|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
1-1199 |
2.43e-99 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 340.62 E-value: 2.43e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1 MKILAIRLKNLASLAGEQEIDFTREPLSSAGLFAITGPTGAGKSTVLDALCLALFGSTPRLESTSASskvpdgrnelssn 80
Cdd:PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQS------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 81 dERNLLRRGCASGYAEVDFvGIDGHRYRARWETRRSRDKADGALQKSQQSLQDLDTQQMLaANKKSEFREQLEQKLGLNF 160
Cdd:PRK10246 68 -QNDLMTRDTAECLAEVEF-EVKGEAYRAFWSQNRARNQPDGNLQAPRVELARCADGKIL-ADKVKDKLELTATLTGLDY 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 161 AQFTRAVLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAA 240
Cdd:PRK10246 145 GRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTAS 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 241 LESHAQARLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQAWDALATERETLQWLERLAPVRGLIERLKQLEQ 320
Cdd:PRK10246 225 LQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSA 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 321 ELRHSEqqqrqrteqqaagaERLQGLQARVQEARERQAqaddhlRQAQAPLREAFQLESEARRLERTLAERqelhrqsnq 400
Cdd:PRK10246 305 ALAHTR--------------QQIEEVNTRLQSTMALRA------RIRHHAAKQSAELQAQQQSLNTWLAEH--------- 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 401 rhaqqsDAARQLDMEQQRHVAEQAQLQaalRDSQALAALgdawathQGQLAAFVQRRqralesqAQLPELEKSLAqagep 480
Cdd:PRK10246 356 ------DRFRQWNNELAGWRAQFSQQT---SDREQLRQW-------QQQLTHAEQKL-------NALPAITLTLT----- 407
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 481 lerlqaqwaalhgsePDDLAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQAlLDLKRQgsq 560
Cdd:PRK10246 408 ---------------ADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAA-LNEMRQ--- 468
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 561 caeQVKAAEQALQVTRELLQRQrlARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLLaalgEHDDQEQVRAeqALER 640
Cdd:PRK10246 469 ---RYKEKTQQLADVKTICEQE--ARIKDLEAQRAQLQAGQPCPLCGSTSHPAVEAYQAL----EPGVNQSRLD--ALEK 537
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 641 LRQTLvglregyssqrerlnqsRQEQQELTGQLAALDRQLEQWTlPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFD 720
Cdd:PRK10246 538 EVKKL-----------------GEEGAALRGQLDALTKQLQRDE-SEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQ 599
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 721 RLIARQrqtqqlqqelraaetilQQRQQALTEQRQRYEhLQQQVEEDSQQLRPLlsDEHWQRWQADPLRTFQALGESieq 800
Cdd:PRK10246 600 PWLDAQ-----------------EEHERQLRLLSQRHE-LQGQIAAHNQQIIQY--QQQIEQRQQQLLTALAGYALT--- 656
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 801 rrqqqarlqqveqrlqeLKQRCDESSWQlkqsDEQRNEARQAEERvQAELAELNGRLGAhlgqhacaqdWQLSLEHAAQA 880
Cdd:PRK10246 657 -----------------LPQEDEEASWL----ATRQQEAQSWQQR-QNELTALQNRIQQ----------LTPLLETLPQS 704
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 881 AQSAVETLQAPLDSLRE---EQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLgLSEEQATQWR 957
Cdd:PRK10246 705 DDLPHSEETVALDNWRQvheQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAAL-LDEETLTQLE 783
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 958 EQLQRLQEEITRQQTLEAERQAQLLQHRRQRPE-----TDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQ 1032
Cdd:PRK10246 784 QLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDgldltVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQ 863
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1033 ALLAELERARAEFRRWGRLNELIGSSSGDKFRRIAQGYNLDLLVQHSNVQLRQLARRYRLQRGGSE-LGLLVVDTEMGDE 1111
Cdd:PRK10246 864 ALMQQIAQATQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVWLANQQLTRLHGRYLLQRKASEaLELEVVDTWQADA 943
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1112 LRSVYSLSGGETFLISLALALGLASMASSKLRIESLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISHVQEMHERI 1191
Cdd:PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023
|
....*...
gi 657908800 1192 PVQVRVQR 1199
Cdd:PRK10246 1024 PVQIKVKK 1031
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1-1203 |
1.25e-57 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 217.53 E-value: 1.25e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1 MKILAIRLKNLASLAGEQEIDFTREPlssaGLFAITGPTGAGKSTVLDALCLALFGSTPRLESTSASskvpdgrnelssn 80
Cdd:TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALG----PIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRS------------- 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 81 dERNLLRRGCASGYAEVDFVgIDGHRYRARWETRRSRDKADGALQKSQQSLQDlDTQQMLAANKKSEFREQLEQKLGLNF 160
Cdd:TIGR00618 64 -LNSLYAAPSEAAFAELEFS-LGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQK-KGRGRILAAKKSETEEVIHDLLKLDY 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 161 AQFTRAVLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAA 240
Cdd:TIGR00618 141 KTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHER 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 241 LESHAQARLQEQQALQRLEGQQQWFTEEQRLLQscehaqgqlaearqawdalaterETLQWLERLAPVRGLIERLKQLEQ 320
Cdd:TIGR00618 221 KQVLEKELKHLREALQQTQQSHAYLTQKREAQE-----------------------EQLKKQQLLKQLRARIEELRAQEA 277
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 321 ELrhseqqqrqrteqqaagaerlqglqARVQEARERQAQADDHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQ 400
Cdd:TIGR00618 278 VL-------------------------EETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAA 332
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 401 RHAQQSDAARQLDMEQQRHVAEQAQLQAAlrDSQALaalgdaWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEP 480
Cdd:TIGR00618 333 HVKQQSSIEEQRRLLQTLHSQEIHIRDAH--EVATS------IREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDI 404
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 481 LERLQAQWAALHGSEPDdlaarldelrrqtdslERQQALHKEWQQALDQRtglarRLGELDQRMVEQEQALLDLKRQGSQ 560
Cdd:TIGR00618 405 LQREQATIDTRTSAFRD----------------LQGQLAHAKKQQELQQR-----YAELCAAAITCTAQCEKLEKIHLQE 463
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 561 CAEQVKAAEQALQVTRELLQRQrlARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLL-----AALGEHDDQEQVRAE 635
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQE--TRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpgplTRRMQRGEQTYAQLE 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 636 QALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQC 715
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKL 621
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 716 QRDFDRLiarqrqtqqlqQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPlrtfQALG 795
Cdd:TIGR00618 622 QPEQDLQ-----------DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLAL----QKMQ 686
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 796 ESIEQRRQQQARLQQVEQRLQELKQRcdesswqLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSle 875
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQTLLRELETH-------IEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLK-- 757
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 876 haAQAAQSAVETLQAPLDSLREEQLrlaealehlqqqrqrqqdefqrlqadwqawrerqdnlddsrldallglseEQATQ 955
Cdd:TIGR00618 758 --ARTEAHFNNNEEVTAALQTGAEL--------------------------------------------------SHLAA 785
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 956 WREQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALL 1035
Cdd:TIGR00618 786 EIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT 865
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1036 AELERARAEFRRWGRLNELIGSSSGDKFRRIAQGYNLDLLVQHSNVQLRQLARRYRLQR---GGSELGLLVVDTEMGDEL 1112
Cdd:TIGR00618 866 QEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANVRLANQSEGRFHGRYADSHvnaRKYQGLALLVADAYTGSV 945
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1113 RSVYSLSGGETFLISLALALGLASMAS--SKLRIESLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISHVQEMHER 1190
Cdd:TIGR00618 946 RPSATLSGGETFLASLSLALALADLLStsGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025
|
1210
....*....|...
gi 657908800 1191 IPVQVRVQREGNG 1203
Cdd:TIGR00618 1026 IPHRILVKKTNAG 1038
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
1113-1203 |
7.83e-32 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 123.92 E-value: 7.83e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1113 RSVYSLSGGETFLISLALALGLASMASSKL--RIESLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISHVQEMHER 1190
Cdd:cd03279 119 RPVSTLSGGETFLASLSLALALSEVLQNRGgaRLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKER 198
|
90
....*....|...
gi 657908800 1191 IPVQVRVQREGNG 1203
Cdd:cd03279 199 IPQRLEVIKTPGG 211
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
6-222 |
2.18e-26 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 107.58 E-value: 2.18e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 6 IRLKNLASLaGEQEIDFtreplsSAGLFAITGPTGAGKSTVLDALCLALFGSTPRLestsasskvPDGRNELSSNDERNL 85
Cdd:pfam13476 1 LTIENFRSF-RDQTIDF------SKGLTLITGPNGSGKTTILDAIKLALYGKTSRL---------KRKSGGGFVKGDIRI 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 86 LRRGCASGYAEVDFVGIDGHR-YRARWETRRSRDKADGALQKSQQSLQDLDTQQMlaankksefreqLEQKLGLNFAQFT 164
Cdd:pfam13476 65 GLEGKGKAYVEITFENNDGRYtYAIERSRELSKKKGKTKKKEILEILEIDELQQF------------ISELLKSDKIILP 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 657908800 165 RAVLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQR 222
Cdd:pfam13476 133 LLVFLGQEREEEFERKEKKERLEELEKALEEKEDEKKLLEKLLQLKEKKKELEELKEE 190
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
1-179 |
1.26e-23 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 100.42 E-value: 1.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1 MKILAIRLKNLASLAGEQEIDFTrePLSSAGLFAITGPTGAGKSTVLDALCLALFGSTPRLEstsasskvpdgrnelSSN 80
Cdd:cd03279 1 MKPLKLELKNFGPFREEQVIDFT--GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYG---------------RQE 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 81 DERNLLRRGCASgyAEVDFV-GIDGHRYRArwetrrsrdkadgalqksqqslqdldtqqmlaankksefreqlEQKLGLN 159
Cdd:cd03279 64 NLRSVFAPGEDT--AEVSFTfQLGGKKYRV-------------------------------------------ERSRGLD 98
|
170 180
....*....|....*....|
gi 657908800 160 FAQFTRAVLLAQSEFSAFLK 179
Cdd:cd03279 99 YDQFTRIVLLPQGEFDRFLA 118
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-221 |
5.59e-20 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 89.30 E-value: 5.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 2 KILAIRLKNLASLAGEQEIDFTReplssaGLFAITGPTGAGKSTVLDALCLALFGSTPRlestsasskvpdgrnelSSND 81
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIDFDD------GLNLIVGPNGAGKSTILEAIRYALYGKARS-----------------RSKL 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 82 ERNLLRRGCASGYAEVDFVgIDGHRYRARWetrrsrdkadgalqksqqslqdldtqqmlaankksefreqleqklglnfa 161
Cdd:COG0419 58 RSDLINVGSEEASVELEFE-HGGKRYRIER-------------------------------------------------- 86
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 162 qftravllAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQ 221
Cdd:COG0419 87 --------RQGEFAEFLEAKPSERKEALKRLLGLEIYEELKERLKELEEALESALEELAE 138
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
340-922 |
5.83e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.53 E-value: 5.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 340 AERLQGLQARVQEARERQAQADDHLRQAQAPLREAfQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRH 419
Cdd:COG1196 212 AERYRELKEELKELEAELLLLKLRELEAELEELEA-ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 420 VAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQR-RQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEPDD 498
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAElEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 499 LAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTREL 578
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 579 LQRQRLARSSSVEQLRAglvdgeacpvcgsqehpyHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRER 658
Cdd:COG1196 451 EAELEEEEEALLELLAE------------------LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 659 LNQsRQEQQELTGQLAALDrqleqwTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRA 738
Cdd:COG1196 513 ALL-LAGLRGLAGAVAVLI------GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 739 AETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEhwQRWQADPLRTFQALGESIEQRRQQQARLQQVEQRLQEL 818
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR--TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 819 KQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREE 898
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580
....*....|....*....|....
gi 657908800 899 QLRLAEALEHLQQQRQRQQDEFQR 922
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELER 767
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
311-1054 |
6.65e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 6.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 311 LIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREAFQLESEA-RRLERTLA 389
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLeQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 390 ERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWAthqgqlAAFVQRRQRALESQAQLPE 469
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE------AELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 470 LEKSLAQAGEPLERLQAQWAALhGSEPDDLAARLDELRRQTDSLERQQALHkewqqaldQRTGLARRLGELDQRMVEQEQ 549
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERL-EARLERLEDRRERLQQEIEELLKKLEEA--------ELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 550 ALLDLKRQGSQCAEQVKAAEQALQVTRELLQR--QRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQ---SEQ------ 618
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQlqARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvlSELisvdeg 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 619 ----LLAALGEH-------DDQEQVRAEQALERLRQTLVGLREgYSSQRERLNQSRQEQQeLTGQLAALDRQLEQWTLPE 687
Cdd:TIGR02168 535 yeaaIEAALGGRlqavvveNLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQGNDREI-LKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 688 ELR-LLQPSAQLEWLAQRLDELAGQRQQCQRDFdRLIARQRQTQQLQ-----QELRAAETILQQRQ------QALTEQRQ 755
Cdd:TIGR02168 613 KLRkALSYLLGGVLVVDDLDNALELAKKLRPGY-RIVTLDGDLVRPGgvitgGSAKTNSSILERRReieeleEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 756 RYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPLRTFQALGEsiEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQ 835
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR--KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 836 RNEARQAEERVQAELAELNGRLGAHLGQHacaqdwqlslehaaQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQR 915
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEEL--------------KALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 916 QQDEFQRLqadwqawrerqdnlddsrldallglsEEQATQWREQLQRLQEEITRQQTL--EAERQAQLLQHRRQRPETDR 993
Cdd:TIGR02168 836 TERRLEDL--------------------------EEQIEELSEDIESLAAEIEELEELieELESELEALLNERASLEEAL 889
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 657908800 994 EALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRrwGRLNEL 1054
Cdd:TIGR02168 890 ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ--ERLSEE 948
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
178-770 |
3.82e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 3.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 178 LKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQRlegslplaEQARAGLEAALESHAQARLQEQQALQR 257
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAEL--------AELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 258 LEGQQQwftEEQRLLQSCEHAQGQLAEARQAWDALATEREtlQWLERLApvrGLIERLKQLEQELRHSEQQQRQRTEQQA 337
Cdd:COG1196 290 EYELLA---ELARLEQDIARLEERRRELEERLEELEEELA--ELEEELE---ELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 338 AGAERlqgLQARVQEARERQAQADDHLRQAQAPLREAFQLESEARRLERTLAERQElhrqsnqrhaqqsdaaRQLDMEQQ 417
Cdd:COG1196 362 EAEEA---LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE----------------RLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 418 RHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQwaalhgsepd 497
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR---------- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 498 dLAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTR- 576
Cdd:COG1196 493 -LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKa 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 577 ---ELLQRQRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGyS 653
Cdd:COG1196 572 graTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV-T 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 654 SQRERLNQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQ 733
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580 590
....*....|....*....|....*....|....*..
gi 657908800 734 QELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQ 770
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
200-714 |
2.75e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 2.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 200 QLSKAAYQRASQADEQRKQLEQRLEgslPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQ 279
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIA---RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 280 GQLAEARQAwdALATERETLQWLERLapvrgliERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQ 359
Cdd:COG1196 358 AELAEAEEA--LLEAEAELAEAEEEL-------EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 360 ADDHLRQAQAPLREAFQ-----LESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRH-VAEQAQLQAALRDS 433
Cdd:COG1196 429 ALAELEEEEEEEEEALEeaaeeEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlLLLEAEADYEGFLE 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 434 QALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHgsepDDLAARLDELRRQTDSL 513
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK----AAKAGRATFLPLDKIRA 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 514 ERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLkrqgsqcAEQVKAAEQALQVTRELLQRQRLARSSSVEQL 593
Cdd:COG1196 585 RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR-------TLVAARLEAALRRAVTLAGRLREVTLEGEGGS 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 594 RAGLVDGEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQL 673
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 657908800 674 AALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQ 714
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-1014 |
1.02e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 214 EQRKQLEqRLEGSLPLAEQARAgLEAALEsHAQARLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQAWDALA 293
Cdd:TIGR02168 197 ELERQLK-SLERQAEKAERYKE-LKAELR-ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 294 TERETLQwlERLAPVRGLIERLKQ----LEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQA 369
Cdd:TIGR02168 274 LEVSELE--EEIEELQKELYALANeisrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 370 plreafQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWATHQGQ 449
Cdd:TIGR02168 352 ------ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 450 LAAFVQRRQRAlESQAQLPELEKSLAQAGEPLERLQAQWAALHGS------EPDDLAARLDELRRQTDSLERQQALH--- 520
Cdd:TIGR02168 426 LLKKLEEAELK-ELQAELEELEEELEELQEELERLEEALEELREEleeaeqALDAAERELAQLQARLDSLERLQENLegf 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 521 ----KEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQ--CAEQVKAAEQALqvtrELLQRQRLARSSSVEqlr 594
Cdd:TIGR02168 505 segvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQavVVENLNAAKKAI----AFLKQNELGRVTFLP--- 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 595 AGLVDGEACPVCGSQEHPYHQSEQLLAAlgehddqEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQE-----L 669
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAK-------DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGyrivtL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 670 TGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQA 749
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 750 LTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADplrtfqalgesiEQRRQQQARLQQVEQRLQELKQRCDESSWQL 829
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE------------ERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 830 KQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALEHL 909
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 910 QqqrqrqqDEFQRLQADWQAWRERQDNLDDSRLDAllglsEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQRP 989
Cdd:TIGR02168 879 L-------NERASLEEALALLRSELEELSEELREL-----ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
810 820
....*....|....*....|....*
gi 657908800 990 ETDREALEDNLRQQRERLATSEQAY 1014
Cdd:TIGR02168 947 EEYSLTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-1043 |
2.60e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 2.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 207 QRASQADEQRKQLEQ-RLEGSLPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQScehAQGQLAEA 285
Cdd:TIGR02168 210 EKAERYKELKAELRElELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE---LEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 286 RQAWDALATERETLQwlerlAPVRGLIERLKQLEQELrhseqqqrqrteqqAAGAERLQGLQARVQEARERQAQADDHLR 365
Cdd:TIGR02168 287 QKELYALANEISRLE-----QQKQILRERLANLERQL--------------EELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 366 QAQAplreafQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWAT 445
Cdd:TIGR02168 348 ELKE------ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 446 HQGQLAAFVQRRQRAlESQAQLPELEKSLAQAGEPLERLQAQWAALHGS------EPDDLAARLDELRRQTDSLERQQAL 519
Cdd:TIGR02168 422 EIEELLKKLEEAELK-ELQAELEELEEELEELQEELERLEEALEELREEleeaeqALDAAERELAQLQARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 520 H-------KEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQ--CAEQVKAAEQALqvtrELLQRQRLARSSSV 590
Cdd:TIGR02168 501 LegfsegvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQavVVENLNAAKKAI----AFLKQNELGRVTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 591 EqlrAGLVDGEACPVCGSQEHPYHQSEQLLAAlgehddqEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQE-- 668
Cdd:TIGR02168 577 P---LDSIKGTEIQGNDREILKNIEGFLGVAK-------DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGyr 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 669 ---LTGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQ 745
Cdd:TIGR02168 647 ivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 746 RQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADplrtfqalgesiEQRRQQQARLQQVEQRLQELKQRCDES 825
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE------------ERLEEAEEELAEAEAEIEELEAQIEQL 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 826 SWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEA 905
Cdd:TIGR02168 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 906 LEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDD--SRLDALLGLSEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQ 983
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELESkrSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657908800 984 HRRQRP---ETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERARA 1043
Cdd:TIGR02168 955 EAEALEnkiEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
6-432 |
2.66e-13 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 74.28 E-value: 2.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 6 IRLKNLASLaGEQEIDFTrepLSSAGLFAITGPTGAGKSTVLDALCLALFGSTPRlestsaSSKVPDGRNelsSNDERNL 85
Cdd:PHA02562 7 IRYKNILSV-GNQPIEIQ---LDKVKKTLITGKNGAGKSTMLEALTFALFGKPFR------DIKKGQLIN---SINKKDL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 86 LrrgcasgyAEVDFvGIDGHRYRArweTRRsrdkadgalQKSQQSLQDLDTQQMLAANKKSEFREQLEQKLGLNFAQFTR 165
Cdd:PHA02562 74 L--------VELWF-EYGEKEYYI---KRG---------IKPNVFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQ 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 166 AVLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSK-------AAYQRASQADEQRKQLEQRL-------EGSLPLAE 231
Cdd:PHA02562 133 IVVLGTAGYVPFMQLSAPARRKLVEDLLDISVLSEMDKlnkdkirELNQQIQTLDMKIDHIQQQIktynkniEEQRKKNG 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 232 QARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQrllqscEHAQGQLAEARQAWDALATERETLQWLERLAPVRGL 311
Cdd:PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI------EDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGV 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 312 IERLKQ-LEQElrhseqqqrqrteqqaagaerlqglQARVQEARERQAQADDHLRQAQAPLREAFQLESEARRLERTLAE 390
Cdd:PHA02562 287 CPTCTQqISEG-------------------------PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLE 341
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 657908800 391 RQ---ELHRQSNQRHAQQSDAAR----QLDMEQQRHVAEQAQLQAALRD 432
Cdd:PHA02562 342 LKnkiSTNKQSLITLVDKAKKVKaaieELQAEFVDNAEELAKLQDELDK 390
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
664-1192 |
4.25e-13 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 73.65 E-value: 4.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 664 QEQQELTGQLAALDRQLEQWTlpeelrllQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETI- 742
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYA--------ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELa 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 743 -LQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLlSDEHWQRWQADPLRTFQALGESIEQRRQQQARLQQVEQRLQELKQR 821
Cdd:COG4717 143 eLPERLEELEERLEELRELEEELEELEAELAEL-QEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 822 CDESSWQLKQSDEQRNEARQAEERVQAE-LAELNGRLGAHLGQHACAQDWQLS------------------LEHAAQAAQ 882
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARlLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllallfllLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 883 SAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLGL-------------- 948
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEleqeiaallaeagv 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 949 -SEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQR 1027
Cdd:COG4717 382 eDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAE 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1028 REQ------SQALLAELERARAEF----RRWGRLNelIGSSSGDKFRRIAQGYNLDLLVQHSNVQLRQLAR-RYRLQRGG 1096
Cdd:COG4717 462 LEQleedgeLAELLQELEELKAELrelaEEWAALK--LALELLEEAREEYREERLPPVLERASEYFSRLTDgRYRLIRID 539
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1097 SELGLLVVDTEmgDELRSVYSLSGGETFLISLALALGLASMASSklRIESLFIDEGFGSLDPESLQLAMDALDNLqAQGR 1176
Cdd:COG4717 540 EDLSLKVDTED--GRTRPVEELSRGTREQLYLALRLALAELLAG--EPLPLILDDAFVNFDDERLRAALELLAEL-AKGR 614
|
570
....*....|....*.
gi 657908800 1177 KVAVISHVQEMHERIP 1192
Cdd:COG4717 615 QVIYFTCHEELVELFQ 630
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
635-1008 |
2.24e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 635 EQALERLRQTlvglregyssqRERLNQSRQEQQELTGQLAALDRQLEQ----WTLPEELRLLQPSA---QLEWLAQRLDE 707
Cdd:COG1196 175 EEAERKLEAT-----------EENLERLEDILGELERQLEPLERQAEKaeryRELKEELKELEAELlllKLRELEAELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 708 LAGQRQQCQRDFDRLIARqrqtqqlqqelraaetiLQQRQQALTEQRQRYEHLQQQVEEDSQQLRpllsdehwqrwqadp 787
Cdd:COG1196 244 LEAELEELEAELEELEAE-----------------LAELEAELEELRLELEELELELEEAQAEEY--------------- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 788 lrtfqalgESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACA 867
Cdd:COG1196 292 --------ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 868 QDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLG 947
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 657908800 948 LSEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRERLA 1008
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
101-969 |
2.63e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 101 GIDGHRYRaRWETRRSRDKADGALQKSQQSLQDLDTQ------QMLAANKKSEFREQLEQK----LGLNFAQFTRAVLLA 170
Cdd:TIGR02168 166 GISKYKER-RKETERKLERTRENLDRLEDILNELERQlkslerQAEKAERYKELKAELRELelalLVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 171 QSEFSAF---LKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAALESHAQA 247
Cdd:TIGR02168 245 QEELKEAeeeLEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 248 RLQEQQALQRLEGQ-QQWFTEEQRLLQSCEHAQGQLAEARQAWDALATERETLQwLERLAPVRGLIERLKQLEQelrhse 326
Cdd:TIGR02168 325 LEELESKLDELAEElAELEEKLEELKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLELQIAS------ 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 327 qqqrqrteqqaagaerlqgLQARVQEARERQAQADDHLRQAQAPLREAFQLESEArRLERTLAERQELHRQSNQRHAQQS 406
Cdd:TIGR02168 398 -------------------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA-ELKELQAELEELEEELEELQEELE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 407 DAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQA 486
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 487 QWAALHGSEPDDLAARLDELRRQTDSLERQQALHKEWQQALDQRTGlaRRLGELDQRMVEQEQALLDLKRQGSQCAEQVK 566
Cdd:TIGR02168 538 AIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 567 AAEQAL----QVTRELLQRQRLARSSSvEQLRAGLVDGEACPVCGSQehpyhqseqllaaLGEHDDQEQVRAE--QALER 640
Cdd:TIGR02168 616 KALSYLlggvLVVDDLDNALELAKKLR-PGYRIVTLDGDLVRPGGVI-------------TGGSAKTNSSILErrREIEE 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 641 LRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEqwtlpeelrllQPSAQLEWLAQRLDELAGQRQQCQRDFD 720
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-----------ELSRQISALRKDLARLEAEVEQLEERIA 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 721 RLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRpllsdehwqrwqadplrtfQALGESIEQ 800
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR-------------------EALDELRAE 811
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 801 RRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQA 880
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 881 AQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRER-----QDNLDDsrLDALLGLSEEQATQ 955
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeySLTLEE--AEALENKIEDDEEE 969
|
890
....*....|....
gi 657908800 956 WREQLQRLQEEITR 969
Cdd:TIGR02168 970 ARRRLKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
267-1171 |
1.60e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 69.17 E-value: 1.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 267 EEQRLLQSCEHAQGQLAEARQAWDALATERETLqwlERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQAAgaERLQGL 346
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQI---ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ--RRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 347 QARVQEARERQAQADDHLRQAQAPLREAFQLESEARR------------LERTLAERQELHRQSNQRHAQQSDAARQLDM 414
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAqirgnggdrleqLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 415 EQQRHVAEQAQLQAALRdsQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAG----EPLERLQAQWAA 490
Cdd:COG4913 374 PLPASAEEFAALRAEAA--ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 491 LHGSEPDDL--AARLDELRrqtdslerqqALHKEWQQALDQRT-GLARRLgeldqrMVEQEQAlldlkrqgsqcaeqvka 567
Cdd:COG4913 452 ALGLDEAELpfVGELIEVR----------PEEERWRGAIERVLgGFALTL------LVPPEHY----------------- 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 568 aEQALQVTRELLQRQRL----ARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSeqLLAALGEHDDQEQVRAEQALERLRQ 643
Cdd:COG4913 499 -AAALRWVNRLHLRGRLvyerVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAW--LEAELGRRFDYVCVDSPEELRRHPR 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 644 --TLVGLREGYSSQRERLNQSRQEQQELTGQLAAldrqleqwtlpeelrllqpsAQLEWLAQRLDELAGQRQQCQRDFDR 721
Cdd:COG4913 576 aiTRAGQVKGNGTRHEKDDRRRIRSRYVLGFDNR--------------------AKLAALEAELAELEEELAEAEERLEA 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 722 LiarqrqtqqlqqelraaetilQQRQQALTEQRQRYEHLQQQVEEDSQqlrpllsdehWQRWQADplrtfqalgesieqr 801
Cdd:COG4913 636 L---------------------EAELDALQERREALQRLAEYSWDEID----------VASAERE--------------- 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 802 rqqqarlqqvEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAA 881
Cdd:COG4913 670 ----------IAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 882 QSAV---------ETLQAPLDSLREEQLR--LAEALEHLQQQRQRQQDEFQRLQADW-QAWRERQDNLDDSrldallgls 949
Cdd:COG4913 740 EDLArlelralleERFAAALGDAVERELRenLEERIDALRARLNRAEEELERAMRAFnREWPAETADLDAD--------- 810
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 950 EEQATQWREQLQRLQEEITrqqtleAERQAQLLQHRRQRPETDRE----ALEDNLRQQRERLATSEQA------YLDTYS 1019
Cdd:COG4913 811 LESLPEYLALLDRLEEDGL------PEYEERFKELLNENSIEFVAdllsKLRRAIREIKERIDPLNDSlkripfGPGRYL 884
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1020 QLQADNQRREQSQALLAELERARAefrrwgRLNELIGSSSGDKFRRIAQgyNLDLLVQHSNVQLRQLARRYRLQRGGSEL 1099
Cdd:COG4913 885 RLEARPRPDPEVREFRQELRAVTS------GASLFDEELSEARFAALKR--LIERLRSEEEESDRRWRARVLDVRNHLEF 956
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1100 GLLVVDTEmGDELRSVYS----LSGGET-----FLI--SLALALGLASMASSKLRIesLFIDEGFGSLDPESLQLAMDAL 1168
Cdd:COG4913 957 DAEEIDRE-DGEEVETYSssggKSGGEKqklayFILaaALAYQLGLEGRGRPSFRT--VVLDEAFSKMDEEFARRALRLF 1033
|
...
gi 657908800 1169 DNL 1171
Cdd:COG4913 1034 KEL 1036
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
1117-1206 |
1.04e-10 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 62.62 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1117 SLSGGETFLISLALALGLASMASSKLRIesLFIDEGFGSLDPESLQLAM-DALDNLQAQG-RKVAVISHVQEMHERIPVQ 1194
Cdd:cd03240 115 RCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLDEENIEESLaEIIEERKSQKnFQLIVITHDEELVDAADHI 192
|
90
....*....|..
gi 657908800 1195 VRVQREGNGMSS 1206
Cdd:cd03240 193 YRVEKDGRQKSR 204
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
3-110 |
1.76e-10 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 61.85 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 3 ILAIRLKNLASLAGEQEIDFTReplssaGLFAITGPTGAGKSTVLDALCLALFGSTPRleSTSASSKVPDgrnelssnde 82
Cdd:cd03240 1 IDKLSIRNIRSFHERSEIEFFS------PLTLIVGQNGAGKTTIIEALKYALTGELPP--NSKGGAHDPK---------- 62
|
90 100
....*....|....*....|....*...
gi 657908800 83 rnLLRRGCASGYAEVDFVGIDGHRYRAR 110
Cdd:cd03240 63 --LIREGEVRAQVKLAFENANGKKYTIT 88
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
743-1047 |
3.70e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 743 LQQRQQALTEQRQRYEHLQQQVE--EDSQQLRPLLSDEHWQRWQADplrtFQALGESIEQRRQQQARLQQVEQRLQELKQ 820
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLERQAEkaERYKELKAELRELELALLVLR----LEELREELEELQEELKEAEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 821 RCDEsswQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQL 900
Cdd:TIGR02168 264 ELEE---KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 901 RLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDS--RLDALLGLSEEQATQWREQLQRLQEEITRQQtleaERQ 978
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQleTLRSKVAQLELQIASLNNEIERLEARLERLE----DRR 416
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 657908800 979 AQLLQhrrQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRR 1047
Cdd:TIGR02168 417 ERLQQ---EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
1118-1205 |
4.81e-09 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 56.60 E-value: 4.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1118 LSGGETFLISLALALGLASMASSKLRIeslfIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISHVQEMHERIPVQVRV 1197
Cdd:cd03227 78 LSGGEKELSALALILALASLKPRPLYI----LDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHI 153
|
....*...
gi 657908800 1198 QREGNGMS 1205
Cdd:cd03227 154 KKVITGVY 161
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-789 |
5.06e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 5.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 266 TEEQR--LLQSCEHAQgQLAEARQAWDALATERETLQWLERLAPVRGLIERLKQLEQElrhseqqqrqrteqqaagaerL 343
Cdd:COG4913 247 AREQIelLEPIRELAE-RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAE---------------------L 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 344 QGLQARVQEARERQAQADDHLRQAQAPLREAF-----QLESEARRLERTLAERQelhrqsnQRHAQQSDAARQLDMEQQR 418
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNGgdrleQLEREIERLERELEERE-------RRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 419 HVAEQAQLQAALRdsQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAG----EPLERLQAQWAALHGS 494
Cdd:COG4913 378 SAEEFAALRAEAA--ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 495 EPDDL--AARLDELRrqtdslerqqALHKEWQQAL--------------DQRTGLARRL-------GELD-QRMVEQEQA 550
Cdd:COG4913 456 DEAELpfVGELIEVR----------PEEERWRGAIervlggfaltllvpPEHYAAALRWvnrlhlrGRLVyERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 551 LLDLKRQGSQCAEQVKAAEQALQ--VTRELLQRQRLARSSSVEQLR--------AGLVDGEacpvcgsqehpyhqseqll 620
Cdd:COG4913 526 PERPRLDPDSLAGKLDFKPHPFRawLEAELGRRFDYVCVDSPEELRrhpraitrAGQVKGN------------------- 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 621 AALGEHDDQEQVR--------AEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEQWtlPEELRLL 692
Cdd:COG4913 587 GTRHEKDDRRRIRsryvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYS--WDEIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 693 QpsaqlewLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLR 772
Cdd:COG4913 665 S-------AEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
570
....*....|....*...
gi 657908800 773 PLLSD-EHWQRWQADPLR 789
Cdd:COG4913 738 AAEDLaRLELRALLEERF 755
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
668-1039 |
1.06e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 668 ELTGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARqrqtqqlqqelraaETILQQRQ 747
Cdd:TIGR02168 197 ELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE--------------LEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 748 QALTEQRQRYEHLQQQVEEDSQQLRpllsdehwqrwqadplRTFQALGESIEQrrqqqarlqqVEQRLQELKQRCDESSW 827
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQ----------------KELYALANEISR----------LEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 828 QLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALE 907
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 908 HLQQQRQRQQDEFQRLQadwqawrERQDNLDDSRLDALLGLSEEQATQWREQLQRLQEEITRQQtleaerqaqllqhrrq 987
Cdd:TIGR02168 397 SLNNEIERLEARLERLE-------DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ---------------- 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 657908800 988 rpeTDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELE 1039
Cdd:TIGR02168 454 ---EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
811-1044 |
1.23e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 811 VEQRLQELKQRCDESSWQLKQSDEQRNEARQAEErVQAELAELNGRLGAHLGQHACAQDWQL-----SLEHAAQAAQSAV 885
Cdd:COG1196 184 TEENLERLEDILGELERQLEPLERQAEKAERYRE-LKEELKELEAELLLLKLRELEAELEELeaeleELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 886 ETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDDS--RLDALLGLSEEQATQWREQLQRL 963
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERleELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 964 QEEITRQQTLEAERQAQLLQHRRQRPETDREALE--DNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERA 1041
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEaeEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
...
gi 657908800 1042 RAE 1044
Cdd:COG1196 423 LEE 425
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
112-844 |
2.61e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 2.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 112 ETRRSRDKADGALQKSQQSLQDLDTQQMlaanKKSEFREQLEQKLGLnfAQFTRAVLLAQSEFSAFLKASdndrgalLEK 191
Cdd:PTZ00121 1057 EGKAEAKAHVGQDEGLKPSYKDFDFDAK----EDNRADEATEEAFGK--AEEAKKTETGKAEEARKAEEA-------KKK 1123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 192 LTDTGLYSQLSKAayQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRL 271
Cdd:PTZ00121 1124 AEDARKAEEARKA--EDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARK 1201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 272 LQSCEHAQG--QLAEARQAWDALATERetlqwLERLAPVRGLIERLKQLEQElRHSEQQQRQRTEQQAAGAERLQGLQAr 349
Cdd:PTZ00121 1202 AEAARKAEEerKAEEARKAEDAKKAEA-----VKKAEEAKKDAEEAKKAEEE-RNNEEIRKFEEARMAHFARRQAAIKA- 1274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 350 vQEARERqaqadDHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRhvAEQAQLQAA 429
Cdd:PTZ00121 1275 -EEARKA-----DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK--AEEAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 430 LRDSQALAALGDAWATHQGQLAAFVQR---RQRALESQAQLPELEKSlAQAGEPLERLQAQWAALHGSEPDDLAArlDEL 506
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKeeaKKKADAAKKKAEEKKKA-DEAKKKAEEDKKKADELKKAAAAKKKA--DEA 1423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 507 RRQTDSLERQQALHKEWQQA-----LDQRTGLARRLGELDQRMVEQEQALlDLKRQgsqcAEQVKAAEQALQVTRELLQR 581
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAkkadeAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKK----AEEAKKADEAKKKAEEAKKK 1498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 582 QRLARSSSVEQLRAGlvdgEAcpvcgSQEHPYHQSEQLLAALGEHDDQEQVRAEQA--LERLRQTlVGLREGYSSQRERL 659
Cdd:PTZ00121 1499 ADEAKKAAEAKKKAD----EA-----KKAEEAKKADEAKKAEEAKKADEAKKAEEKkkADELKKA-EELKKAEEKKKAEE 1568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 660 NQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQPSAQLEW-LAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRA 738
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAeEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 739 AEtilqQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPLRTFQALGESIEQRRQQQARLQQVEQRLQEL 818
Cdd:PTZ00121 1649 AE----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
|
730 740
....*....|....*....|....*.
gi 657908800 819 KQRCDESSWQLKQSDEQrnEARQAEE 844
Cdd:PTZ00121 1725 EEENKIKAEEAKKEAEE--DKKKAEE 1748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
503-1047 |
5.38e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 503 LDELRRQTDSLERQ--------------------------QALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKR 556
Cdd:TIGR02168 195 LNELERQLKSLERQaekaerykelkaelrelelallvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 557 QGSQCAEQVKAAEQALQVTRELLQR---------QRLARS-SSVEQLRAGLVDGEACPVCgSQEHPYHQSEQLLAALGEH 626
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRleqqkqilrERLANLeRQLEELEAQLEELESKLDE-LAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 627 DDQ--EQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEQ--------WTLPEELRLLQPSA 696
Cdd:TIGR02168 354 ESLeaELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrrerlQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 697 QLEWLAQRLDELAGQRQQCQRDFDRLIArqrQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLS 776
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEELERLEE---ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 777 DEHWQRWQADplrTFQALGESIEQRRQQQARLQQV-EQRLQELKQRCDESSWQLKQSDEQRNEARQAE-ERVQAELAELN 854
Cdd:TIGR02168 511 LLKNQSGLSG---ILGVLSELISVDEGYEAAIEAAlGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFlPLDSIKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 855 GRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETL---------------------------------------------- 888
Cdd:TIGR02168 588 GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsak 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 889 --------QAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLDD--SRLDALLGLSEEQATQWRE 958
Cdd:TIGR02168 668 tnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRqiSALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 959 QLQRLQEEITRQQTLEAERQAQL--LQHRRQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLA 1036
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLeeAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
650
....*....|.
gi 657908800 1037 ELERARAEFRR 1047
Cdd:TIGR02168 828 SLERRIAATER 838
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1083-1195 |
1.07e-07 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 52.63 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1083 LRQLARRYRLQRGGSELGLLVVDTEMGDELRS----VYSLSGGETFLISLALALglasMASSKLriesLFIDEGFGSLDP 1158
Cdd:cd00267 42 LRAIAGLLKPTSGEILIDGKDIAKLPLEELRRrigyVPQLSGGQRQRVALARAL----LLNPDL----LLLDEPTSGLDP 113
|
90 100 110
....*....|....*....|....*....|....*..
gi 657908800 1159 ESLQLAMDALDNLQAQGRKVAVISHVQEMHERIPVQV 1195
Cdd:cd00267 114 ASRERLLELLRELAEEGRTVIIVTHDPELAELAADRV 150
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
5-97 |
2.40e-07 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 51.59 E-value: 2.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 5 AIRLKNLASLAGEQEIDFTREPLssaglFAITGPTGAGKSTVLDALCLALFGSTPRLEStsaSSKVPDGRNELSSNDERN 84
Cdd:cd03227 1 KIVLGRFPSYFVPNDVTFGEGSL-----TIITGPNGSGKSTILDAIGLALGGAQSATRR---RSGVKAGCIVAAVSAELI 72
|
90
....*....|...
gi 657908800 85 LLRRGCASGYAEV 97
Cdd:cd03227 73 FTRLQLSGGEKEL 85
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
267-1027 |
3.12e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 267 EEQRLLQSCEHAQGQLAEARQAWDALATE-RETLQWLERLAPVRGlIERLKQLE-----QELRHSEQQQRQRTEQQAAGA 340
Cdd:PTZ00121 1085 EDNRADEATEEAFGKAEEAKKTETGKAEEaRKAEEAKKKAEDARK-AEEARKAEdarkaEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 341 ERLQgLQARVQEARE-RQAQADDHLRQAQApLREAfqleSEARRLERtlAERQELHRQSNQrhAQQSDAARQLD----ME 415
Cdd:PTZ00121 1164 RKAE-EARKAEDAKKaEAARKAEEVRKAEE-LRKA----EDARKAEA--ARKAEEERKAEE--ARKAEDAKKAEavkkAE 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 416 QQRHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQ-RALESQAQLPELEKS--LAQAGEPLERLQAQWAALH 492
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEaRKADELKKAEEKKKAdeAKKAEEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 493 GSEPDDLAARLDELRRQTDSLERQ--------QALHKEWQQALDQRTGlARRLGELDQRMVEQEQALLD-LKRQgsqcAE 563
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKaeeakkaaEAAKAEAEAAADEAEA-AEEKAEAAEKKKEEAKKKADaAKKK----AE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 564 QVKAAEQALQVTRELLQRQRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQ 643
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 644 TLVGLR-EGYSSQRERLNQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQPsaqlewlAQRLDELagQRQQCQRDFDRl 722
Cdd:PTZ00121 1469 AKKADEaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE-------AKKADEA--KKAEEAKKADE- 1538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 723 iARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRpllsdehwqrwQADPLRTFQALGESIEQRR 802
Cdd:PTZ00121 1539 -AKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK-----------KAEEARIEEVMKLYEEEKK 1606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 803 QQQARLQQVEQ---RLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAElaELNGRLGAHLGQHACAQDWQLS-LEHAA 878
Cdd:PTZ00121 1607 MKAEEAKKAEEakiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE--EENKIKAAEEAKKAEEDKKKAEeAKKAE 1684
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 879 QAAQSAVETLQAPLDSLRE-EQLRLAEALEHLQQQRQRQQDEFQRLQADwQAWRErqdnlddsrldallglsEEQATQWR 957
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKaEELKKKEAEEKKKAEELKKAEEENKIKAE-EAKKE-----------------AEEDKKKA 1746
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 958 EQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQR 1027
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKE 1816
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
1027-1184 |
5.09e-07 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 51.55 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1027 RREQSQALlAELERARAEFRRwgRLNELIGSSSGDKFRRIAQGYNLDLLVQHSNVQLRQLARRYRLQRGgselgllvvdt 1106
Cdd:COG0419 85 ERRQGEFA-EFLEAKPSERKE--ALKRLLGLEIYEELKERLKELEEALESALEELAELQKLKQEILAQL----------- 150
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 657908800 1107 emgDELRSVYSLSGGETflislaLALGLASMASsklriesLFIDegFGSLDPESLQLAMDALDNLQaqgrkvaVISHV 1184
Cdd:COG0419 151 ---SGLDPIETLSGGER------LRLALADLLS-------LILD--FGSLDEERLERLLDALEELA-------IITHV 203
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
208-859 |
5.10e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 208 RASQADEQRKQLEQRLEgslplaeQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQ 287
Cdd:COG3096 362 RLEEQEEVVEEAAEQLA-------EAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLPDL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 288 AWDALATERETLQwlerlAPVRGLIERLKQLEQELRHSEQQQR------QRTEQQAAGAERLQGLQARVQ---EARERQA 358
Cdd:COG3096 435 TPENAEDYLAAFR-----AKEQQATEEVLELEQKLSVADAARRqfekayELVCKIAGEVERSQAWQTAREllrRYRSQQA 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 359 QADdHLRQAQAPLREAFQLESEARRLERTLAErqelhrqSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAA 438
Cdd:COG3096 510 LAQ-RLQQLRAQLAELEQRLRQQQNAERLLEE-------FCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRS 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 439 lgdAWATHQGQLAAFVQR-RQRA---LESQAQLPELEkslAQAGEPLERLQAQWAALHgsepdDLAARLDELRRQTDSL- 513
Cdd:COG3096 582 ---ELRQQLEQLRARIKElAARApawLAAQDALERLR---EQSGEALADSQEVTAAMQ-----QLLEREREATVERDELa 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 514 ERQQALHKEWQQ------ALDQR-TGLARRLG-----------------ELDQRMVEQEQALL--DLKRQGSQ------C 561
Cdd:COG3096 651 ARKQALESQIERlsqpggAEDPRlLALAERLGgvllseiyddvtledapYFSALYGPARHAIVvpDLSAVKEQlagledC 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 562 AEQV---------------KAAEQALQVTRELLQRQ-------------RLARSSSVEQLRA---GLVDGEACPVCGSQE 610
Cdd:COG3096 731 PEDLyliegdpdsfddsvfDAEELEDAVVVKLSDRQwrysrfpevplfgRAAREKRLEELRAerdELAEQYAKASFDVQK 810
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 611 HP--YHQSEQLlaaLGEHDDQE-QVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEQWTLPE 687
Cdd:COG3096 811 LQrlHQAFSQF---VGGHLAVAfAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLA 887
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 688 ElrllqpsaqlEWLAQRLDELAGQRQQCQRDfDRLIARQRQTQQLQQELRAAetiLQQRQQALTEQRQRYEHLQQQVEED 767
Cdd:COG3096 888 D----------ETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVAV---LQSDPEQFEQLQADYLQAKEQQRRL 953
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 768 SQQLRPLlsDEHWQRwqadplRTFQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQaeervq 847
Cdd:COG3096 954 KQQIFAL--SEVVQR------RPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQ------ 1019
|
730
....*....|..
gi 657908800 848 aELAELNGRLGA 859
Cdd:COG3096 1020 -VLASLKSSRDA 1030
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
6-1044 |
5.32e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 5.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 6 IRLKNLASLAGEQEIDFTReplssaGLFAITGPTGAGKSTVLDALCLALFGSTPR-LESTSASSKVPDGRNELSSNDern 84
Cdd:TIGR02169 5 IELENFKSFGKKKVIPFSK------GFTVISGPNGSGKSNIGDAILFALGLSSSKaMRAERLSDLISNGKNGQSGNE--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 85 llrrgcasGYAEVDFvGIDGHRYRARWETRRSRDKADgalqKSQQSLQDLDTQqmlaANKKSEFREQLeQKLGLNFAQFT 164
Cdd:TIGR02169 76 --------AYVTVTF-KNDDGKFPDELEVVRRLKVTD----DGKYSYYYLNGQ----RVRLSEIHDFL-AAAGIYPEGYN 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 165 ravLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQA-----------DEQRKQLEqRLEGSLPLAEQA 233
Cdd:TIGR02169 138 ---VVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVeenierldliiDEKRQQLE-RLRREREKAERY 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 234 RAGLEAALESHAQARLQEQQA-----------LQRLEGQQQWFTEE-QRLLQSCEHAQGQLAEARQAWDALaTERETLQW 301
Cdd:TIGR02169 214 QALLKEKREYEGYELLKEKEAlerqkeaierqLASLEEELEKLTEEiSELEKRLEEIEQLLEELNKKIKDL-GEEEQLRV 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 302 LERLAPVRGLIERLKQ----LEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREAFQ- 376
Cdd:TIGR02169 293 KEKIGELEAEIASLERsiaeKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAe 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 377 ---LESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQAlaalgdawathqgQLAAF 453
Cdd:TIGR02169 373 leeVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA-------------KINEL 439
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 454 VQRRqraLESQAQLPELEKSLAQAGEPLERLQAQWAALHgSEPDDLAARLDELRRQTDSLE-RQQALHKEWQQALDQRT- 531
Cdd:TIGR02169 440 EEEK---EDKALEIKKQEWKLEQLAADLSKYEQELYDLK-EEYDRVEKELSKLQRELAEAEaQARASEERVRGGRAVEEv 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 532 ---------GLARRLGELDQRMVEQ-EQALldlkrqGSQCAEQVKAAEQALQVTRELLQRQRLARSS--SVEQLRAGLVD 599
Cdd:TIGR02169 516 lkasiqgvhGTVAQLGSVGERYATAiEVAA------GNRLNNVVVEDDAVAKEAIELLKRRKAGRATflPLNKMRDERRD 589
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 600 GEACPVCGSQEHPYHqseqllaaLGEHDDQEQVRAEQAlerLRQTLVglREGYSSQRERLNQSRQ-----EQQELTGQLA 674
Cdd:TIGR02169 590 LSILSEDGVIGFAVD--------LVEFDPKYEPAFKYV---FGDTLV--VEDIEAARRLMGKYRMvtlegELFEKSGAMT 656
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 675 ALDRQLEQwtlpEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQR 754
Cdd:TIGR02169 657 GGSRAPRG----GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 755 QRYEHLQQQVEEDSQQLRPLLSDEHwqrwqadplrtfQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQlkQSDE 834
Cdd:TIGR02169 733 EKLKERLEELEEDLSSLEQEIENVK------------SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP--EIQA 798
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 835 QRNEARQAEERVQAELAELNGRLGAHLGQHACA-------QDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALE 907
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLekeiqelQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 908 HLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDAllglsEEQATQWREQLQRLQEEITR--------QQTLEAERQA 979
Cdd:TIGR02169 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK-----RKRLSELKAKLEALEEELSEiedpkgedEEIPEEELSL 953
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 657908800 980 QLLQHRRQRPETDREALED-NLRQQRErLATSEQAYLDTYSQLQADNQRREQSQALLAELERARAE 1044
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEPvNMLAIQE-YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
1113-1170 |
7.97e-07 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 48.39 E-value: 7.97e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657908800 1113 RSVYSLSGGET-FLISLALALGLASMASSKL----RIESLFIDEGFGSLDPESLQLAMDALDN 1170
Cdd:pfam13558 28 RRSGGLSGGEKqLLAYLPLAAALAAQYGSAEgrppAPRLVFLDEAFAKLDEENIRTALELLRA 90
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
371-722 |
1.21e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.04 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 371 LREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWATHQGQL 450
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 451 AAFVQRRQralESQAQLPELEKSLAQAGEPLERLQAQWAalhgsepdDLAARLDELrrQTDSLERQQALH-----KEWQQ 525
Cdd:PRK04863 365 EEQNEVVE---EADEQQEENEARAEAAEEEVDELKSQLA--------DYQQALDVQ--QTRAIQYQQAVQaleraKQLCG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 526 ALD-QRTGLARRLGELDQRMVEQEQALLDLKRQGS----------QCAEQVKAA------EQALQVTRELLQRQRLAR-- 586
Cdd:PRK04863 432 LPDlTADNAEDWLEEFQAKEQEATEELLSLEQKLSvaqaahsqfeQAYQLVRKIagevsrSEAWDVARELLRRLREQRhl 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 587 SSSVEQLRAGLVDGEacpvcgsQEHPYHQS-EQLLAALG-----EHDDQEQVraEQALERLRQTLVGLREGYSSQRERLN 660
Cdd:PRK04863 512 AEQLQQLRMRLSELE-------QRLRQQQRaERLLAEFCkrlgkNLDDEDEL--EQLQEELEARLESLSESVSEARERRM 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 661 QSRQEQQELTGQLAALDRQLEQW-TLPEELRLLQP--------SAQLEWLAQRL-----------DELAGQRQQCQRDFD 720
Cdd:PRK04863 583 ALRQQLEQLQARIQRLAARAPAWlAAQDALARLREqsgeefedSQDVTEYMQQLlerereltverDELAARKQALDEEIE 662
|
..
gi 657908800 721 RL 722
Cdd:PRK04863 663 RL 664
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
276-772 |
5.46e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 276 EHAQGQLAEARQAWDALAteretlqwlERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARE 355
Cdd:PRK02224 223 ERYEEQREQARETRDEAD---------EVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 356 R--QAQADDHLRQAQAPLREAFQLESEARRLErtLAERQELHRQSNQRHAQQSDAARQlDMEQQRHVAEQAQLQAALRDS 433
Cdd:PRK02224 294 ErdDLLAEAGLDDADAEAVEARREELEDRDEE--LRDRLEECRVAAQAHNEEAESLRE-DADDLEERAEELREEAAELES 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 434 QALAAlgdawathqgqLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHgSEPDDLAARLDELRRQTDSL 513
Cdd:PRK02224 371 ELEEA-----------REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR-EERDELREREAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 514 ERQQAlhkEWQQALD-----------QRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTREL--LQ 580
Cdd:PRK02224 439 RERVE---EAEALLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIerLE 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 581 RQRLARSSSVEQLRAGLVDGEacpvcgsqehpyHQSEQLLAALGEHDDQEQVRAEQALErlrqtlvgLREGYSSQRERLN 660
Cdd:PRK02224 516 ERREDLEELIAERRETIEEKR------------ERAEELRERAAELEAEAEEKREAAAE--------AEEEAEEAREEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 661 QSRQEQQELTGQLAALDRQLEQWTLPEELRllqpsAQLEWLAQRLDELAGQRQQCQrdfDRLiarqrqTQQLQQELRAAE 740
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTLLAAIADAE-----DEIERLREKREALAELNDERR---ERL------AEKRERKRELEA 641
|
490 500 510
....*....|....*....|....*....|..
gi 657908800 741 TILQQRQQALTEQRQRYEHLQQQVEEDSQQLR 772
Cdd:PRK02224 642 EFDEARIEEAREDKERAEEYLEQVEEKLDELR 673
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
834-1047 |
5.84e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 5.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 834 EQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQR 913
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 914 QRQQDEFQRL---------QADWQAWRERQDNLDDSRLDALLGLSEEQATQWREQLQRLQEEITRQQTlEAERQAQLLQH 984
Cdd:COG4942 100 EAQKEELAELlralyrlgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-ELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 657908800 985 RRQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRR 1047
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
205-659 |
6.37e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 50.79 E-value: 6.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 205 AYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQrllqscEHAQGQLAE 284
Cdd:COG3903 477 AAERLAEAGERAAARRRHADYYLALAERAAAELRGPDQLAWLARLDAEHDNLRAALRWALAHGDA------ELALRLAAA 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 285 ARQAWDALATERETLQWLERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHL 364
Cdd:COG3903 551 LAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALA 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 365 RQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWA 444
Cdd:COG3903 631 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAA 710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 445 THQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEPDDLAARLDELRRQTDSLERQQALHKEWQ 524
Cdd:COG3903 711 LAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAA 790
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 525 QALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRQRLARSSSVEQLRAGLVDGEACP 604
Cdd:COG3903 791 AAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAAL 870
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 657908800 605 VCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRERL 659
Cdd:COG3903 871 AAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAA 925
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
230-1005 |
9.49e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 9.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 230 AEQARAGLEAALEshaqARLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQ-AWDALATERETLQWLERLAPV 308
Cdd:COG3096 277 ANERRELSERALE----LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQaASDHLNLVQTALRQQEKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 309 RgliERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQA---QADDHL-------RQAQAPLREAFQLE 378
Cdd:COG3096 353 Q---EDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqQALDVQqtraiqyQQAVQALEKARALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 379 SEARRLERTLAERQELHRqsnqRHAQQSDAARqLDMEQQRHVAEQA--QLQAALRDSQALAA---LGDAWATHQGQLAAF 453
Cdd:COG3096 430 GLPDLTPENAEDYLAAFR----AKEQQATEEV-LELEQKLSVADAArrQFEKAYELVCKIAGeveRSQAWQTARELLRRY 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 454 VQRR---QRALESQAQLPELEKSLAQAGEpLERLQAQWAALHG---SEPDDLAARLDELRRQTDSLERQQALHKEWQQAL 527
Cdd:COG3096 505 RSQQalaQRLQQLRAQLAELEQRLRQQQN-AERLLEEFCQRIGqqlDAAEELEELLAELEAQLEELEEQAAEAVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 528 DQRTG-LARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRQRlARSSSVEQLRAglvdgeacpvc 606
Cdd:COG3096 584 RQQLEqLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER-EATVERDELAA----------- 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 607 gSQEHPYHQSEQLLAALGEHDDQEQVRAEQA-----------------------------------LERLRQTLVGLREG 651
Cdd:COG3096 652 -RKQALESQIERLSQPGGAEDPRLLALAERLggvllseiyddvtledapyfsalygparhaivvpdLSAVKEQLAGLEDC 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 652 ----YSSQRE--RLNQSRQEQQELTGQLAAL--DRQLEQWTLPE---------ELRLLQPSAQLEWLAQRLDELAGQRQQ 714
Cdd:COG3096 731 pedlYLIEGDpdSFDDSVFDAEELEDAVVVKlsDRQWRYSRFPEvplfgraarEKRLEELRAERDELAEQYAKASFDVQK 810
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 715 CQR---DFDRLIAR----------QRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVeEDSQQLRP---LLSDE 778
Cdd:COG3096 811 LQRlhqAFSQFVGGhlavafapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQL-QLLNKLLPqanLLADE 889
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 779 HwqrwqadplrtfqaLGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLK--QSDEQRNEARQAE-ERVQAELAELNG 855
Cdd:COG3096 890 T--------------LADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAvlQSDPEQFEQLQADyLQAKEQQRRLKQ 955
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 856 RLGA--HLGQHACAQDWQLSLEHAAQaAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRER 933
Cdd:COG3096 956 QIFAlsEVVQRRPHFSYEDAVGLLGE-NSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQT 1034
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 657908800 934 QDNLDDSRLDALLGLSEEQATQWREQLQRLQEEI--TRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRE 1005
Cdd:COG3096 1035 LQELEQELEELGVQADAEAEERARIRRDELHEELsqNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQERE 1108
|
|
| ABC_SMC_head |
cd03239 |
The SMC head domain belongs to the ATP-binding cassette superfamily; The structural ... |
3-99 |
1.15e-05 |
|
The SMC head domain belongs to the ATP-binding cassette superfamily; The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Pssm-ID: 213206 [Multi-domain] Cd Length: 178 Bit Score: 47.30 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 3 ILAIRLKNLASLAGEQEIDFtreplsSAGLFAITGPTGAGKSTVLDALCLALFGSTPRLESTSasskvpdgrnELSSNDE 82
Cdd:cd03239 1 IKQITLKNFKSYRDETVVGG------SNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGS----------LLFLAGG 64
|
90
....*....|....*..
gi 657908800 83 RNllRRGCASGYAEVDF 99
Cdd:cd03239 65 GV--KAGINSASVEITF 79
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
180-437 |
1.15e-05 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 49.83 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 180 ASDNDRGALLEKLTDtglySQLSKAAYQRASQADEQRKQLEQRLEGSLplaeQARAGLEAALESHAQARLQEQQALQR-- 257
Cdd:NF012221 1539 ESSQQADAVSKHAKQ----DDAAQNALADKERAEADRQRLEQEKQQQL----AAISGSQSQLESTDQNALETNGQAQRda 1610
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 258 LEGQQQWFTEEqrllqscehaqgqLAEARQAWDAL-----ATERETLQWLERLApvRGLIERL-KQLEQELRHSEQQQRQ 331
Cdd:NF012221 1611 ILEESRAVTKE-------------LTTLAQGLDALdsqatYAGESGDQWRNPFA--GGLLDRVqEQLDDAKKISGKQLAD 1675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 332 RTEQQAAgaeRLQGLQARVQEARERQAQADDHLRQAQAPLREAfQLESEARRLErTLAERQELHRQSNQRHAQQSDAarq 411
Cdd:NF012221 1676 AKQRHVD---NQQKVKDAVAKSEAGVAQGEQNQANAEQDIDDA-KADAEKRKDD-ALAKQNEAQQAESDANAAANDA--- 1747
|
250 260
....*....|....*....|....*.
gi 657908800 412 ldmeQQRhvAEQAQLQAALRDSQALA 437
Cdd:NF012221 1748 ----QSR--GEQDASAAENKANQAQA 1767
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
198-722 |
1.93e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 198 YSQLSKAAYQRAsQADEQRKQLEQRLEGSLPLA----------EQARAGLEAALESHAQARLQEQQALQRLEGQQQ---- 263
Cdd:COG3096 521 LAELEQRLRQQQ-NAERLLEEFCQRIGQQLDAAeeleellaelEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKelaa 599
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 264 ----WFTEEQRLLQSCEHAQGQLAEARQAWDALAT--ERETLQWLERlapvRGLIERLKQLEQELRHSEQQQRQRTEQQA 337
Cdd:COG3096 600 rapaWLAAQDALERLREQSGEALADSQEVTAAMQQllEREREATVER----DELAARKQALESQIERLSQPGGAEDPRLL 675
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 338 AGAERLQGL------------QARVQEAR---ERQA-------QADDHLRQAQAPLREAFQLESEARRLERTLAERQELH 395
Cdd:COG3096 676 ALAERLGGVllseiyddvtleDAPYFSALygpARHAivvpdlsAVKEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELE 755
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 396 R----QSNQRHAQQSD---------AARQLDMEQQRHVAEQ-----AQLQAALRDSQALAALGDAWATHQGQLA------ 451
Cdd:COG3096 756 DavvvKLSDRQWRYSRfpevplfgrAAREKRLEELRAERDElaeqyAKASFDVQKLQRLHQAFSQFVGGHLAVAfapdpe 835
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 452 -AFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGS-------EPDDLAARLDELRRQTDSLERQQALHKEW 523
Cdd:COG3096 836 aELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLlpqanllADETLADRLEELREELDAAQEAQAFIQQH 915
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 524 QQALDQrtgLARRLGELDQRMVEQEQalldLKRQGSQCAEQVKAAEQALQVTRELLQR----------QRLARSSS-VEQ 592
Cdd:COG3096 916 GKALAQ---LEPLVAVLQSDPEQFEQ----LQADYLQAKEQQRRLKQQIFALSEVVQRrphfsyedavGLLGENSDlNEK 988
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 593 LRAGLVdgeacpvcgsqehpyhQSEQLLAALGEHDDQEQVRAEQALerlrQTLVGLREGYSSQRERLNQSRQEQQELTGQ 672
Cdd:COG3096 989 LRARLE----------------QAEEARREAREQLRQAQAQYSQYN----QVLASLKSSRDAKQQTLQELEQELEELGVQ 1048
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 657908800 673 LAAldrQLEQWTLPEELRLLQpsaQLEWLAQRLDELAGQRQQCQRDFDRL 722
Cdd:COG3096 1049 ADA---EAEERARIRRDELHE---ELSQNRSRRSQLEKQLTRCEAEMDSL 1092
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
316-595 |
1.96e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 49.28 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 316 KQLEQELRhseQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLR------QAQAPLREAFQLESEARRLERTLA 389
Cdd:PRK10929 26 KQITQELE---QAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQvidnfpKLSAELRQQLNNERDEPRSVPPNM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 390 ERQELHRQSNQRHAQQSDAARQLDMEQQRHV----------AEQAQLQAALRD-SQALAALGDAwATHQGQlAAFVQRRQ 458
Cdd:PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRAReisdslsqlpQQQTEARRQLNEiERRLQTLGTP-NTPLAQ-AQLTALQA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 459 RALESQAQLPELEksLAQAG----EPLERLQAQwaaLHGSEPDDLAARLDELRRQTDSLERQQAlhkewQQALDQRTGLA 534
Cdd:PRK10929 181 ESAALKALVDELE--LAQLSannrQELARLRSE---LAKKRSQQLDAYLQALRNQLNSQRQREA-----ERALESTELLA 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 657908800 535 RRLGELDQRMVEQEQALLDLKRQGSQCAE--------QVKAAEQALQV------TREllQRQRLARSSSV-EQLRA 595
Cdd:PRK10929 251 EQSGDLPKSIVAQFKINRELSQALNQQAQrmdliasqQRQAASQTLQVrqalntLRE--QSQWLGVSNALgEALRA 324
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
26-67 |
2.21e-05 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 43.36 E-value: 2.21e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 657908800 26 PLSSAGLFAITGPTGAGKSTVLDALcLALFGSTPRLESTSAS 67
Cdd:pfam13555 18 PIDPRGNTLLTGPSGSGKSTLLDAI-QTLLVPAKRARFNKAA 58
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
362-760 |
6.00e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 47.55 E-value: 6.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 362 DHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGD 441
Cdd:COG3899 844 GPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAA 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 442 AWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQW--AALHGSEPDDLAARLDELRRQTDSLERQQAL 519
Cdd:COG3899 924 AAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAalAAAAAAAAAAAAAAAAAALEAAAAALLALLA 1003
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 520 HKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRQRLARSSSVEQLRAGLVD 599
Cdd:COG3899 1004 AAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAA 1083
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 600 GEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQ 679
Cdd:COG3899 1084 AAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLL 1163
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 680 LEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEH 759
Cdd:COG3899 1164 LALAALALAAALAALAAALLAAAAAAAAAAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLL 1243
|
.
gi 657908800 760 L 760
Cdd:COG3899 1244 A 1244
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
147-867 |
6.72e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 6.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 147 EFREQLEQKLGLNFAQFTRAVLLAQS-----EFSAFLKASDNDRGALLEKLTDTGLYSQLSKAA---YQRASQADEQRKQ 218
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEqyrlvEMARELAELNEAESDLEQDYQAASDHLNLVQTAlrqQEKIERYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 219 LEQRLEGSLPLAEQARaglEAALESHAQARLQEQQALqRLEGQ----QQWFTEEQRLLQSCEHAQGQLAEARQAWDALAT 294
Cdd:PRK04863 360 LEERLEEQNEVVEEAD---EQQEENEARAEAAEEEVD-ELKSQladyQQALDVQQTRAIQYQQAVQALERAKQLCGLPDL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 295 ERETLQ-WLERL-APVRGLIERLKQLEQELRHSeqqqRQRTEQQAAGAERLQGLQARV------QEARERQAQADDHLRQ 366
Cdd:PRK04863 436 TADNAEdWLEEFqAKEQEATEELLSLEQKLSVA----QAAHSQFEQAYQLVRKIAGEVsrseawDVARELLRRLREQRHL 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 367 AQaplrEAFQLESEARRLERTLAERQELHR---QSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAAlgdAW 443
Cdd:PRK04863 512 AE----QLQQLRMRLSELEQRLRQQQRAERllaEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRM---AL 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 444 ATHQGQLAAFVQR-RQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHgsepdDLAARLDELRRQTDSLERQQALHKE 522
Cdd:PRK04863 585 RQQLEQLQARIQRlAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ-----QLLERERELTVERDELAARKQALDE 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 523 WQQALDQRTG--------LARRLG-----ELDQRMVEQEQALLDLKRQGSQCA------EQVKAAEQALQVTRELL---- 579
Cdd:PRK04863 660 EIERLSQPGGsedprlnaLAERFGgvllsEIYDDVSLEDAPYFSALYGPARHAivvpdlSDAAEQLAGLEDCPEDLylie 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 580 ---QRQRLARSSSVEQLRAGLVD--GEACPVCGSQEHPY---HQSEQLLAALGEHDDQEQVRAEQA------LERLRQTL 645
Cdd:PRK04863 740 gdpDSFDDSVFSVEELEKAVVVKiaDRQWRYSRFPEVPLfgrAAREKRIEQLRAEREELAERYATLsfdvqkLQRLHQAF 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 646 VGLREGYSS------QRERLNQSRQEQQELTGQLAALD----RQLEQWTLPEE----LRLLQPSAQL---EWLAQRLDEL 708
Cdd:PRK04863 820 SRFIGSHLAvafeadPEAELRQLNRRRVELERALADHEsqeqQQRSQLEQAKEglsaLNRLLPRLNLladETLADRVEEI 899
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 709 AGQRQQCQRDfDRLIARQRQTQQLQQELRAAetiLQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLlsDEHWQRwqadpl 788
Cdd:PRK04863 900 REQLDEAEEA-KRFVQQHGNALAQLEPIVSV---LQSDPEQFEQLKQDYQQAQQTQRDAKQQAFAL--TEVVQR------ 967
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 789 RTFQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQ-------AEERVQAELAELNGRLGAhL 861
Cdd:PRK04863 968 RAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQvlaslksSYDAKRQMLQELKQELQD-L 1046
|
....*.
gi 657908800 862 GQHACA 867
Cdd:PRK04863 1047 GVPADS 1052
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
214-1005 |
6.78e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 6.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 214 EQRKQLEQRLEGSLPLAEQARAGL---------EAALEShAQARLQEQQALQRLEGQQQWFTEEQ--RLLQSCEHAQGQL 282
Cdd:PRK04863 321 EAESDLEQDYQAASDHLNLVQTALrqqekieryQADLEE-LEERLEEQNEVVEEADEQQEENEARaeAAEEEVDELKSQL 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 283 AEARQAWDALatERETLQWlerlapvrglierlKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADD 362
Cdd:PRK04863 400 ADYQQALDVQ--QTRAIQY--------------QQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 363 HLRQAQAPLR---EAFQL----ESEARRLERTLAERQELHRQSNQRH-AQQSDAARQLDMEQQRHVAEQAQLQAALRDSQ 434
Cdd:PRK04863 464 KLSVAQAAHSqfeQAYQLvrkiAGEVSRSEAWDVARELLRRLREQRHlAEQLQQLRMRLSELEQRLRQQQRAERLLAEFC 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 435 ALAALgdawathQGQLAAFVQRRQRALEsqAQLPELEKSLAQAGEPLERLQAQwaalhgsepddlaarLDELRRQTDSLE 514
Cdd:PRK04863 544 KRLGK-------NLDDEDELEQLQEELE--ARLESLSESVSEARERRMALRQQ---------------LEQLQARIQRLA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 515 RQQalhKEWQQALDQRTGLARRLGELD---QRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRqrlARSSSVE 591
Cdd:PRK04863 600 ARA---PAWLAAQDALARLREQSGEEFedsQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ---PGGSEDP 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 592 QLRA------GLVDGEACPVCGSQEHPYHQseqllAALGEhddqeqvrAEQA-----LERLRQTLVGLR---------EG 651
Cdd:PRK04863 674 RLNAlaerfgGVLLSEIYDDVSLEDAPYFS-----ALYGP--------ARHAivvpdLSDAAEQLAGLEdcpedlyliEG 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 652 yssQRERLNQSRQEQQELTGQLA--ALDRQLEQWTLPE---------ELRLLQPSAQLEWLAQRLDELAGQRQQCQR--- 717
Cdd:PRK04863 741 ---DPDSFDDSVFSVEELEKAVVvkIADRQWRYSRFPEvplfgraarEKRIEQLRAEREELAERYATLSFDVQKLQRlhq 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 718 DFDRLIARQRQTQQLQQELRAAETILQQRQQALTE----------QRQRYEHLQQQVeEDSQQLRP---LLSDEHWQrwq 784
Cdd:PRK04863 818 AFSRFIGSHLAVAFEADPEAELRQLNRRRVELERAladhesqeqqQRSQLEQAKEGL-SALNRLLPrlnLLADETLA--- 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 785 adplRTFQALGESIEQRRQQQARLQQVEQRLQELKQ-----RCDESSWQLKQSDEQRNEARQAEERVQA-ELAELNGRLg 858
Cdd:PRK04863 894 ----DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPivsvlQSDPEQFEQLKQDYQQAQQTQRDAKQQAfALTEVVQRR- 968
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 859 AHLGQHACAQDwqlslehaAQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWR----ERQ 934
Cdd:PRK04863 969 AHFSYEDAAEM--------LAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRqmlqELK 1040
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 657908800 935 DNLDDSRLDALLGLsEEQATQWREQL-QRLQEeiTRQQTLEAERQAQLLQHRRQRPETDREALEDNLRQQRE 1005
Cdd:PRK04863 1041 QELQDLGVPADSGA-EERARARRDELhARLSA--NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
107-537 |
7.74e-05 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 46.89 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 107 YRARWETRRSRDKADGALQKSQQSLQDLDTQQMLAANKKSEFREQLEQKLGLNFAQFTRAVLLAQSEFSAFLKASDNDRG 186
Cdd:COG4995 34 AAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAALALALAAAALAALALLAALL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 187 ALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFT 266
Cdd:COG4995 114 ALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAA 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 267 EEQRLLQSCEHAQGQLAEARQAWDALATERETLQWLERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGL 346
Cdd:COG4995 194 AAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAAL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 347 QARVQEARERQAQADDHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQL 426
Cdd:COG4995 274 AAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAAL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 427 QAALRDSQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEPDDLAARLDEL 506
Cdd:COG4995 354 ALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALL 433
|
410 420 430
....*....|....*....|....*....|....*.
gi 657908800 507 RR-----QTDSLERQQALHKEWQQALDQRTGLARRL 537
Cdd:COG4995 434 ALieyiiLPDRLYAFVQLYQLLIAPIEAELPGIKRL 469
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
738-1061 |
8.18e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 738 AAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHwqrwqadplRTFQALGESIEQRRQQQarlqqveQRLQE 817
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ---------LRVKEKIGELEAEIASL-------ERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 818 LKQRcdesswQLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLRE 897
Cdd:TIGR02169 312 EKER------ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 898 EQLRLAEALEHLQQQRQRQQDEFQRLQADWQAWRERQDNLddsrldallglseeqatqwREQLQRLQEEITRQQTLEAER 977
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL-------------------NAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 978 QAQLlqhrrqrpetdrEALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELE---RARAEFRRWGRLNEL 1054
Cdd:TIGR02169 447 ALEI------------KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEaqaRASEERVRGGRAVEE 514
|
....*..
gi 657908800 1055 IGSSSGD 1061
Cdd:TIGR02169 515 VLKASIQ 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1-847 |
2.75e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1 MKILAIRLKNLASLAgEQEIDFTReplssaGLFAITGPTGAGKSTVLDALCLALFGSTPRLESTsasskvpdgrneLSSN 80
Cdd:PRK03918 1 MKIEELKIKNFRSHK-SSVVEFDD------GINLIIGQNGSGKSSILEAILVGLYWGHGSKPKG------------LKKD 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 81 DernlLRRGCASGYAEVDFVGIDGHRYRarweTRRSRDKADGALQKSQQSLQDLDTQqmlaankkSEFREQLEQKLGLNF 160
Cdd:PRK03918 62 D----FTRIGGSGTEIELKFEKNGRKYR----IVRSFNRGESYLKYLDGSEVLEEGD--------SSVREWVERLIPYHV 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 161 aqFTRAVLLAQSEFSAFLKaSDNDRGALLEKLTDTGLYSQlskaAYQRASqadEQRKQLEQRLEgslplaeqaragleaA 240
Cdd:PRK03918 126 --FLNAIYIRQGEIDAILE-SDESREKVVRQILGLDDYEN----AYKNLG---EVIKEIKRRIE---------------R 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 241 LESHAQArlqEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEarqawdalateretlqwleRLAPVRGLIERLKQLEQ 320
Cdd:PRK03918 181 LEKFIKR---TENIEELIKEKEKELEEVLREINEISSELPELRE-------------------ELEKLEKEVKELEELKE 238
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 321 ELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERqaqaddhlrqaqapLREafqLESEARRLERtLAERQELHRQSNQ 400
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKE--------------IEE---LEEKVKELKE-LKEKAEEYIKLSE 300
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 401 RHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAAlgdawathqgQLAAFVQRRQRALESQAQLPELEKSLAQAGEP 480
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE----------RLEELKKKLKELEKRLEELEERHELYEEAKAK 370
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 481 LERLQAQWAALHGSEPDDLAARLDELRRQTDSLErqqalhkewqqalDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQ 560
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIE-------------EEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 561 CAeqVKAAEQALQVTRELLQRQRLARSSS----------VEQLRAGLVDGEACPVCGSQEHPYHQ-SEQLLAA---LGEH 626
Cdd:PRK03918 438 CP--VCGRELTEEHRKELLEEYTAELKRIekelkeieekERKLRKELRELEKVLKKESELIKLKElAEQLKELeekLKKY 515
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 627 DDQEQVRAEQALERLRQTLVGLRegysSQRERLNQSRQEQQELTGQLAALDRQLEqwTLPEELRLLQPS------AQLEW 700
Cdd:PRK03918 516 NLEELEKKAEEYEKLKEKLIKLK----GEIKSLKKELEKLEELKKKLAELEKKLD--ELEEELAELLKEleelgfESVEE 589
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 701 LAQRLDELagqrQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEdsqqLRPLLSDEHW 780
Cdd:PRK03918 590 LEERLKEL----EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE----LEKKYSEEEY 661
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 657908800 781 QRWQadplrtfqalgesiEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQ 847
Cdd:PRK03918 662 EELR--------------EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
209-438 |
2.88e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 209 ASQADEQRKQLEQRLEgslplaeQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQScehAQGQLAEARQA 288
Cdd:COG4942 15 AAAQADAAAEAEAELE-------QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA---LEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 289 WDALATERETLQwlERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQ 368
Cdd:COG4942 85 LAELEKEIAELR--AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 369 APLREafQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAA 438
Cdd:COG4942 163 AALRA--ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
353-573 |
3.06e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 353 ARERQAQADDHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMeqqrHVAEQAQLQAALRD 432
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLAL----AAGEAAAAAAALLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 433 SQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALH---GSEPDDLAARLDeLRRQ 509
Cdd:COG3914 77 LAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRralALNPDFAEAYLN-LGEA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 657908800 510 TDSLERQQALHKEWQQALDQRTGLA---RRLGeldqrmveqeQALLDLKRQgsqcAEQVKAAEQALQ 573
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAealNNLG----------NALQDLGRL----EEAIAAYRRALE 208
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1-586 |
3.17e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1 MKILAIRLKNLASLAgEQEIDFtreplsSAGLFAITGPTGAGKSTVLDALCLALFGstpRLESTSASSKVPDGRNELSSN 80
Cdd:COG4717 1 MKIKELEIYGFGKFR-DRTIEF------SPGLNVIYGPNEAGKSTLLAFIRAMLLE---RLEKEADELFKPQGRKPELNL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 81 DERNLLRrgcasgyaevdfvgidghryrarwETRRSRDKADGALQKSQQSLQDLDTQQMLAANKKSEFREQLEQklgLNF 160
Cdd:COG4717 71 KELKELE------------------------EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK---LEK 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 161 AQFTRAVLLAQSEFSAFLKASDNDRGALLEKLTDtglYSQLSKAAYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAA 240
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEE---LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 241 LESHAQARLQEQQALQRLEgqqqwfteeqrllQSCEHAQGQLAEArQAWDALATERETLQWLERLAPVRGLIERLKQLEQ 320
Cdd:COG4717 201 LEELQQRLAELEEELEEAQ-------------EELEELEEELEQL-ENELEAAALEERLKEARLLLLIAAALLALLGLGG 266
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 321 ELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQaplreafqlESEARRLERTLAERQELHRQSNQ 400
Cdd:COG4717 267 SLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE---------ELEEEELEELLAALGLPPDLSPE 337
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 401 RHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEP 480
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGE 417
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 481 LERLQAQWaalhgsEPDDLAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQ 560
Cdd:COG4717 418 LEELLEAL------DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEE 491
|
570 580
....*....|....*....|....*.
gi 657908800 561 CAEqVKAAEQALQVTRELLQRQRLAR 586
Cdd:COG4717 492 WAA-LKLALELLEEAREEYREERLPP 516
|
|
| ABC_SMC_barmotin |
cd03278 |
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
6-54 |
3.32e-04 |
|
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 43.22 E-value: 3.32e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 657908800 6 IRLKNLASLAGEQEIDFTReplssaGLFAITGPTGAGKSTVLDALCLAL 54
Cdd:cd03278 4 LELKGFKSFADKTTIPFPP------GLTAIVGPNGSGKSNIIDAIRWVL 46
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
738-1043 |
4.43e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 738 AAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSD-----EHWQRwqadpLRTFQALGESIEQRrqqqarlqqvE 812
Cdd:COG3096 289 ELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDyqaasDHLNL-----VQTALRQQEKIERY----------Q 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 813 QRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLG----AHLGQHACAQDWQ----------------- 871
Cdd:COG3096 354 EDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyqqALDVQQTRAIQYQqavqalekaralcglpd 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 872 LSLEHAAQAAQSAVETLQAPLDSLR--EEQLRLAEA----LEHLQQQRQRQQDEFQRLQAdWQAWRERQDNLDDSRLDAl 945
Cdd:COG3096 434 LTPENAEDYLAAFRAKEQQATEEVLelEQKLSVADAarrqFEKAYELVCKIAGEVERSQA-WQTARELLRRYRSQQALA- 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 946 lglseEQATQWREQLQRLQEEITRQQtlEAERQAQLLQHRRQRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADN 1025
Cdd:COG3096 512 -----QRLQQLRAQLAELEQRLRQQQ--NAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELR 584
|
330
....*....|....*...
gi 657908800 1026 QRREQSQALLAELeRARA 1043
Cdd:COG3096 585 QQLEQLRARIKEL-AARA 601
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
449-1046 |
4.86e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 449 QLAAFVQRRQRAleSQAQLPeLEKSLAQAGEPLERLQAQWAalhGSEPDDLAARLDELRRQTDSLERQ-QALHKEWQQAL 527
Cdd:PRK02224 160 QLGKLEEYRERA--SDARLG-VERVLSDQRGSLDQLKAQIE---EKEEKDLHERLNGLESELAELDEEiERYEEQREQAR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 528 DQRTGLARRLGELDQRMVE---QEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRQRLARSSSVEqlRAGLVDGEACP 604
Cdd:PRK02224 234 ETRDEADEVLEEHEERREEletLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA--EAGLDDADAEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 605 VCGSQEHPYHQSEQLlaalgeHDDQEQVRaeQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAAL-----DRQ 679
Cdd:PRK02224 312 VEARREELEDRDEEL------RDRLEECR--VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAreaveDRR 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 680 LEQWTLPEELRLLQPS-----AQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRA---------------- 738
Cdd:PRK02224 384 EEIEELEEEIEELRERfgdapVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecgqpveg 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 739 ---AETILQQRQQA--LTEQRQRYEHLQQQVEEDSQQLRPLLSDEHwqrwQADPLR-TFQALGESIEQRRQQQARLqqvE 812
Cdd:PRK02224 464 sphVETIEEDRERVeeLEAELEDLEEEVEEVEERLERAEDLVEAED----RIERLEeRREDLEELIAERRETIEEK---R 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 813 QRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNGRLGAHlgqhacaqdwqlsleHAAQAAQSAVETLQAPL 892
Cdd:PRK02224 537 ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL---------------KERIESLERIRTLLAAI 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 893 DSLREEQLRLAEALEHLQQQRQRQQDefqRLQADWQAWRERQDNLDDSRLdallglseEQATQWREQLQRLQEEITRQ-Q 971
Cdd:PRK02224 602 ADAEDEIERLREKREALAELNDERRE---RLAEKRERKRELEAEFDEARI--------EEAREDKERAEEYLEQVEEKlD 670
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 657908800 972 TLEAERQAqlLQHRRQRPETDREALEDnLRQQRERLAtseqaylDTYSQLQADNQRREQSQALLAELeraRAEFR 1046
Cdd:PRK02224 671 ELREERDD--LQAEIGAVENELEELEE-LRERREALE-------NRVEALEALYDEAEELESMYGDL---RAELR 732
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
6-117 |
4.87e-04 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 43.88 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 6 IRLKNLASLAGEQEIDFTREPLSSAGLFAITGPTGAGKSTVLDALclalfgstprlesTSASSKVPDGRNELSSNDERNL 85
Cdd:COG1106 5 FSIENFRSFKDELTLSMVASGLRLLRVNLIYGANASGKSNLLEAL-------------YFLRNLVLNSSQPGDKLVEPFL 71
|
90 100 110
....*....|....*....|....*....|....
gi 657908800 86 LRRGCASGYA--EVDFVgIDGHRYRARWETRRSR 117
Cdd:COG1106 72 LDSESKNEPSefEILFL-LDGVRYEYGFELDKER 104
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
204-441 |
6.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 204 AAYQRASQADEQRKQLEQRL---EGSLPLAEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQscehaqg 280
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIaelEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 281 qlAEARQAWDALATERETLQWLERLAPVRGLIERLKQL-----EQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARE 355
Cdd:COG4942 90 --KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLlspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 356 RQAQADDHLRQAQAplreafQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQA 435
Cdd:COG4942 168 ELEAERAELEALLA------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....*.
gi 657908800 436 LAALGD 441
Cdd:COG4942 242 RTPAAG 247
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
594-1169 |
6.31e-04 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 44.09 E-value: 6.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 594 RAGLVDGEACPVCGSQEHPYHQSEQLLAALGE-----HD-DQEQVRAEQALERlrqtlVGLReGYSSQRERLNQSRQEQQ 667
Cdd:COG3321 808 RQCLAAAGDAVVLPSLRRGEDELAQLLTALAQlwvagVPvDWSALYPGRGRRR-----VPLP-TYPFQREDAAAALLAAA 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 668 ELTGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQ 747
Cdd:COG3321 882 LAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALAAAAAAAAAALAAAEA 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 748 QALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPLRTFQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSW 827
Cdd:COG3321 962 GALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAA 1041
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 828 QLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALE 907
Cdd:COG3321 1042 AAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALAAALLLLALLAALALAAAA 1121
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 908 HLQQQRQRQQDEFQRLQADWQAWRERQDNLDDSRLDALLGLSEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQ 987
Cdd:COG3321 1122 AALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAAALAAALAGLAALLLAALL 1201
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 988 RPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRRWGRLNELIGSSSGDKFRRIA 1067
Cdd:COG3321 1202 AALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALALLAAAAGLAALAAAAAAA 1281
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 1068 QGYNLDLLVQHSNVQLRQLARRYRLQRGGSeLGLLVVDTEMGDELRSVYSLSGGETFLISLALALGLASMASSKLRIESL 1147
Cdd:COG3321 1282 AAALALAAAAAAAAAALAALLAAAAAAAAA-AAAAAAAAALAAALLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAA 1360
|
570 580
....*....|....*....|..
gi 657908800 1148 FIDEGFGSLDPESLQLAMDALD 1169
Cdd:COG3321 1361 AALAAAAGAAAAAAALALAALA 1382
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
828-1060 |
6.53e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 828 QLKQSDEQRNEARQAEERVQAELAELNGRLGAHLGQHACAQDWqLSLEHAAQAAQSAVETLQAPLDSL----REEQLRLA 903
Cdd:COG3096 293 ELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDH-LNLVQTALRQQEKIERYQEDLEELterlEEQEEVVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 904 EALEHLQQQRQRQQ---DEFQRLQ---ADWQ-----------AWRERQDNLDDSR-LDALLGLSEEQATQWREQLQRLQE 965
Cdd:COG3096 372 EAAEQLAEAEARLEaaeEEVDSLKsqlADYQqaldvqqtraiQYQQAVQALEKARaLCGLPDLTPENAEDYLAAFRAKEQ 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 966 EITrQQTLEAERQAQLLQHRRQRPETDREALEdNLRQQRERLATSEQA--YLDTYSQLQADNQRREQSQALLAELERARA 1043
Cdd:COG3096 452 QAT-EEVLELEQKLSVADAARRQFEKAYELVC-KIAGEVERSQAWQTAreLLRRYRSQQALAQRLQQLRAQLAELEQRLR 529
|
250
....*....|....*..
gi 657908800 1044 EFRRWGRLNELIGSSSG 1060
Cdd:COG3096 530 QQQNAERLLEEFCQRIG 546
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
6-1047 |
6.85e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 6.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 6 IRLKNLASLAGEQEIDFTReplssaGLFAITGPTGAGKSTVLDALCLALFgstprlESTSASSKVPDGRNELSSNDERNL 85
Cdd:pfam02463 5 IEIEGFKSYAKTVILPFSP------GFTAIVGPNGSGKSNILDAILFVLG------ERSAKSLRSERLSDLIHSKSGAFV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 86 LrrgcaSGYAEVDFVGIDGHRYRARWETRRSRDKAdgalqKSQQSLQDLDTQQMLAANKKSEFREQLEQKLGLNFaqftr 165
Cdd:pfam02463 73 N-----SAEVEITFDNEDHELPIDKEEVSIRRRVY-----RGGDSEYYINGKNVTKKEVAELLESQGISPEAYNF----- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 166 avLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQ----RASQADEQRKQLEQRLEgSLPLAEQARAGLeaal 241
Cdd:pfam02463 138 --LVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKlieeTENLAELIIDLEELKLQ-ELKLKEQAKKAL---- 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 242 eshaqaRLQEQQALQRLEGQQQWFTEEQRLLQSCEHAQGQLAEARQAWDALATERETlqwlerlapvrgLIERLKQLEQE 321
Cdd:pfam02463 211 ------EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIE------------KEEEKLAQVLK 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 322 LRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDhlrqaqaplREAFQLESEARRLERTLAERQELhrQSNQR 401
Cdd:pfam02463 273 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE---------EKLKESEKEKKKAEKELKKEKEE--IEELE 341
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 402 HAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPL 481
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 482 ERLQAQWAALHGSEPDDLAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQ- 560
Cdd:pfam02463 422 KEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQk 501
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 561 --CAEQVKAAEQALQVTRELLQRQRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQ---SEQLLAALGEHDDQEQVRAE 635
Cdd:pfam02463 502 esKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADeveERQKLVRALTELPLGARKLR 581
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 636 QALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAA-------LDRQLEQWTLPEELRLLQPSAQLEWLAQRLDEL 708
Cdd:pfam02463 582 LLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvvegiLKDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 709 AGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRWQADPL 788
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLL 741
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 789 RTFQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAELNgrlgAHLGQHACAQ 868
Cdd:pfam02463 742 KQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALE----EELKEEAELL 817
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 869 DWQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALEHLQQQRQRQQDEFQRLQADwQAWRERQDNLDDSRLDALLGL 948
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK-EEELEEQKLKDELESKEEKEK 896
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 949 SEEQATQWREQLQRLQEEITRQQTLEAERQAQLLQHRRQRPETDR-------EALEDNLRQQRERLATSEQAY------- 1014
Cdd:pfam02463 897 EEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLleeadekEKEENNKEEEEERNKRLLLAKeelgkvn 976
|
1050 1060 1070
....*....|....*....|....*....|...
gi 657908800 1015 LDTYSQLQADNQRREQSQALLAELERARAEFRR 1047
Cdd:pfam02463 977 LMAIEEFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1113-1183 |
9.38e-04 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 42.07 E-value: 9.38e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 657908800 1113 RSVYSLSGGETFLISLALALglasMASSKLriesLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISH 1183
Cdd:cd03225 130 RSPFTLSGGQKQRVAIAGVL----AMDPDI----LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTH 192
|
|
| ABC_RecN |
cd03241 |
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC ... |
6-56 |
1.06e-03 |
|
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213208 [Multi-domain] Cd Length: 276 Bit Score: 42.57 E-value: 1.06e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 657908800 6 IRLKNLAsLAGEQEIDFtreplsSAGLFAITGPTGAGKSTVLDALcLALFG 56
Cdd:cd03241 4 LSIKNFA-LIEELELDF------EEGLTVLTGETGAGKSILLDAL-SLLLG 46
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
365-758 |
1.09e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 365 RQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDmEQQRHVAEQAQLQAALRDSQALAALGDAWA 444
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE-ELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 445 THQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEPDDLAARLDELRRQTDSLERQQALHKEWQ 524
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 525 QALDQRTGLARRLGELDQRMVEQEQALLDLK----------------------------RQGSQCAEQVKAAEQALQVTR 576
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLiaaallallglggsllsliltiagvlflVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 577 ELLQRQRLARSSSVEQLR-AGLVDGEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQ 655
Cdd:COG4717 303 EAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 656 -----RERLNQSrQEQQELTGQLAALDRQLEQwtLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRL---IARQR 727
Cdd:COG4717 383 deeelRAALEQA-EEYQELKEELEELEEQLEE--LLGELEELLEALDEEELEEELEELEEELEELEEELEELreeLAELE 459
|
410 420 430
....*....|....*....|....*....|.
gi 657908800 728 QTQQLQQELRAAETILQQRQQALTEQRQRYE 758
Cdd:COG4717 460 AELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
230-432 |
1.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 230 AEQARAGLEAALESHAQARLQEQQALQRLEGQQQWFTEEQRLLQSCEhaqgQLAEARQAWDALATERETLQwlERLAPVR 309
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA----EYSWDEIDVASAEREIAELE--AELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 310 GLIERLKQLEQELRhseqqqrQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREAFQLESEARRLErtLA 389
Cdd:COG4913 682 ASSDDLAALEEQLE-------ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL--LE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 657908800 390 ERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRD 432
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
309-1040 |
1.22e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 309 RGLIERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREAFQLE---SEARRLE 385
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIEryqEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 386 RTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALrdsqalaalgDAWATHQGQLAAFVQRRQRAlESQA 465
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL----------DVQQTRAIQYQQAVQALEKA-RALC 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 466 QLPELekSLAQAGEPLERLQAQWAALHG---------SEPDDLAARLDE----LRRQTDSLERQQAL---------HKEW 523
Cdd:COG3096 430 GLPDL--TPENAEDYLAAFRAKEQQATEevleleqklSVADAARRQFEKayelVCKIAGEVERSQAWqtarellrrYRSQ 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 524 QQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQalqvTRELLQRQRLARSSSVEQLRAGLVDGEAC 603
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVEQRSEL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 604 pvcgsqehpYHQSEQLLAALGEHDDQEQV--RAEQALERLRQ-------TLVGLREGYSSQRERLNQSRQEQQELTGQLA 674
Cdd:COG3096 584 ---------RQQLEQLRARIKELAARAPAwlAAQDALERLREqsgealaDSQEVTAAMQQLLEREREATVERDELAARKQ 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 675 ALDRQLEqwtlpeelRLLQPS----AQLEWLAQRL---------------------------------DELAGQRQQ--- 714
Cdd:COG3096 655 ALESQIE--------RLSQPGgaedPRLLALAERLggvllseiyddvtledapyfsalygparhaivvPDLSAVKEQlag 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 715 ----------CQRDFDrliARQRQTQQLQQELRAAETILQQRQQALTE-----------QRQRYEHLQQQVEEDSQQLRP 773
Cdd:COG3096 727 ledcpedlylIEGDPD---SFDDSVFDAEELEDAVVVKLSDRQWRYSRfpevplfgraaREKRLEELRAERDELAEQYAK 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 774 LLSDEhwQRWQadplRTFQALGESIeQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEARQAEERVQAELAEL 853
Cdd:COG3096 804 ASFDV--QKLQ----RLHQAFSQFV-GGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLL 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 854 NGRLG-AHLgqhacaqdwqLSLEHAAQAAQSAVETLQAPLDSLREEQL--RLAEALEHLQQQRQRQQDEFQRLQADWQAW 930
Cdd:COG3096 877 NKLLPqANL----------LADETLADRLEELREELDAAQEAQAFIQQhgKALAQLEPLVAVLQSDPEQFEQLQADYLQA 946
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 931 RERQDNLDdSRLDALlglseEQATQWREQL--QRLQEEITRQQTLEAERQAQLLQHRRQRpetdrealednlRQQRERLA 1008
Cdd:COG3096 947 KEQQRRLK-QQIFAL-----SEVVQRRPHFsyEDAVGLLGENSDLNEKLRARLEQAEEAR------------REAREQLR 1008
|
810 820 830
....*....|....*....|....*....|..
gi 657908800 1009 TSEQAYLDTYSQLQADNQRREQSQALLAELER 1040
Cdd:COG3096 1009 QAQAQYSQYNQVLASLKSSRDAKQQTLQELEQ 1040
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
1-54 |
1.39e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 42.30 E-value: 1.39e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 657908800 1 MKILAIRLKNLASLaGEQEIDFtreplsSAGLFAITGPTGAGKSTVLDALCLAL 54
Cdd:COG3593 1 MKLEKIKIKNFRSI-KDLSIEL------SDDLTVLVGENNSGKSSILEALRLLL 47
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
257-642 |
1.76e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 42.70 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 257 RLEGQQQWFTEEQRLLQSCEHAQGQLAEARQAWDALATERETLQWLERLAPVRGLIERLKQLEQELRHSEQQQRQRTEQQ 336
Cdd:COG3903 546 RLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLL 625
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 337 AAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQ 416
Cdd:COG3903 626 LAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAA 705
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 417 QRHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEP 496
Cdd:COG3903 706 AAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAA 785
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 497 DDLAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTR 576
Cdd:COG3903 786 LAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAA 865
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 657908800 577 ELLQRQRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLR 642
Cdd:COG3903 866 AAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAAAAAA 931
|
|
| Ras_like_GTPase |
cd00882 |
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ... |
34-124 |
2.01e-03 |
|
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.
Pssm-ID: 206648 [Multi-domain] Cd Length: 161 Bit Score: 40.13 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 34 AITGPTGAGKSTVLDALCLALFGSTPRLESTSASSKVpdGRNELSSNDERNLLrrgcasgyaeVDFVGI-DGHRYRARWE 112
Cdd:cd00882 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVL----------VDTPGLdEFGGLGREEL 68
|
90
....*....|..
gi 657908800 113 TRRSRDKADGAL 124
Cdd:cd00882 69 ARLLLRGADLIL 80
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
500-1044 |
2.52e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 2.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 500 AARLDELRRQTDSLERQQALHKEwqqaLDQRTGLARRLGelDQRMVEQEQALLDLKR-QGSQCAEQVKAAEQALQV--TR 576
Cdd:PTZ00121 1127 ARKAEEARKAEDARKAEEARKAE----DAKRVEIARKAE--DARKAEEARKAEDAKKaEAARKAEEVRKAEELRKAedAR 1200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 577 ELLQRQRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLLAalgehddqEQVRAEQALERLRQTlvglREGYSSQR 656
Cdd:PTZ00121 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKA--------EEERNNEEIRKFEEA----RMAHFARR 1268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 657 ERLNQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLI-----------AR 725
Cdd:PTZ00121 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKkkaeeakkaaeAA 1348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 726 QRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEEDSQQLRPLLSDEHWQRwQADPLRTFQALGESIEQRRQQQ 805
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK-KADELKKAAAAKKKADEAKKKA 1427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 806 ARLQQVEQ---------RLQELKQRCDES--SWQLKQSDEQRNEA----RQAEERVQAE----LAELNGRLGAHLGQHAC 866
Cdd:PTZ00121 1428 EEKKKADEakkkaeeakKADEAKKKAEEAkkAEEAKKKAEEAKKAdeakKKAEEAKKADeakkKAEEAKKKADEAKKAAE 1507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 867 AQDWQLSLEHA-----AQAAQSAVETLQAplDSLRE-------EQLRLAEAL---EHLQQQRQRQQDEFQRLQADWQAWR 931
Cdd:PTZ00121 1508 AKKKADEAKKAeeakkADEAKKAEEAKKA--DEAKKaeekkkaDELKKAEELkkaEEKKKAEEAKKAEEDKNMALRKAEE 1585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 932 ERQdnLDDSRLDALLGLSEEQATQWREQLQRLQEEITRQQTL--EAERQAQLLQHRRQRPETDREALEDNLRQQRERLAT 1009
Cdd:PTZ00121 1586 AKK--AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
570 580 590
....*....|....*....|....*....|....*
gi 657908800 1010 SEQAYLDTYSQLQADNQRREQSQALLAELERARAE 1044
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
|
| EntF |
COG1020 |
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites ... |
444-860 |
2.88e-03 |
|
EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 440643 [Multi-domain] Cd Length: 1329 Bit Score: 42.15 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 444 ATHQGQLAAF-VQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEPDDLAARLDELRRQTDSLERQQALHKE 522
Cdd:COG1020 909 APGDKRLVAYvVPEAGAAAAAALLRLALALLLPPYMVPAAVVLLLPLPLTGNGKLDRLALPAPAAAAAAAAAAPPAEEEE 988
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 523 WQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQ---ALQVTRELLQRQRLARSSSVEQLRAGLVD 599
Cdd:COG1020 989 EEAALALLLLLVVVVGDDDFFFFGGGLGLLLLLALARAARLLLLLLLLlllFLAAAAAAAAAAAAAAAAAAAAPLAAAAA 1068
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 600 GEACPVCGSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQ 679
Cdd:COG1020 1069 PLPLPPLLLSLLALLLALLLLLALLALLALLLLLLLLLLLLALLLLLALLLALLAALRARRAVRQEGPRLRLLVALAAAL 1148
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 680 LEQWTLPEELRLLQPSAQLEWLAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEH 759
Cdd:COG1020 1149 ALAALLALLLAAAAAAAELLAAAALLLLLALLLLALLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLAAAA 1228
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 760 LQQQVEEDSQQLRPLLSDEHWQRWQADPLRTFQALGESIEQRRQQQARLQQVEQRLQELKQRCDESSWQLKQSDEQRNEA 839
Cdd:COG1020 1229 AALLALALLLALLALAALLALAALAALAAALLALALALLALALLLLALALLLPALARARAARTARALALLLLLALLLLLA 1308
|
410 420
....*....|....*....|.
gi 657908800 840 RQAEERVQAELAELNGRLGAH 860
Cdd:COG1020 1309 LALALLLLLLLLLALLLLALL 1329
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1118-1191 |
2.98e-03 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 40.07 E-value: 2.98e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 657908800 1118 LSGGETFLISLALALglasMASSKLriesLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISHVQEMHERI 1191
Cdd:cd03230 96 LSGGMKQRLALAQAL----LHDPEL----LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
166-411 |
3.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 166 AVLLAQSEFSAFLKASDNDRGALLEKLTDTGLYSQLSKAAYQRASQADEQRKQLEQRLEGSLPLAEQARAGLEAALESHA 245
Cdd:COG4942 7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 246 QARLQEQQALQRLEGQQQWFTEEQRLLQScEHAQGQLAEARQAWDALATEReTLQWLERLAPVR-GLIERLKQLEQELRH 324
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFLDAVR-RLQYLKYLAPARrEQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 325 SEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLR-EAFQLESEARRLERTLAERQELHRQSNQRHA 403
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
....*...
gi 657908800 404 QQSDAARQ 411
Cdd:COG4942 245 AAGFAALK 252
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
252-709 |
3.44e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 252 QQALQRLEGQQQWFTEEQRLLQSCEHaqgQLAEARQAWDALATERETLQWLERLAPVRGLIERLKQLEQELRHSEQQQRQ 331
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEE---ELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 332 RTEQQAAGAERLQGLQARVQEARERQAQAddhlrQAQAPLREAFQLESEARRLERTLAERQELHRQSNQRHAQQSDAARQ 411
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEEL-----LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 412 LDMEQQRHVAEQAQLQAALRDSQALAAlgdawathqGQLAAFVQRRQRALESQAQLPELEKSLAQAGEPLERLQAQWAAL 491
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLIA---------AALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 492 HGSEPDDLAARLDELRRQTDSLERQ-QALHKEWQQALDQRTGLARRLGELDQRMVEQEQALLDLKRQGSQcAEQVKAAEQ 570
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELlAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE-QEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 571 ALQVTRELLqRQRLARSSSVEQLRAglvdgeacpvcgsqehpyhQSEQLLAALGEHDDQEQVRAEQAlerlrqTLVGLRE 650
Cdd:COG4717 379 AGVEDEEEL-RAALEQAEEYQELKE-------------------ELEELEEQLEELLGELEELLEAL------DEEELEE 432
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 657908800 651 GYSSQRERLNQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQpsAQLEWLAQRLDELA 709
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELL--QELEELKAELRELA 489
|
|
| ABC_SMC5_euk |
cd03277 |
ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of ... |
3-97 |
4.53e-03 |
|
ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213244 [Multi-domain] Cd Length: 213 Bit Score: 39.89 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 3 ILAIRLKNLASLAgeqEIDFTREPlssaGLFAITGPTGAGKSTVLDALCLALFGSTPRLestsasskvpdGRnelsSNDE 82
Cdd:cd03277 3 IVRIKLENFVTYD---ETEFRPGP----SLNMIIGPNGSGKSSIVCAICLGLGGKPKLL-----------GR----AKKV 60
|
90
....*....|....*
gi 657908800 83 RNLLRRGCASGYAEV 97
Cdd:cd03277 61 GEFVKRGCDEGTIEI 75
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
34-705 |
4.59e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 34 AITGPTGAGKSTVLDALCLAL--------FGSTPRLESTSASS-KVPDGRnelssndernlLRRGCAsgYAEVDFVGIDG 104
Cdd:COG3096 30 TLSGGNGAGKSTTMAAFVTALipdltllhFRNTTEAGATSGSRdKGLHGK-----------LKPGVC--YAALDVVNSRG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 105 HRYRA--RWETRRSRDKADG----ALQ--KSQQSLQDLDTQQMLAANKK----SEFREQLEQKLGLNFAQFTRAvllaqS 172
Cdd:COG3096 97 QRLLVgvRLQQVAGRDKKVDikpfIIQglPEDVKPTDLLTETLDGRQARvlplNELKEKAEELEGVQFKQFNSI-----T 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 173 EFSAFLkasdNDRGALLEKLTDtglysqlskaayqrasqaDEQRKQLEQRLEGSLplaeqaRAGLEAALESHAQARLQEQ 252
Cdd:COG3096 172 DYHAFM----FDLGVTPKRLRS------------------SSDRSKFYRLIEASL------YGGISSAITRSLRDYLLPE 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 253 -----QALQRLEG---QQQWFTEEQRLLQSCEHAQGQLAEARQAWDALAteretlqWLERLAPVRGLIERLKQLEQELRH 324
Cdd:COG3096 224 nsgvrKAFQDMEAalrENRMTLEAIRVTQSDRDLFKHLITEATNYVAAD-------YMRHANERRELSERALELRRELFG 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 325 SEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREAFQLE---SEARRLERTLAERQELHRQSNQR 401
Cdd:COG3096 297 ARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKIEryqEDLEELTERLEEQEEVVEEAAEQ 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 402 HAQQSDAARQLDMEQQRHVAEQAQLQAALrdsqalaalgDAWATHQGQLAAFVQRRQRAlESQAQLPELekSLAQAGEPL 481
Cdd:COG3096 377 LAEAEARLEAAEEEVDSLKSQLADYQQAL----------DVQQTRAIQYQQAVQALEKA-RALCGLPDL--TPENAEDYL 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 482 ERLQAQWAALHG---------SEPDDLAARLDE----LRRQTDSLERQQAL---------HKEWQQALDQRTGLARRLGE 539
Cdd:COG3096 444 AAFRAKEQQATEevleleqklSVADAARRQFEKayelVCKIAGEVERSQAWqtarellrrYRSQQALAQRLQQLRAQLAE 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 540 LDQRMVEQEQALLDLKRQGSQCAEQVKAAEQalqvTRELLQRQRLARSSSVEQLRAGLVDGEACpvcgsqehpYHQSEQL 619
Cdd:COG3096 524 LEQRLRQQQNAERLLEEFCQRIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVEQRSEL---------RQQLEQL 590
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 620 LAALGEHDDQEQV--RAEQALERLRQ-------TLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEqwtlpeelR 690
Cdd:COG3096 591 RARIKELAARAPAwlAAQDALERLREqsgealaDSQEVTAAMQQLLEREREATVERDELAARKQALESQIE--------R 662
|
730
....*....|....*....
gi 657908800 691 LLQPS----AQLEWLAQRL 705
Cdd:COG3096 663 LSQPGgaedPRLLALAERL 681
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
895-1047 |
5.41e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 40.60 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 895 LREEQLRLAEAlehlqqQRQRQQDEFQRLQADWQAWRERQDNLDdsrldallglSEEQATQWREQLQRLQEEITRqqtLE 974
Cdd:COG3524 174 AREDAVRFAEE------EVERAEERLRDAREALLAFRNRNGILD----------PEATAEALLQLIATLEGQLAE---LE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 975 AERQAQLLQHRRQRP-----ETDREALEDNLRQQRERLA--TSEQAY---LDTYSQLQADNQRREQS-QALLAELERARA 1043
Cdd:COG3524 235 AELAALRSYLSPNSPqvrqlRRRIAALEKQIAAERARLTgaSGGDSLaslLAEYERLELEREFAEKAyTSALAALEQARI 314
|
....
gi 657908800 1044 EFRR 1047
Cdd:COG3524 315 EAAR 318
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
381-749 |
5.77e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 41.16 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 381 ARRLERTLAERQELHRQSNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALRDSQALAALGDAWATHQGQLAAFVQRRQRA 460
Cdd:COG3903 565 RRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 461 LESQAQLPELEKSLAQAGEPLERLQAQWAALHGSEPDDLAARLDELRRQTDSLERQQALHKEWQQALDQRTGLARRLGEL 540
Cdd:COG3903 645 AAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAA 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 541 DQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRQRLARSSSVEQLRAGLVDGEACPVCGSQEHPYHQSEQLL 620
Cdd:COG3903 725 AALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAA 804
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 621 AALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEQWTLPEELRLLQPSAQLEW 700
Cdd:COG3903 805 AAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAAL 884
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 657908800 701 LAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQA 749
Cdd:COG3903 885 LAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAAAAAAAA 933
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
313-516 |
6.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 313 ERLKQLEQELRHSEQQQRQRTEQQAAGAERLQGLQARVQEARERQAQADDHLRQAQAPLREafqLESEARRLERTLAERQ 392
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE---LEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 393 ELHRQ---SNQRHAQQSDAARQLDMEQQRHVAEQAQLQAALrdSQALAALGDAWATHQGQLAafvQRRQRALESQAQLPE 469
Cdd:COG4942 104 EELAEllrALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYL--APARREQAEELRADLAELA---ALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 657908800 470 LEKSLAQAGEPLERLQAQWAALHGSEPDDLA---ARLDELRRQTDSLERQ 516
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAelaAELAELQQEAEELEAL 228
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1113-1186 |
6.35e-03 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 40.22 E-value: 6.35e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 657908800 1113 RSVYSLSGGETFLISLALALGLASmassklriESLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISHVQE 1186
Cdd:PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQP--------EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1113-1183 |
6.41e-03 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 39.62 E-value: 6.41e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 657908800 1113 RSVYSLSGGETFLISLALALglaSMASsklriESLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISH 1183
Cdd:COG1122 130 RPPHELSGGQKQRVAIAGVL---AMEP-----EVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTH 192
|
|
| ABC_SMC4_euk |
cd03274 |
ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of ... |
3-56 |
6.74e-03 |
|
ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Pssm-ID: 213241 [Multi-domain] Cd Length: 212 Bit Score: 39.59 E-value: 6.74e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 657908800 3 ILAIRLKNLASLAGEQEI-----DFTreplssaglfAITGPTGAGKSTVLDALcLALFG 56
Cdd:cd03274 3 ITKLVLENFKSYAGEQVIgpfhkSFS----------AIVGPNGSGKSNVIDSM-LFVFG 50
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
18-55 |
6.88e-03 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 38.77 E-value: 6.88e-03
10 20 30
....*....|....*....|....*....|....*...
gi 657908800 18 QEIDFTrepLSSAGLFAITGPTGAGKSTVLDALCLALF 55
Cdd:cd00267 16 DNVSLT---LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
448-1048 |
7.28e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 448 GQLAAFVQRRQRALESQAQLPELEKsLAQAGEPLERLQAQWAALHGsepddlaARLDELRRQTDSLERQQALHKEWQQAL 527
Cdd:pfam12128 221 QQVEHWIRDIQAIAGIMKIRPEFTK-LQQEFNTLESAELRLSHLHF-------GYKSDETLIASRQEERQETSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 528 DQRTG-LARRLGELDQRMVEQEQALLDLKRQGSQCAEQVKAAEQALQVTRELLQRQRLARSSSVEQLRAGLVDGEacpvc 606
Cdd:pfam12128 293 RTLDDqWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALT----- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 607 GSQEHPYHQSEQLLAALGEHDDQEQVRAEQALERLRQTLVGLREGYSSQRERLNQSRQEQQElTGQLAALDRQLEQWTLP 686
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLE-AGKLEFNEEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 687 EELRLLQPSAQLEwlAQRLDELAGQRQQCQRDFDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVEE 766
Cdd:pfam12128 447 GELKLRLNQATAT--PELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 767 DSQQLRPLL-SDEHWQRWQADPLRtfQALGESIEQRRQQQARLQQV---EQRLQELK--------QRCDESSWqLKQSDE 834
Cdd:pfam12128 525 LELQLFPQAgTLLHFLRKEAPDWE--QSIGKVISPELLHRTDLDPEvwdGSVGGELNlygvkldlKRIDVPEW-AASEEE 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 835 QRNEARQAEERVQAElAELNGRLGAHLGQHACAQD-WQLSLEHAAQAAQSAVETLQAPLDSLREEQLRLAEALEHlqqqr 913
Cdd:pfam12128 602 LRERLDKAEEALQSA-REKQAAAEEQLVQANGELEkASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE----- 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 914 qrqqdefqrlqadwqawRERQDNLDDSRLDALLGLSEEQATQWREQLQRLQEEITRQ-----QTLEAERQAQL--LQHRR 986
Cdd:pfam12128 676 -----------------RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEkqaywQVVEGALDAQLalLKAAI 738
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 657908800 987 QRPETDREALEDNLRQQRERLATSEQAYLDTYSQLQADNQRREQSQALLAELERARAEFRRW 1048
Cdd:pfam12128 739 AARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDW 800
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
626-1002 |
7.89e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 626 HDDQEQVRAEQALErLRQTLVGLREGYSSQRERLNQSRQEQQELTGQLAALDRQLEqwTLPEELRLLQPSAQ-------- 697
Cdd:COG3096 276 HANERRELSERALE-LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQ--AASDHLNLVQTALRqqekiery 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 698 ---LEWLAQRLDELAGQRQQCQrdfDRLIARQRQTQQLQQELRAAETILQQRQQALTEQRQRYEHLQQQVE--EDSQQL- 771
Cdd:COG3096 353 qedLEELTERLEEQEEVVEEAA---EQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQalEKARALc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 772 -RPLLSDEHWQRWQAdplrTFQAlgesieqrrqqqaRLQQVEQRLQELKQRcdesswqLKQSDEQRNEARQAEERVQAEL 850
Cdd:COG3096 430 gLPDLTPENAEDYLA----AFRA-------------KEQQATEEVLELEQK-------LSVADAARRQFEKAYELVCKIA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 851 AELNgRLGAHLGQHACAQDWQlslEHAAQAAQsaVETLQAPLDSLR------EEQLRLAEALEHLQQQRQRQQDEFQRLQ 924
Cdd:COG3096 486 GEVE-RSQAWQTARELLRRYR---SQQALAQR--LQQLRAQLAELEqrlrqqQNAERLLEEFCQRIGQQLDAAEELEELL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 925 ADWQAWRER-QDNLDDSR---------LDALLGLSEE---QATQWR---EQLQRLQEEI------------TRQQTLEAE 976
Cdd:COG3096 560 AELEAQLEElEEQAAEAVeqrselrqqLEQLRARIKElaaRAPAWLaaqDALERLREQSgealadsqevtaAMQQLLERE 639
|
410 420
....*....|....*....|....*.
gi 657908800 977 RQAQLLqhrRQRPETDREALEDNLRQ 1002
Cdd:COG3096 640 REATVE---RDELAARKQALESQIER 662
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1113-1183 |
7.95e-03 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 39.05 E-value: 7.95e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 657908800 1113 RSVYSLSGGETFLISLALALglASMAssKLriesLFIDEGFGSLDPESLQLAMDALDNLQAQGRKVAVISH 1183
Cdd:cd03235 128 RQIGELSGGQQQRVLLARAL--VQDP--DL----LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
484-778 |
8.08e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 484 LQAQWAALHGSEP----DDLAARLDELRRQTDSLERQQALHKEWQQALDQrtglarrlgeLDQRMvEQEQALLDLKRQGS 559
Cdd:PRK11281 22 LSSAFARAASNGDlpteADVQAQLDALNKQKLLEAEDKLVQQDLEQTLAL----------LDKID-RQKEETEQLKQQLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 560 QCAEQVKAAEQALQVTRELLQ---RQRLArSSSVEQLRAGLVDGEAcpvcgsqehpyhQSEQLLAALGEHDDQ------- 629
Cdd:PRK11281 91 QAPAKLRQAQAELEALKDDNDeetRETLS-TLSLRQLESRLAQTLD------------QLQNAQNDLAEYNSQlvslqtq 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657908800 630 -EQVRAE-----QALERLRQTLVGLREGyssqRERLNQSRQEQqeLTGQLAALDRQLEQwtlpeELRLLQPSAQLEWLAQ 703
Cdd:PRK11281 158 pERAQAAlyansQRLQQIRNLLKGGKVG----GKALRPSQRVL--LQAEQALLNAQNDL-----QRKSLEGNTQLQDLLQ 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 657908800 704 -RLDELAGQRQQCQrdfdrliarqrqtqqlqQELRAAETILQQRQQALTEqrQRYEHLQQQVEEDSQQLRPLLSDE 778
Cdd:PRK11281 227 kQRDYLTARIQRLE-----------------HQLQLLQEAINSKRLTLSE--KTVQEAQSQDEAARIQANPLVAQE 283
|
|
|