NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|659679205|ref|WP_029887158|]
View 

MULTISPECIES: putative signal transducing protein [Pseudomonas]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2007 super family cl09659
Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic ...
 1-63 8.23e-07

Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic signal transducing proteins of Pii-type.


The actual alignment was detected with superfamily member pfam09413:

Pssm-ID: 471910  Cd Length: 66  Bit Score: 42.21  E-value: 8.23e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659679205   1 MRRIYEPENLLEAEMLAGMLASEGIAVQVVGR---DLIGAVGELPMQgllgLAVADEQAEYARQLI 63
Cdd:pfam09413  1 MKELYRTNDPVLASMIKALLEEAGIPCVIKDEfmsILEGSLGELPVR----ILVAEDDLERARRIL 62
 
Name Accession Description Interval E-value
DUF2007 pfam09413
Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic ...
 1-63 8.23e-07

Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic signal transducing proteins of Pii-type.


Pssm-ID: 430595  Cd Length: 66  Bit Score: 42.21  E-value: 8.23e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659679205   1 MRRIYEPENLLEAEMLAGMLASEGIAVQVVGR---DLIGAVGELPMQgllgLAVADEQAEYARQLI 63
Cdd:pfam09413  1 MKELYRTNDPVLASMIKALLEEAGIPCVIKDEfmsILEGSLGELPVR----ILVAEDDLERARRIL 62
 
Name Accession Description Interval E-value
DUF2007 pfam09413
Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic ...
 1-63 8.23e-07

Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic signal transducing proteins of Pii-type.


Pssm-ID: 430595  Cd Length: 66  Bit Score: 42.21  E-value: 8.23e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 659679205   1 MRRIYEPENLLEAEMLAGMLASEGIAVQVVGR---DLIGAVGELPMQgllgLAVADEQAEYARQLI 63
Cdd:pfam09413  1 MKELYRTNDPVLASMIKALLEEAGIPCVIKDEfmsILEGSLGELPVR----ILVAEDDLERARRIL 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH