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Conserved domains on  [gi|658549312|ref|WP_029741731|]
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MULTISPECIES: YciI family protein [Enterobacteriaceae]

Protein Classification

YciI family protein( domain architecture ID 10013785)

YciI family protein similar to Escherichia coli protein YciI

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11370 PRK11370
YciI family protein;
1-98 5.51e-71

YciI family protein;


:

Pssm-ID: 183103  Cd Length: 99  Bit Score: 205.97  E-value: 5.51e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSNDPGAAGFAGSTVIAEFESQESAQAWADADPY 80
Cdd:PRK11370  1 MLYVIYAQDVPNSLEKRLSVRPAHLARLQLLQDEGRLLTAGPMPAIDSNDPGEAGFTGSTVIAEFESLEAAQAWADADPY 80
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:PRK11370 81 VAAGVYARVIVKPFKKVL 98
 
Name Accession Description Interval E-value
PRK11370 PRK11370
YciI family protein;
1-98 5.51e-71

YciI family protein;


Pssm-ID: 183103  Cd Length: 99  Bit Score: 205.97  E-value: 5.51e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSNDPGAAGFAGSTVIAEFESQESAQAWADADPY 80
Cdd:PRK11370  1 MLYVIYAQDVPNSLEKRLSVRPAHLARLQLLQDEGRLLTAGPMPAIDSNDPGEAGFTGSTVIAEFESLEAAQAWADADPY 80
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:PRK11370 81 VAAGVYARVIVKPFKKVL 98
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
1-98 7.94e-36

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 116.85  E-value: 7.94e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSndpgaagfaGSTVIAEFESQESAQAWADADPY 80
Cdd:COG2350   1 MLFAVILTDKPDSLEERDALRPAHLAYLKELYEEGRLLAAGPLLDDDT---------GGLIIAEADSREEAEALAAADPY 71
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:COG2350  72 VKAGVVASVEVREWKPVL 89
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
2-95 2.19e-32

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 108.21  E-value: 2.19e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312   2 FYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSNDPGAAGFAGSTVIAEFESQESAQAWADADPYV 81
Cdd:pfam03795  1 LYAILAYDKPASLEERAALRAAHLAYLEQLKKEGVLLASGPTLVIDGPFAETKEQLGGFYIIEAADLDEAIAIAAGDPFV 80
                         90
                 ....*....|....
gi 658549312  82 AAGVYAKVTVRPYK 95
Cdd:pfam03795 81 AAGLYEERPVKEFK 94
 
Name Accession Description Interval E-value
PRK11370 PRK11370
YciI family protein;
1-98 5.51e-71

YciI family protein;


Pssm-ID: 183103  Cd Length: 99  Bit Score: 205.97  E-value: 5.51e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSNDPGAAGFAGSTVIAEFESQESAQAWADADPY 80
Cdd:PRK11370  1 MLYVIYAQDVPNSLEKRLSVRPAHLARLQLLQDEGRLLTAGPMPAIDSNDPGEAGFTGSTVIAEFESLEAAQAWADADPY 80
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:PRK11370 81 VAAGVYARVIVKPFKKVL 98
YciI COG2350
YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis ...
1-98 7.94e-36

YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 441917  Cd Length: 93  Bit Score: 116.85  E-value: 7.94e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSndpgaagfaGSTVIAEFESQESAQAWADADPY 80
Cdd:COG2350   1 MLFAVILTDKPDSLEERDALRPAHLAYLKELYEEGRLLAAGPLLDDDT---------GGLIIAEADSREEAEALAAADPY 71
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:COG2350  72 VKAGVVASVEVREWKPVL 89
PRK12863 PRK12863
YciI-like protein; Reviewed
1-98 1.29e-33

YciI-like protein; Reviewed


Pssm-ID: 183800  Cd Length: 94  Bit Score: 111.53  E-value: 1.29e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLqdEGRLLTAGPMPavdsnDPGAAGFAGSTVIAEFESQESAQAWADADPY 80
Cdd:PRK12863  1 MLFAILCTDKPGHLEVRLATRPAHLAYLETL--EGRLLAAGPLL-----DDDGKPMVGSLVVVEAESRAAAEAFAAADPF 73
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:PRK12863 74 AKAGLYESVDIKPFNKAF 91
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
2-95 2.19e-32

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 108.21  E-value: 2.19e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312   2 FYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMPAVDSNDPGAAGFAGSTVIAEFESQESAQAWADADPYV 81
Cdd:pfam03795  1 LYAILAYDKPASLEERAALRAAHLAYLEQLKKEGVLLASGPTLVIDGPFAETKEQLGGFYIIEAADLDEAIAIAAGDPFV 80
                         90
                 ....*....|....
gi 658549312  82 AAGVYAKVTVRPYK 95
Cdd:pfam03795 81 AAGLYEERPVKEFK 94
PRK12865 PRK12865
YciI-like protein; Reviewed
1-98 2.19e-16

YciI-like protein; Reviewed


Pssm-ID: 171782  Cd Length: 97  Bit Score: 67.94  E-value: 2.19e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMpavdSNDPGAAgfAGSTVIAEFESQESAQAWADADPY 80
Cdd:PRK12865  1 MLFALLCKDKPGHLNVRMDTRPTHLEYLNKLNAEGTLKIAGPF----LDDDGKP--CGSLVIVKAETKEAAKALADADPY 74
                        90
                ....*....|....*...
gi 658549312 81 VAAGVYAKVTVRPYKKVF 98
Cdd:PRK12865 75 AKAGLFESVEVKAYNWVF 92
PRK12866 PRK12866
YciI-like protein; Reviewed
1-97 9.37e-13

YciI-like protein; Reviewed


Pssm-ID: 237238  Cd Length: 97  Bit Score: 58.58  E-value: 9.37e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  1 MFYVIYSEDVADSLEKRQAVRPAHLARLQLLQDEGRLLTAGPMpaVDSNDPGAAGFAGstviaefESQESAQAWADADPY 80
Cdd:PRK12866  1 MHYLLTYDLVDDYLERREAYRAEHLALAQAATERGELLLAGAL--ADPADGAVLVFEG-------DSPAAAEAFARADPY 71
                        90
                ....*....|....*..
gi 658549312 81 VAAGVYAKVTVRPYKKV 97
Cdd:PRK12866 72 VRNGLVKSWRVRPWTVV 88
PRK12864 PRK12864
YciI-like protein; Reviewed
6-98 6.46e-11

YciI-like protein; Reviewed


Pssm-ID: 183801  Cd Length: 89  Bit Score: 53.42  E-value: 6.46e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658549312  6 YSEDVadsLEKRQAVRPAHLARLQLLQDEGRLLTAGPMpavdsndpgaagfAGSTV---IAEFESQESAQAWADADPYVA 82
Cdd:PRK12864 10 YCEDA---LEKRAPFREAHLDRLAKLKEQGILITLGPT-------------KDLTYvfgIFEAEDEETVRQLIEADPYWQ 73
                        90
                ....*....|....*.
gi 658549312 83 AGVYAKVTVRPYKKVF 98
Cdd:PRK12864 74 NGIWTEYEVYPWIQAF 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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