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Conserved domains on  [gi|658548026|ref|WP_029740504|]
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MULTISPECIES: carbohydrate ABC transporter permease [Enterobacter]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
28-288 2.98e-76

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 234.64  E-value: 2.98e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  28 LVAWPMISNIEISFLRLPLNpRIDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNREFRLRKT 107
Cdd:COG1175   34 FVLYPLLYTLYLSFTDWNLL-GPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGF 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 108 ARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLgVDLLHLydQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQ 187
Cdd:COG1175  113 FRTLFFLPWVISPVVVALIWKWLFNPDYGLLNAL-LGALGL--EPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQ 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 188 TIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT-----TKVDILGVYLYKTAFAFNDL 262
Cdd:COG1175  190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggpgNSTTTLVLYIYQTAFQQFDF 269

                        250       260
                 ....*....|....*....|....*.
gi 658548026 263 GKAAAISVVLFVIIFAVILLTRKRVN 288
Cdd:COG1175  270 GYASAIAVVLFLIILVLTLLQLRLLR 295
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
28-288 2.98e-76

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 234.64  E-value: 2.98e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  28 LVAWPMISNIEISFLRLPLNpRIDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNREFRLRKT 107
Cdd:COG1175   34 FVLYPLLYTLYLSFTDWNLL-GPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGF 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 108 ARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLgVDLLHLydQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQ 187
Cdd:COG1175  113 FRTLFFLPWVISPVVVALIWKWLFNPDYGLLNAL-LGALGL--EPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQ 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 188 TIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT-----TKVDILGVYLYKTAFAFNDL 262
Cdd:COG1175  190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggpgNSTTTLVLYIYQTAFQQFDF 269

                        250       260
                 ....*....|....*....|....*.
gi 658548026 263 GKAAAISVVLFVIIFAVILLTRKRVN 288
Cdd:COG1175  270 GYASAIAVVLFLIILVLTLLQLRLLR 295
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
50-283 2.52e-23

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 96.43  E-value: 2.52e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  50 IDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVvigsTGLGLAVAIFF----NREFRLRKTARSLVILSY-VTPSISLV 124
Cdd:PRK10561  34 FSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLV----TVSGLLVSLFFaalvDYVVRGSRFYQTLMLLPYaVAPAVAAV 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 125 FaWKYMFNNGYGIVNYLGVDLLHLYDQAplwfDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANA 204
Cdd:PRK10561 110 L-WIFLFNPGRGLITHFLAEFGYDWNHA----QNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGP 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 205 WQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTT------KVDILGVYLYKTAFAFNDLGKAAAISVVLfviIFA 278
Cdd:PRK10561 185 IRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATsggpvqATTTLIYKIYREGFTGLDLSSSAAQSVVL---MFL 261


                 ....*
gi 658548026 279 VILLT 283
Cdd:PRK10561 262 VIVLT 266
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 73-277 5.69e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 74.24  E-value: 5.69e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  73 LWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGivnylgvdllhlydq 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 152 aplWFDNPGSSFVLVVLFAIWrYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWM 231
Cdd:cd06261   66 ---WGILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARA 141

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 658548026 232 FYMFADVYLLTTKVD---ILGVYLYKTAFAFNDLGKAAAISVVLFVIIF 277
Cdd:cd06261  142 LGEFALVSFLGGGEApgpGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 51-286 1.19e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.78  E-value: 1.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026   51 DAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNRE-FRLRKTARSLVILSYVTPSISLVFAWKY 129
Cdd:TIGR03262  34 DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  130 MFNNGyGIVNylgvdllhlydqaPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFR 209
Cdd:TIGR03262 114 LFGNQ-GLLK-------------GLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFF 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  210 IVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLF---VIIFAVILLTRKR 286
Cdd:TIGR03262 180 TVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLlpaLLAFGIDRAIQRR 259
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 89-281 9.15e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.92  E-value: 9.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026   89 GLGLAVAIFFNREFRLRKTARSLVILSYVTPSISLVFAWKYMFnngygivnylgvdllhlydqaplWFDNPGSSFVLVVL 168
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA-----------------------ILSILGHGILPAII 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  169 FAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDiL 248
Cdd:pfam00528  58 LALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG-L 136

                         170       180       190
                  ....*....|....*....|....*....|....
gi 658548026  249 GVYLYKTAFAFN-DLGKAAAISVVLFVIIFAVIL 281
Cdd:pfam00528 137 GLLLIEAILGYDyPEIQGPVLAAALILLLLNLLV 170
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
28-288 2.98e-76

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 234.64  E-value: 2.98e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  28 LVAWPMISNIEISFLRLPLNpRIDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNREFRLRKT 107
Cdd:COG1175   34 FVLYPLLYTLYLSFTDWNLL-GPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRGF 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 108 ARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLgVDLLHLydQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQ 187
Cdd:COG1175  113 FRTLFFLPWVISPVVVALIWKWLFNPDYGLLNAL-LGALGL--EPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQ 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 188 TIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLT-----TKVDILGVYLYKTAFAFNDL 262
Cdd:COG1175  190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTgggpgNSTTTLVLYIYQTAFQQFDF 269

                        250       260
                 ....*....|....*....|....*.
gi 658548026 263 GKAAAISVVLFVIIFAVILLTRKRVN 288
Cdd:COG1175  270 GYASAIAVVLFLIILVLTLLQLRLLR 295
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
50-284 1.39e-33

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 128.35  E-value: 1.39e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  50 IDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLVFAWK 128
Cdd:COG1178   33 LRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARtDFPGRRLLRWLLLLPLALPPYVVALAWI 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 129 YMFNNGyGIVNYLGVDLLHLydqaplWFDNPGSSFVLVVLFAIWrYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRF 208
Cdd:COG1178  113 ALFGPN-GLLNTLLRALFGL------EPPDIYGLGGIILVLVLF-NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAF 184

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 658548026 209 RIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFVIIFAVILLTR 284
Cdd:COG1178  185 RRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLER 260
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 26-289 7.22e-31

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 116.79  E-value: 7.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  26 GGLVAWPMISNIEISFLRLPLNPRIDAVFvGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRL 104
Cdd:COG1176   23 LLFFVLPLLLLLVYSFTTRDPYGGVVPGF-TLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARaPPRW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 105 RKTARSLVILSYVTPSISLVFAWKYMFNNGyGIVNYLGVdLLHLYDQAPLWFDNPGSsfvlVVLFAIWRYFPYAFISFLA 184
Cdd:COG1176  102 RNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLL-ALGLIDEPLRLLYTEFA----VVIGLVYVYLPFMVLPLYA 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 185 ILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLL-TTKVDILGVYLYKTAFAFNDLG 263
Cdd:COG1176  176 ALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLgGGKVLMIGNLIYQQFLSALNWP 255

                        250       260
                 ....*....|....*....|....*.
gi 658548026 264 KAAAISVVLFVIIFAVILLTRKRVNL 289
Cdd:COG1176  256 LAAALAVVLLLIVLLVLLLYLRLLRR 281
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 54-285 1.38e-30

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 116.73  E-value: 1.38e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  54 FVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFN--REFRLRKTARSLVIL----SYVTpSISLVFAw 127
Cdd:COG4209   69 WVGLKNFKFLFSSPDFWRVLRNTLLISLLKLVFGFPLPIILALLLNelRSKRFKKTVQTISYLphflSWVV-VAGIVYQ- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 128 kyMFNNGYGIVNYLgvdLLHLYDQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQR 207
Cdd:COG4209  147 --FLSPDTGLVNQL---LRALGGEPINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQ 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 208 FRIVTLPAIMPVLATVVTLRTIWMFYM-FADVYLLTTKV-----DILGVYLYKTAFAFNDLGKAAAI----SVVLFVIIF 277
Cdd:COG4209  222 IWHITLPGIRPTIVILLILNIGNILNVgFEQIYLLYNPLnystsDVIDTYVYRIGLQNGDYSYATAVglfkSVVGLILVL 301


                 ....*...
gi 658548026 278 AVILLTRK 285
Cdd:COG4209  302 IANKIAKK 309
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
50-283 2.52e-23

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 96.43  E-value: 2.52e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  50 IDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVvigsTGLGLAVAIFF----NREFRLRKTARSLVILSY-VTPSISLV 124
Cdd:PRK10561  34 FSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLV----TVSGLLVSLFFaalvDYVVRGSRFYQTLMLLPYaVAPAVAAV 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 125 FaWKYMFNNGYGIVNYLGVDLLHLYDQAplwfDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANA 204
Cdd:PRK10561 110 L-WIFLFNPGRGLITHFLAEFGYDWNHA----QNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGP 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 205 WQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTT------KVDILGVYLYKTAFAFNDLGKAAAISVVLfviIFA 278
Cdd:PRK10561 185 IRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATsggpvqATTTLIYKIYREGFTGLDLSSSAAQSVVL---MFL 261


                 ....*
gi 658548026 279 VILLT 283
Cdd:PRK10561 262 VIVLT 266
malF PRK10999
maltose ABC transporter permease MalF;
53-285 5.95e-22

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 95.41  E-value: 5.95e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  53 VFVGLDNYIRILGD--------AAFwhsLWmTFWYTALVVIGSTGLGLAVAIFFNRE-FRLRKTARSLVILSYVTPS-IS 122
Cdd:PRK10999 263 VTIGWKNFTRVFTDegiqkpfiAIF---IW-TVVFSLLTVVLTVAVGMVLACLVQWEaLKGKAVYRVLLILPYAVPSfIS 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 123 -LVFawKYMFNNGYGIVNYLgvdLLHLYDQAPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDG 201
Cdd:PRK10999 339 iLIF--KGLFNQSFGEINMM---LSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDG 413

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 202 ANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTT-------------KVDILGVYLYKTAF---AFNDLGKA 265
Cdd:PRK10999 414 AGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpdmigtttpagYTDLLVSYTYRIAFeggGGQDFGLA 493

                        250       260
                 ....*....|....*....|
gi 658548026 266 AAISVVLFVIIFAVILLTRK 285
Cdd:PRK10999 494 AAIATLIFLLVGALAILNLK 513
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
57-282 1.43e-19

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 88.29  E-value: 1.43e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  57 LDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGY 135
Cdd:COG1178  324 LDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRrRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPL 403

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 136 GIVNYlgvdllhlydqaplwfdnpGSSFVLVVLFAIwRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPA 215
Cdd:COG1178  404 PLLLY-------------------GTLAILVLAYVV-RFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPL 463

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 658548026 216 IMPVLATVvtlrtiwMFYMFAD--------VYLLTTKVDILGVYLYkTAFAFNDLGKAAAISVVLFVIIFAVILL 282
Cdd:COG1178  464 LRPGLLAA-------ALLVFVTsmkelsatLLLRPPGFETLAVLIY-QLASSGRYGEAAALALLLVLVSLLPVLL 530
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 57-282 1.86e-18

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 82.85  E-value: 1.86e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  57 LDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLvfawkymfnngy 135
Cdd:COG1177   47 LRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARyRFRGRRLLLALLLLPLVVPGIVL------------ 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 136 givnylGVDLLHLYDQAPLwfdnpGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPA 215
Cdd:COG1177  115 ------GVALLLLFSALGL-----SGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPL 183

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 658548026 216 IMPVLATVVTLRTIWMFYMFADVYLLTT-KVDILGVYLYkTAFAFNDLGKAAAISVVLFVIIFAVILL 282
Cdd:COG1177  184 IAPGILAGALLAFTLSFDEFVITLFLAGpGVTTLPVYIY-SMIRRGISPEINALSTLLILLSLLLLLL 250
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 73-277 5.69e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 74.24  E-value: 5.69e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  73 LWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGivnylgvdllhlydq 151
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 152 aplWFDNPGSSFVLVVLFAIWrYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWM 231
Cdd:cd06261   66 ---WGILPGLGLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARA 141

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 658548026 232 FYMFADVYLLTTKVD---ILGVYLYKTAFAFNDLGKAAAISVVLFVIIF 277
Cdd:cd06261  142 LGEFALVSFLGGGEApgpGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 57-286 2.43e-15

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 74.36  E-value: 2.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  57 LDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLVfawkymfnngy 135
Cdd:COG0395   60 LENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARfRFRGRKLLFLLILATLMIPGQVLL----------- 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 136 gIVNYLGVDLLHLYDqaplwfdnpgsSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPA 215
Cdd:COG0395  129 -IPLYLLFRQLGLLN-----------TYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPL 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 658548026 216 IMPVLATVVTLRTIWMF--YMFADVYLLTTKVDILGVYLYKTAFAFN-DLGKAAAISVVLFVIIFAVILLTRKR 286
Cdd:COG0395  197 SKPALATVAIFTFIGAWndFLWPLILLTSPDLRTLPVGLASFQGQYGtDWGLLMAAAVIATLPVLILFLFLQRY 270
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 50-284 5.28e-14

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 70.16  E-value: 5.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  50 IDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTARSLVILSYVTP------SIS 122
Cdd:COG0555   33 LKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRyRFPGKRLVDALVDLPFALPtavagiALL 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 123 LVFAWKYMFNngyGIVNYLGVDLLhlydqaplwFDNPGssfVLVVLFAIwrYFPYAFISFLAILQTIDKSLYEAAEMDGA 202
Cdd:COG0555  113 LLFGPNGWLG---QLLAPLGIKVA---------FTPLG---IVLAQTFV--SLPFVVRTVQPVLEELDPELEEAAATLGA 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 203 NAWQRFRIVTLPAIMPVLATVVTL---RTIWMF---YMFAdvYLLTTKVDILGVYLYkTAFAFNDLGKAAAISVVLFVII 276
Cdd:COG0555  176 SRWQTFRRVILPLLLPALLTGFALafaRALGEFgavIFIA--GNLPMKTEILPLLIY-LKLEEGDYAGATAIALVLLLIS 252


                 ....*...
gi 658548026 277 FAVILLTR 284
Cdd:COG0555  253 FLLLLLIN 260
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 51-286 1.19e-12

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 67.78  E-value: 1.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026   51 DAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNRE-FRLRKTARSLVILSYVTPSISLVFAWKY 129
Cdd:TIGR03262  34 DGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSrIPGKGAFRLVALLPLLAPSLLPAISLIY 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  130 MFNNGyGIVNylgvdllhlydqaPLWFDNPGSSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFR 209
Cdd:TIGR03262 114 LFGNQ-GLLK-------------GLLGGFSIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFF 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  210 IVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLF---VIIFAVILLTRKR 286
Cdd:TIGR03262 180 TVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVGVLLLlpaLLAFGIDRAIQRR 259
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 89-281 9.15e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.92  E-value: 9.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026   89 GLGLAVAIFFNREFRLRKTARSLVILSYVTPSISLVFAWKYMFnngygivnylgvdllhlydqaplWFDNPGSSFVLVVL 168
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA-----------------------ILSILGHGILPAII 57

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  169 FAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTKVDiL 248
Cdd:pfam00528  58 LALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG-L 136

                         170       180       190
                  ....*....|....*....|....*....|....
gi 658548026  249 GVYLYKTAFAFN-DLGKAAAISVVLFVIIFAVIL 281
Cdd:pfam00528 137 GLLLIEAILGYDyPEIQGPVLAAALILLLLNLLV 170
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 57-253 5.86e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 52.85  E-value: 5.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  57 LDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNR-EFRLRKTA-RSLVILSYVtPSISLVFAWKYMFNNG 134
Cdd:COG3833   59 LENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRfRFKGRKAGlLALLLLQMF-PAFLALVALYLLLSAL 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 135 YGIVNYLGVDLLHLYDQAPlwfdnpgssfvlvvlFAIWR---YFpyafisflailQTIDKSLYEAAEMDGANAWQRFRIV 211
Cdd:COG3833  138 GLLNTLLGLILVYLGGAIP---------------FNTWLmkgYF-----------DTIPKELDEAAKIDGASHFQIFFRI 191

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 658548026 212 TLPAIMPVLATV--VTLRTIWMFYMFADVYLLTTKVDILGVYLY 253
Cdd:COG3833  192 ILPLAKPILAVValLSFIGPWNDFILASVLLRSPENYTLAVGLY 235
malG PRK10998
maltose ABC transporter permease MalG;
187-277 7.24e-08

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 52.79  E-value: 7.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 187 QTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMF--YMFADVYLLTTKVDILGV----YLYKTAFAFN 260
Cdd:PRK10998 182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAIteVPVASLLLRDVNSYTLAVgmqqYLNPQNYLWG 261

                         90
                 ....*....|....*..
gi 658548026 261 DLGKAAAISVVLFVIIF 277
Cdd:PRK10998 262 DFAAAAVLSAIPITVVF 278
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 61-222 1.58e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 48.22  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  61 IRILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVAIFFNREFRLRKTARSLVILSYVTPSISLVFawkymfnngygivny 140
Cdd:COG0600   51 VELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAP--------------- 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 141 LGVdllhlydqapLWF-DNPGSSFVLVVLFAiwryFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPV 219
Cdd:COG0600  116 LLI----------LWFgIGEASKIFVIFLGA----FFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPY 181


                 ...
gi 658548026 220 LAT 222
Cdd:COG0600  182 IFT 184
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 26-284 2.22e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 48.08  E-value: 2.22e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  26 GGLVAWPMISNIEISFLrlplnpriDAVFVGLDNYIRILGDAAFWHSLWMTFWYTALVVIGSTGLG--LAVAIFFnREFR 103
Cdd:PRK15050  36 APLVVYPLVRVVLQSLT--------GEHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVLGvlLALVLAF-VPFP 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 104 LRKTARSLVILSYVTPSISLVFAWKYMFNNGyGIVNYLGVDLLHLyDQAPLWFDN-PGSsfvlVVLFAIWRYFPYAFISF 182
Cdd:PRK15050 107 GASLVGRFIDTFVAFPSFLITLAFTFLYGSA-GSVNIALQRLFGL-EAPPLDFLYsPGG----VILAEITFYTPFVVRPL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 183 LAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTLRTIWMFYMFADVYLLTTK-VDILGVYLYKTAFAFND 261
Cdd:PRK15050 181 LAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKdVVTLPVLIYSKAIVDFD 260

                        250       260
                 ....*....|....*....|...
gi 658548026 262 LGKAAAISVVLFVIIFAVILLTR 284
Cdd:PRK15050 261 YPTACAIAVVNLALSLGLYALYR 283
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 63-285 4.50e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 41.36  E-value: 4.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  63 ILGDAAFWHSLWMTFWYTALVVIGSTGLGLAVA-IFFNREFRLRKTARSLVILSYVTPSISLVFawkymfnngyGIVNYL 141
Cdd:PRK09433  36 VWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLArALYRRRFPGRGLLLRLCAMTLVLPVLVAVF----------GLLSVY 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 142 G-----VDLLHLYDqAPLWFDNPGSSFVLV--VLFAIwryfPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLP 214
Cdd:PRK09433 106 GrsgwlAQLLQALG-LEWPFSIYGLQGILLahVFFNL----PLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWP 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 215 AIMPVLATVVTLrtIWM--FYMFADVYLL------TTkvdiLGVYLYKtAFAFN-DLGKAAAISVVLFVIIFAVILLTRK 285
Cdd:PRK09433 181 YLRRQLPPVAAL--IFMlcFTSFATVLTLgggpkaTT----IELAIYQ-ALSFDfDLARAALLALLQMVLCLGLVLLSQR 253
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 57-293 7.44e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 40.44  E-value: 7.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  57 LDNYIRILGD---AAFWHSLWMTFWYTALVVIgstgLGLAVAIFFNR-EFRLRKTARSLVILSYVTPSISLVFAWKyMFN 132
Cdd:PRK09497  50 LDNYTRLLDPlyaEVLLHSLNMALIATLACLV----LGYPFAWFLAKlPHKVRPLLLFLLIVPFWTNSLIRIYGLK-IFL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 133 NGYGIVN--YLGVDLLhlydQAPLWFDNpgsSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRI 210
Cdd:PRK09497 125 STKGYLNefLLWLGVI----DTPIRIMF---TESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIR 197

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026 211 VTLPAIMPVLAT---VVTLRTIWMFYMfADVyLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLfVIIFAVILLTRKRV 287
Cdd:PRK09497 198 IIIPLTMPGIIAgclLVLLPAMGMFYV-SDL-LGGAKNLLIGNVIKSQFLNIRDWPFGAATSITL-TIVMGLMLLVYYRA 274


                 ....*.
gi 658548026 288 NLNGNK 293
Cdd:PRK09497 275 SKLLNK 280
cysT CHL00187
sulfate transport protein; Provisional
 162-226 1.00e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 39.61  E-value: 1.00e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 658548026 162 SFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLATVVTL 226
Cdd:CHL00187 136 TKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLAL 200
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 68-221 9.22e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 36.89  E-value: 9.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 658548026  68 AFWHSLWM-TFWYTALVVIGSTGlglAVAIFFNReFRLRKTARSLVILSYVTPSISLVFAWKYMFNngygivnYLGVDLl 146
Cdd:PRK09500  58 AAQHSLTMaVFSATFATLIGSLT---AVALYRYR-FRGKKFVSGMLFVVMMSPDIVMAISLLVLFM-------LLGIQL- 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 658548026 147 hlydqaplwfdnpgsSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMPVLA 221
Cdd:PRK09500 126 ---------------GFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVA 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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