|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 519.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 1 MSQVTQNKVVAAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQDGGSLTHL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 161 IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
9.79e-109 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 316.67 E-value: 9.79e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 15 PMTPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPawqdggSLTHLLGTDDVGRDVLSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 95 MYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 658549650 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-295 |
1.57e-70 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 218.79 E-value: 1.57e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 32 AVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQdggsltHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVL 111
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSME------YWLGTDHLGRCIFSRLIFGARVSLGSALLVLGL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 112 SLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRD 191
Cdd:TIGR02790 75 VLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQRE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 192 YVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTF 271
Cdd:TIGR02790 155 FVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIY 234
|
250 260
....*....|....*....|....
gi 658549650 272 PGLAILLTVLAFNLMGDGLRDALD 295
Cdd:TIGR02790 235 PGLAILISVMAFNLLGDALRDHLG 258
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
17-69 |
2.35e-15 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 68.98 E-value: 2.35e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 658549650 17 TPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPP 69
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-280 |
1.16e-13 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.07 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 114 IMGVVLGLVAGYFGGIVDNIIMRIVDIMLA--------LPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 186 VEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLsdVLQFAQSA 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLL--IFAILFPG 173
|
170
....*....|....*
gi 658549650 266 WWVVTFPGLAILLTV 280
Cdd:cd06261 174 DLGVAAAVALILLLL 188
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
1-300 |
0e+00 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 519.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 1 MSQVTQNKVVAAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQDGGSLTHL 80
Cdd:PRK10913 1 MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAHI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPS 160
Cdd:PRK10913 81 LGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 161 IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFL 240
Cdd:PRK10913 161 IVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK10913 241 GMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
15-295 |
9.79e-109 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 316.67 E-value: 9.79e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 15 PMTPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPawqdggSLTHLLGTDDVGRDVLSRL 94
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPP------SAAHWLGTDQLGRDVLSRL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 95 MYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALP 174
Cdd:COG1173 75 LYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:COG1173 155 GYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTM 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 658549650 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:COG1173 235 LSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
17-299 |
3.58e-86 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 260.13 E-value: 3.58e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 17 TPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQDGGSLTHLLGTDDVGRDVLSRLMY 96
Cdd:COG4171 14 SPLKQIWQSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNGDVSFFLGTDDLGRDILSRLLY 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 97 GARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHY 176
Cdd:COG4171 94 GARYTFGSALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 177 VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS 256
Cdd:COG4171 174 IHAIYQAVHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLG 253
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 658549650 257 DVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:COG4171 254 DSLELIYLAPWTVILPGLAIMFSVLIVNLVGDGLRRALNKGVE 296
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-295 |
1.57e-70 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 218.79 E-value: 1.57e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 32 AVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQdggsltHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVL 111
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSME------YWLGTDHLGRCIFSRLIFGARVSLGSALLVLGL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 112 SLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRD 191
Cdd:TIGR02790 75 VLTIGLLIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQRE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 192 YVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTF 271
Cdd:TIGR02790 155 FVLAARTSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIY 234
|
250 260
....*....|....*....|....
gi 658549650 272 PGLAILLTVLAFNLMGDGLRDALD 295
Cdd:TIGR02790 235 PGLAILISVMAFNLLGDALRDHLG 258
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
12-298 |
2.30e-69 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 216.99 E-value: 2.30e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 12 APVPMTPLQEFWHYF----KRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPawqdggSLTHLLGTDDVG 87
Cdd:PRK09881 9 AVRPQKQTRFNGAKLvwmlKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPP------SAAHWFGTDEVG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 88 RDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALA 167
Cdd:PRK09881 83 RDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 168 LTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPP 247
Cdd:PRK09881 163 IAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQP 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 658549650 248 TPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKL 298
Cdd:PRK09881 243 SAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKA 293
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
17-300 |
2.61e-68 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 214.59 E-value: 2.61e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 17 TPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFR-DALLAPPawqdggSLTHLLGTDDVGRDVLSRLM 95
Cdd:PRK15082 23 TPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAENYFDyDALNAGP------SLQHWFGVDSLGRDIFSRIL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 96 YGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPH 175
Cdd:PRK15082 97 VGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 176 YVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTML 255
Cdd:PRK15082 177 FARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAML 256
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 658549650 256 SDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:PRK15082 257 NEARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPKIKG 301
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
15-295 |
2.05e-60 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 194.15 E-value: 2.05e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 15 PMTPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQDGGSLTHLLGTDDVGRDVLSRL 94
Cdd:PRK15111 12 PPGTLRTAWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 95 MYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALP 174
Cdd:PRK15111 92 LSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLP 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTM 254
Cdd:PRK15111 172 RMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAM 251
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 658549650 255 LSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALD 295
Cdd:PRK15111 252 LGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
27-299 |
2.86e-59 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 190.65 E-value: 2.86e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 27 KRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQdggsltHLLGTDDVGRDVLSRLMYGARLSLLVGC 106
Cdd:PRK10417 1 SSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQ------HWLGTDHLGRDIFSRLMAGTRVSLGSVM 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 107 LVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALAltfVALPH---YVRLTRAA 183
Cdd:PRK10417 75 ACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIA---IALSHwawYARMVRSL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 184 VLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQ 263
Cdd:PRK10417 152 VISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIW 231
|
250 260 270
....*....|....*....|....*....|....*.
gi 658549650 264 SAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLK 299
Cdd:PRK10417 232 TQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHLV 267
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
26-297 |
4.76e-39 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 139.20 E-value: 4.76e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 26 FKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPPAWQDGgsltHLLGTDDVGRDVLSRLMYGARLSLLVG 105
Cdd:PRK15406 33 FMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 106 CLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVL 185
Cdd:PRK15406 109 VAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 186 VEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
Cdd:PRK15406 189 SLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
|
250 260 270
....*....|....*....|....*....|..
gi 658549650 266 WWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
Cdd:PRK15406 269 PWLLLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
54-297 |
6.58e-39 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 139.52 E-value: 6.58e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 54 PYNPADQFRDALLAPPAwqdGGSLTHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNI 133
Cdd:COG4239 99 PYSYDTINYDLPSPAPS---PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 134 IMRIVDIMLALPSLLLALVLVAIFGPSIGNAALALTF---VALPHYVrltRAAVLVEVNRDYVTASRVAGAGAMRQMFVN 210
Cdd:COG4239 176 FQRFIEIWSSMPELYLLIILSSIFQPSFWLLLGILLLfgwMGLVGVV---RAEFLRARNLEYVRAARALGVSDRRIMFRH 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 211 IFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLS---DVLQfaqsAWWVV--TFPGLAILLTVLAFnl 285
Cdd:COG4239 253 ILPNAMVATLTFLPFILSGAITTLTSLDFLGFGLPPGSPSLGELLAqgkNNLQ----APWLGlsAFVVLALMLSLLVF-- 326
|
250
....*....|..
gi 658549650 286 MGDGLRDALDPK 297
Cdd:COG4239 327 IGEAVRDAFDPR 338
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
67-296 |
6.17e-20 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 88.50 E-value: 6.17e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 67 APPAWQDggslthLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMRIVDIMLALPS 146
Cdd:PRK15021 115 SPPSRQN------WLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPT 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 147 LLLALVLVAIFGPSIGnAALALTFV-ALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASL 225
Cdd:PRK15021 189 LFLIILLSSVVQPNFW-WLLAITVLfGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPF 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 658549650 226 GFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVT-FPGLAILLTVLAFnlMGDGLRDALDP 296
Cdd:PRK15021 268 ILCSSITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITaFLSVAILLSLLIF--IGEAVRDAFDP 337
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
17-69 |
2.35e-15 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 68.98 E-value: 2.35e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 658549650 17 TPLQEFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPADQFRDALLAPP 69
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
114-280 |
1.16e-13 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.07 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 114 IMGVVLGLVAGYFGGIVDNIIMRIVDIMLA--------LPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVL 185
Cdd:cd06261 17 VLGLLLGIILARKRGKLDRLLRRIIDLLLSlpslvlglLLVLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAAL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 186 VEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAqPPTPEWGTMLsdVLQFAQSA 265
Cdd:cd06261 97 ESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGPGTGLLL--IFAILFPG 173
|
170
....*....|....*
gi 658549650 266 WWVVTFPGLAILLTV 280
Cdd:cd06261 174 DLGVAAAVALILLLL 188
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
116-300 |
4.12e-13 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 66.55 E-value: 4.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 116 GVVLGLVAG-YFGGIVDNIIMRIVDIMLALPSLLLALVLVAIFGPSI----GNAALALTFVALPHYVRLTRAAVLVEVNR 190
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSIlghgILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549650 191 DYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFL----GMGAQPPTPEWGTMLSdvlqfaqsaw 266
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP---------- 150
|
170 180 190
....*....|....*....|....*....|....
gi 658549650 267 wVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ 300
Cdd:pfam00528 151 -EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
165-231 |
1.45e-05 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 45.83 E-value: 1.45e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 658549650 165 ALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAI 231
Cdd:COG0601 185 ALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVLGLQLGGLL 251
|
|
| cysT |
CHL00187 |
sulfate transport protein; Provisional |
165-231 |
3.64e-03 |
|
sulfate transport protein; Provisional
Pssm-ID: 214388 [Multi-domain] Cd Length: 237 Bit Score: 38.07 E-value: 3.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 658549650 165 ALALTFVALPHYVRlTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAI 231
Cdd:CHL00187 141 LLAMIFVSFPFVVR-TIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAI 206
|
|
| |
