILAITSMLMLIGNIVSDICVALVDPRVR 338
Cdd:PRK10914 304 PVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-340 |
2.59e-48 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 164.87 E-value: 2.59e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVERMLLQAQVSQnesgrssgskgaqalSDEQIEELKAFYGLDKPML 80
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSNLPP---------------TPEMLASTRTMLGLDQPLY 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYAL 160
Cdd:PRK10352 66 VQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSM 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 161 PAYVVGIFLITVFAFHLEWLPMGGFPGddfeymesswdqirtvFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVR 240
Cdd:PRK10352 146 PNFWLAFLLVMAFSVYLQWLPAMGYGG----------------WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVT 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 241 TAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLML 320
Cdd:PRK10352 210 WARLRGLSERQVERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFV 289
|
330 340
....*....|....*....|
gi 665860422 321 IGNIVSDICVALVDPRVRFG 340
Cdd:PRK10352 290 VCNLIVDLLNAALDPRIRRH 309
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-339 |
1.74e-44 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 154.49 E-value: 1.74e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVErmlLQAqvsqnesgrssgskGAQAlsDEQIEEL-KAFYGLDKPM 79
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPAR---LAA--------------GPEA--DAQVVALvRQQLGLDQPL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 80 LVAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYA 159
Cdd:PRK15081 62 PHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGIS 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 160 LPAYVVGIFLITVFAFHLEWLPMGGfpgddfeymESSWDqirtvfaHALLPLIAYAIGDFAILTMTMKNSLMENLSADYV 239
Cdd:PRK15081 142 FPAFALGMLLMQVFSVELGWLPTVG---------ADSWQ-------HYILPSLTLGAAVAAVMARFTRASFVEVLSEDYM 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 240 RTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDYPTVMGILAITSMLM 319
Cdd:PRK15081 206 RTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEF 285
|
330 340
....*....|....*....|
gi 665860422 320 LIGNIVSDICVALVDPRVRF 339
Cdd:PRK15081 286 ILINLVVDVLYAAINPAIRY 305
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
1-335 |
1.06e-24 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 102.07 E-value: 1.06e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVErmllqaqvsqnesgrssgskGAqALSDeqieelkafygldkpml 80
Cdd:PRK15110 1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQ--------------------GA-SLWD----------------- 42
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 vAYWEWLQKLAVLDLGESTRYYEPVWDLIKERLPVTAFFGLATFLLSYAVSIPLGVAKALRHNSRFDSLSSMLIYMAYAL 160
Cdd:PRK15110 43 -AWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSI 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 161 PAYVVGIFLITVFAFHLEWLPMG-------------GFPGDDFEYMESSW--DQIRTVFAHALLPLIAYAIGDFAILTMT 225
Cdd:PRK15110 122 PVFWLALLLTLFFSLTLGWLPVSgrfdllyevkpvtGFALIDAWLSDSPWrdEMIMSAIRHMILPVITLAVAPTTEVIRL 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 226 MKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNIDGIGLLGYEAIVERDY 305
Cdd:PRK15110 202 MRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDY 281
|
330 340 350
....*....|....*....|....*....|
gi 665860422 306 PTVMGILAITSMLMLIGNIVSDICVALVDP 335
Cdd:PRK15110 282 AAISAGVMVVGSLVIIVNVLSDILGAMANP 311
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
131-338 |
9.00e-22 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 90.82 E-value: 9.00e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 131 SIPLGVAKALRHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFafhlewlpmggfpgddfeymesswdqIRTVFAHALLP 210
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA--------------------------ILSILGHGILP 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 211 LIAYAIGDFAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSVLTVFFGGSFLIETIFNID 290
Cdd:pfam00528 55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 665860422 291 GIGLLGYEAIVERDYPTVMGILAITSMLMLIGNIVSDICVALVDPRVR 338
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
113-324 |
8.21e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 63.45 E-value: 8.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 113 LPVTAFFGLATFLLSYAVSIPLGVAkALRHNSRFDSLSSMLIYMAYALPAYVVGIFLITVFAFHLEWLpmggfpgddfey 192
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGII-LARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 193 messwdqirtVFAHALLPLIAYAIGDFAILTMTMKNSLMENLSADYVRTAVAKGLPFRKAVTDHAMRNSLIPIASHLGSV 272
Cdd:cd06261 68 ----------ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 665860422 273 LTVFFGGSFLIETIFNIDGIGL-LGYEAIVERDYPTVMGILAITSMLMLIGNI 324
Cdd:cd06261 138 FARALGEFALVSFLGGGEAPGPgTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-117 |
3.35e-06 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 45.29 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665860422 1 MLSYFLRRMLLIIPTFLGITLLVFTITRFVPGGPVeRMllqaqvsqnesgrSSGskgaQALSDEQIEELKAFYGLDKPML 80
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPA-RL-------------ACG----KNCTPETLALIRHNLGLDKPIP 62
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 665860422 81 VAYWEWLQKLaVLD-------------LGESTRYYEPVWDLIKERLPVTA 117
Cdd:pfam19300 63 VQYWHFLSGI-FAGrdfgavghcpapcLGYSFANNEPVWDTIMDRFPTTL 111
|
|
| |
