|
Name |
Accession |
Description |
Interval |
E-value |
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1-760 |
5.05e-69 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 241.07 E-value: 5.05e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 1 MNSEQETTylRGEENELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLIKDNTKGGGLSESAafee 80
Cdd:COG3206 1 MNESSSAP--PEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLS---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 81 lNMFNVKSNVDNEVLVFKSKRLMSIVAERLNLDigytvkeglrtvelytQSPIAVQFPEAEATQAF--SLNVTPLTETev 158
Cdd:COG3206 75 -SLSASDSPLETQIEILKSRPVLERVVDKLNLD----------------EDPLGEEASREAAIERLrkNLTVEPVKGS-- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 159 mlsdfstdetkmlkvvlndtvitsigklvvtptlyysdkyfgkpvavvkknrvdvalgysntlqvalasktaTIINLTLQ 238
Cdd:COG3206 136 ------------------------------------------------------------------------NVIEISYT 143
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 239 DVSIPRAEDVLNMLIAVYNEDAINDKNQVTVNTSDFINDRLIIIEKELGSVDADIETYKRENQLTDISSETGMYLQESSQ 318
Cdd:COG3206 144 SPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE 223
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 319 YSQEGLGLENQLTLAKYIRDYLIDPHKSSDLIPANTgIADVNIEGQISEYNNLLLKRDKLISNSSNKNPVVMDLNNSLGA 398
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA 302
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 399 MK-------QTIIRAIDNLIVGLNIKIKNIKEREAQTSRRISAVPTQQKYVLSVERQQKIKEELYLYLLNKREENALSQA 471
Cdd:COG3206 303 LRaqlqqeaQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEA 382
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 472 ITESNARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAVSIPFLGEIPLRDKKNKDE 551
Cdd:COG3206 383 LTVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRERR 462
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 552 IVVRENGRDSISEAFRIVRTNMDFMRVKAKDMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHV 631
Cdd:COG3206 463 RARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLL 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 632 SGATNMGITNYLSGKVDNIDSIIGKEELAENLDIIH---TGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLV 708
Cdd:COG3206 543 LLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLlllPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAA 622
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 655319733 709 ADAAIVNRVADLTIYILRAGLMDRRQLPELEKLYKQDKFKNMSLILNGVRYN 760
Cdd:COG3206 623 LLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVY 674
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
15-726 |
1.77e-47 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 180.35 E-value: 1.77e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 15 NELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLIKDNTKGGGLSESAAFeelnMFNVKSNVDNEV 94
Cdd:PRK11519 16 DEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSA----LANKPPASDAEI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 95 LVFKSKRLMSIVAERLNLDIGYTVK------EGLRTVELYTQSPIAV---QFPEAEATQAFSLNVTPLTETEVMLSDFST 165
Cdd:PRK11519 92 QLIRSRLVLGKTVDDLDLDIAVSKNtfpifgAGWDRLMGRQNETVKVttfNRPKEMADQVFTLNVLDDKNYQLSSDGGFS 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 166 DETKMLKVVLNDTVITSIGKLVVTPtlyysdkyfGKPVAVVKKNRVDVALGYSNTLQVALASKTATIINLTLQDVSIPRA 245
Cdd:PRK11519 172 ARGQVGQMLKKDGVTLMVEAIHARP---------GTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 246 EDVLNMLIAVYNEDAINDKNQVTVNTSDFINDRLIIIEKELGSVDADIETYKRENQLTDISSEtgmylqessqysqeglg 325
Cdd:PRK11519 243 RDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE----------------- 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 326 lenqltlAKYIRDYLidphkssdlipantgiadVNIEGQIseyNNLLLKRDKLISNSSNKNPVVMDLNNslgamkqtiir 405
Cdd:PRK11519 306 -------AKAVLDSM------------------VNIDAQL---NELTFKEAEISKLYTKEHPAYRTLLE----------- 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 406 aidnlivglniKIKNIKEREAQTSRRISAVPTQQKYVLSVERQQKIKEELYLYLLNKREENALSQAITESNARVIDAAQG 485
Cdd:PRK11519 347 -----------KRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAIT 415
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 486 SRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAvSIPFLGEIPL-------------RDKKN--KD 550
Cdd:PRK11519 416 QPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEH-GISVYASIPLsewqkardsvktiKGIKRykQS 494
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 551 EIVVRENGRDSISEAFRIVRTNMDFMRVKAKDmKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGtLSSH 630
Cdd:PRK11519 495 QLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQN-NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKG-YTHE 572
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 631 VSGATNM-GITNYLSGKVDNIDSIigKEELAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVA 709
Cdd:PRK11519 573 LLGTNNVnGLSDILIGQGDITTAA--KPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVT 650
|
730
....*....|....*..
gi 655319733 710 DAAIVNRVADLTIYILR 726
Cdd:PRK11519 651 DAAIVGRHVGTTLMVAR 667
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
564-756 |
2.94e-46 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 163.51 E-value: 2.94e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 564 EAFRIVRTNMDFMRVKAKdMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHVSGATNMGITNYL 643
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAG-PKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 644 SGKVDNIDSIIGKEelAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVADAAIVNRVADLTIY 723
Cdd:cd05387 80 SGQASLEDVIQSTN--IPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLL 157
|
170 180 190
....*....|....*....|....*....|...
gi 655319733 724 ILRAGLMDRRQLPELEKLYKQDKFKNMSLILNG 756
Cdd:cd05387 158 VVRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
564-757 |
1.31e-43 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 156.44 E-value: 1.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 564 EAFRIVRTNMDFmrvKAKDMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLS-SHVSGATNMGITNY 642
Cdd:TIGR01007 1 EYYNAIRTNIQF---SGAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSgTFKSQNKITGLTNF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 643 LSGKVDNIDSIIGKEelAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVADAAIVNRVADLTI 722
Cdd:TIGR01007 78 LSGTTDLSDAICDTN--IENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASI 155
|
170 180 190
....*....|....*....|....*....|....*
gi 655319733 723 YILRAGLMDRRQLPELEKLYKQDKFKNMSLILNGV 757
Cdd:TIGR01007 156 LVTDAGKIKKREVKKAKEQLEQAGSNFLGVVLNKV 190
|
|
| GNVR |
pfam13807 |
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ... |
436-513 |
5.12e-11 |
|
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.
Pssm-ID: 433492 [Multi-domain] Cd Length: 82 Bit Score: 59.15 E-value: 5.12e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655319733 436 PTQQkYVLSVERQQKIKEELYLYLLNKREENALSQAITESNARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGII 513
Cdd:pfam13807 1 DTQQ-EILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLV 77
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1-760 |
5.05e-69 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 241.07 E-value: 5.05e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 1 MNSEQETTylRGEENELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLIKDNTKGGGLSESAafee 80
Cdd:COG3206 1 MNESSSAP--PEEEDEIDLRDLLRILRRRKWLILLVFLLVLALALLYALLLPPVYEASATLLVEPQSSDVLLSGLS---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 81 lNMFNVKSNVDNEVLVFKSKRLMSIVAERLNLDigytvkeglrtvelytQSPIAVQFPEAEATQAF--SLNVTPLTETev 158
Cdd:COG3206 75 -SLSASDSPLETQIEILKSRPVLERVVDKLNLD----------------EDPLGEEASREAAIERLrkNLTVEPVKGS-- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 159 mlsdfstdetkmlkvvlndtvitsigklvvtptlyysdkyfgkpvavvkknrvdvalgysntlqvalasktaTIINLTLQ 238
Cdd:COG3206 136 ------------------------------------------------------------------------NVIEISYT 143
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 239 DVSIPRAEDVLNMLIAVYNEDAINDKNQVTVNTSDFINDRLIIIEKELGSVDADIETYKRENQLTDISSETGMYLQESSQ 318
Cdd:COG3206 144 SPDPELAAAVANALAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSE 223
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 319 YSQEGLGLENQLTLAKYIRDYLIDPHKSSDLIPANTgIADVNIEGQISEYNNLLLKRDKLISNSSNKNPVVMDLNNSLGA 398
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA 302
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 399 MK-------QTIIRAIDNLIVGLNIKIKNIKEREAQTSRRISAVPTQQKYVLSVERQQKIKEELYLYLLNKREENALSQA 471
Cdd:COG3206 303 LRaqlqqeaQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEA 382
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 472 ITESNARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAVSIPFLGEIPLRDKKNKDE 551
Cdd:COG3206 383 LTVGNVRVIDPAVVPLKPVSPKKLLILALGLLLGLLLGLGLALLLELLDRTIEEELELLLLLGLPLLGPLPPLKSKRERR 462
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 552 IVVRENGRDSISEAFRIVRTNMDFMRVKAKDMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHV 631
Cdd:COG3206 463 RARLALLLLAAALAALLALLLALLLLLLLLLLLLLVSSSSGGGSSSTSSALAAASAAAAAAAALLLLLLLLLLLDLLLLL 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 632 SGATNMGITNYLSGKVDNIDSIIGKEELAENLDIIH---TGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLV 708
Cdd:COG3206 543 LLLLLLLLLLLGGLLLLLLLLLLLLLLLLLLLLLLLlllPPPLLLPLLLLLLLLLLLLLLLLLLLLSDDLILDLVPLLAA 622
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 655319733 709 ADAAIVNRVADLTIYILRAGLMDRRQLPELEKLYKQDKFKNMSLILNGVRYN 760
Cdd:COG3206 623 LLAAAVLAVLVVVLLLVVALVALARLALLAAALLLLLVLVVVGGVVLGGVVY 674
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
15-726 |
1.77e-47 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 180.35 E-value: 1.77e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 15 NELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLIKDNTKGGGLSESAAFeelnMFNVKSNVDNEV 94
Cdd:PRK11519 16 DEIDIGRLVGTVIEARWWVIGITAVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSA----LANKPPASDAEI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 95 LVFKSKRLMSIVAERLNLDIGYTVK------EGLRTVELYTQSPIAV---QFPEAEATQAFSLNVTPLTETEVMLSDFST 165
Cdd:PRK11519 92 QLIRSRLVLGKTVDDLDLDIAVSKNtfpifgAGWDRLMGRQNETVKVttfNRPKEMADQVFTLNVLDDKNYQLSSDGGFS 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 166 DETKMLKVVLNDTVITSIGKLVVTPtlyysdkyfGKPVAVVKKNRVDVALGYSNTLQVALASKTATIINLTLQDVSIPRA 245
Cdd:PRK11519 172 ARGQVGQMLKKDGVTLMVEAIHARP---------GTEFTVTKYSTLGMINNLQNNLTVTENGKDTGVLSLTYTGEDREQI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 246 EDVLNMLIAVYNEDAINDKNQVTVNTSDFINDRLIIIEKELGSVDADIETYKRENQLTDISSEtgmylqessqysqeglg 325
Cdd:PRK11519 243 RDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLE----------------- 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 326 lenqltlAKYIRDYLidphkssdlipantgiadVNIEGQIseyNNLLLKRDKLISNSSNKNPVVMDLNNslgamkqtiir 405
Cdd:PRK11519 306 -------AKAVLDSM------------------VNIDAQL---NELTFKEAEISKLYTKEHPAYRTLLE----------- 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 406 aidnlivglniKIKNIKEREAQTSRRISAVPTQQKYVLSVERQQKIKEELYLYLLNKREENALSQAITESNARVIDAAQG 485
Cdd:PRK11519 347 -----------KRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEASTVGDVRIVDPAIT 415
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 486 SRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAvSIPFLGEIPL-------------RDKKN--KD 550
Cdd:PRK11519 416 QPGVLKPKKALIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEH-GISVYASIPLsewqkardsvktiKGIKRykQS 494
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 551 EIVVRENGRDSISEAFRIVRTNMDFMRVKAKDmKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGtLSSH 630
Cdd:PRK11519 495 QLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQN-NVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKG-YTHE 572
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 631 VSGATNM-GITNYLSGKVDNIDSIigKEELAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVA 709
Cdd:PRK11519 573 LLGTNNVnGLSDILIGQGDITTAA--KPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVT 650
|
730
....*....|....*..
gi 655319733 710 DAAIVNRVADLTIYILR 726
Cdd:PRK11519 651 DAAIVGRHVGTTLMVAR 667
|
|
| BY-kinase |
cd05387 |
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ... |
564-756 |
2.94e-46 |
|
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.
Pssm-ID: 349772 [Multi-domain] Cd Length: 190 Bit Score: 163.51 E-value: 2.94e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 564 EAFRIVRTNMDFMRVKAKdMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHVSGATNMGITNYL 643
Cdd:cd05387 1 EAFRTLRTNLLFAGSDAG-PKVIAVTSASPGEGKSTVAANLAVALAQSGKRVLLIDADLRRPSLHRLLGLPNEPGLSEVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 644 SGKVDNIDSIIGKEelAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVADAAIVNRVADLTIY 723
Cdd:cd05387 80 SGQASLEDVIQSTN--IPNLDVLPAGTVPPNPSELLSSPRFAELLEELKEQYDYVIIDTPPVLAVADALILAPLVDGVLL 157
|
170 180 190
....*....|....*....|....*....|...
gi 655319733 724 ILRAGLMDRRQLPELEKLYKQDKFKNMSLILNG 756
Cdd:cd05387 158 VVRAGKTRRREVKEALERLEQAGAKVLGVVLNK 190
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
565-758 |
1.50e-44 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 162.28 E-value: 1.50e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 565 AFRIVRTNMDFMRVKAKDMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHVSGATNMGITNYLS 644
Cdd:COG0489 74 LLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENRPGLSDVLA 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 645 GKVDNIDSIIGKEelAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVADAAIVNRVADLTIYI 724
Cdd:COG0489 154 GEASLEDVIQPTE--VEGLDVLPAGPLPPNPSELLASKRLKQLLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVLLV 231
|
170 180 190
....*....|....*....|....*....|....
gi 655319733 725 LRAGLMDRRQLPELEKLYKQDKFKNMSLILNGVR 758
Cdd:COG0489 232 VRPGKTALDDVRKALEMLEKAGVPVLGVVLNMVC 265
|
|
| eps_fam |
TIGR01007 |
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide ... |
564-757 |
1.31e-43 |
|
capsular exopolysaccharide family; This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273392 [Multi-domain] Cd Length: 204 Bit Score: 156.44 E-value: 1.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 564 EAFRIVRTNMDFmrvKAKDMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLS-SHVSGATNMGITNY 642
Cdd:TIGR01007 1 EYYNAIRTNIQF---SGAEIKVLLITSVKPGEGKSTTSANIAIAFAQAGYKTLLIDGDMRNSVMSgTFKSQNKITGLTNF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 643 LSGKVDNIDSIIGKEelAENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVADAAIVNRVADLTI 722
Cdd:TIGR01007 78 LSGTTDLSDAICDTN--IENLDVITAGPVPPNPTELLQSSNFKTLIETLRKRFDYIIIDTPPIGTVTDAAIIARACDASI 155
|
170 180 190
....*....|....*....|....*....|....*
gi 655319733 723 YILRAGLMDRRQLPELEKLYKQDKFKNMSLILNGV 757
Cdd:TIGR01007 156 LVTDAGKIKKREVKKAKEQLEQAGSNFLGVVLNKV 190
|
|
| PRK09841 |
PRK09841 |
tyrosine-protein kinase; |
13-757 |
1.31e-43 |
|
tyrosine-protein kinase;
Pssm-ID: 182106 [Multi-domain] Cd Length: 726 Bit Score: 168.93 E-value: 1.31e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 13 EENELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLI---KDNTKGGGLSESAAfeelnmfNVKSN 89
Cdd:PRK09841 14 QENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVeqkQGNAILSGLSDMIP-------NSSPE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 90 VDNEVLVFKSKRLMSIVAERLNLDigYTVKEglRTVELY-------------TQSPIAVQFPEAEAtQAFSLNVTPLTET 156
Cdd:PRK09841 87 SAPEIQLLQSRMILGKTIAELNLR--DIVEQ--KYFPIVgrgwarltkekpgELAISWMHIPQLNG-QDQQLTLTVGENG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 157 EVML-SDFSTDETKMLKVVLNDTVITSIGKLVVTPtlyysdkyfGKPVAVVKKNRVDVALGYSNTLQVALASKTATIINL 235
Cdd:PRK09841 162 HYTLeGEEFTVNGMVGQRLEKDGVALTIADIKAKP---------GTQFVLSQRTELEAINALQETFTVSERSKESGMLEL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 236 TLQDVSIPRAEDVLNMLIAVYNEDAINDKNQVTVNTSDFINDRLIIIEKELGSVDADIETYKRENQLTDISSETGMYLQE 315
Cdd:PRK09841 233 TMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQ 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 316 SsqysqeglglenqltlakyirdylidphkssdlipantgiadVNIEGQISEynnlLLKRDKLISNSSNKNpvvmdlnns 395
Cdd:PRK09841 313 I------------------------------------------VNVDNQLNE----LTFREAEISQLYKKD--------- 337
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 396 lgamkQTIIRAidnlivgLNIKIKNIKEREAQTSRRISAVPTQQKYVLSVERQQKIKEELYLYLLNKREENALSQAITES 475
Cdd:PRK09841 338 -----HPTYRA-------LLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIG 405
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 476 NARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDaVSIPFLGEIPLR---DKK----N 548
Cdd:PRK09841 406 NVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLRRGVEAPEQLEE-HGISVYATIPMSewlDKRtrlrK 484
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 549 KDEIVVRENGR-------------DSISEAFRIVRTNMDFMRVKAKDmKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKV 615
Cdd:PRK09841 485 KNLFSNQQRHRtknipflavdnpaDSAVEAVRALRTSLHFAMMETEN-NILMITGATPDSGKTFVSSTLAAVIAQSDQKV 563
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 616 MLVDLDIRKGTLSSHVSGATNMGITNYLSGKVDNIDSIIGKEElaENLDIIHTGPVPPNPSELLLSTRLETLIEELKKRY 695
Cdd:PRK09841 564 LFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK--GGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHY 641
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 655319733 696 DYIILDNVPAGLVADAAIVNRVADLTIYILRAGLMDRRQLPELEKLYKQDKFKNMSLILNGV 757
Cdd:PRK09841 642 DLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 703
|
|
| eps_transp_fam |
TIGR01005 |
exopolysaccharide transport protein family; The model describes the exopolysaccharide ... |
14-760 |
4.17e-43 |
|
exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273391 [Multi-domain] Cd Length: 764 Bit Score: 167.59 E-value: 4.17e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 14 ENELNLKDLFHIVLANwYWFLLSV---LICCGAAFLYLkwAPKVYTRTASVLIKDNTKggglseSAAFEE---LNMFNVK 87
Cdd:TIGR01005 1 DGEIDLDRLLAALFAN-ARLIAAFaaaFIALGAAYAFF--ARPVYEADIMILLDDNLN------KAAEEEgdpSNLFDLD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 88 SNVDNEVLVFKSKRLMSIVAERLNLDIGYTVKEGLRtvelytqSPIAVqfpeaeatqafslnvtpltetevmlsdfstde 167
Cdd:TIGR01005 72 TDAAAAIEILKSGELAGKAVDKLHLSENAKILNPPR-------FPVDL-------------------------------- 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 168 tkmlkvvlndtvitsIGKLVVTPTLYYSDK-YFGKPVAVVKKNRVDVAlgySNTLQVALASKTATIINLT-----LQDVS 241
Cdd:TIGR01005 113 ---------------IGAWIKSAAGLFSEPgGFDLGEEAAGNERIDKA---AADIPEALAGEPFKLISLGagafrLEDKL 174
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 242 IprAEDVLNMLIAVYNEDAINDKNQVTVNTSDFINDRLIIIEKELGSVDADIETYKRENQLTDISSETGMYLQESSQYSQ 321
Cdd:TIGR01005 175 L--AAPIAGGVAEALEADQLIANFEAQENALTAKAEALFDLEQDSQAAALEMAHDKAEIAEKAAQGEIIGEAQLADLNPA 252
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 322 EGLGLENQLTlAKYIRDYL--IDPHKSSDLIPANTGIADVNIEGQISE--YNNL-LLKRDKLIS-NSSNKNPVVMDLNNS 395
Cdd:TIGR01005 253 LIAAIADQAA-AEARADNIkrIADEAEENAVFLAGILPKEGDELEIADlkTNELrNGKGEFDLSdEFGADHPEAVCSAPS 331
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 396 LGAMKQTIIRaidnLIVGLNIKIKNIKEREAQTS-----------RRISAVPTQQKYVLSVERQQKIKEELYLYLLNKRE 464
Cdd:TIGR01005 332 LQELKAKIAE----ELQQFTASHKGEQAIAQQIEeslrgkingiaGKLKDAPEIEQDLRELEQDAAADKELYESLLGDME 407
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 465 ENALSQAITESNARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAVSIPFLGEIPLR 544
Cdd:TIGR01005 408 QAKLQKAFKIAKARLIDEAAVPEEPSKPKKLMTLALAAVLGMMLGGAAAAFLEALEGGFRDEGDIEEHLGHRSLATVPLL 487
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 545 DK--KNKDEIVVRENG--------------------------RDSISEAFRIVRTNMDFMRVKAKDmKVVMFTSFNPNAG 596
Cdd:TIGR01005 488 DTqmDKKAQLTHAHFGsvkrhdeavddtmpfqllarivpdapRSTFAEAFRNAKLACDFALADAEN-NLIAIAGALPDEG 566
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 597 KTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHVSGATNMGITNYLSGKVdNIDSIIgKEELAENLDIIHTGPV---PP 673
Cdd:TIGR01005 567 KSFIAANFAALIAAGGKRTLLIDADIRKGGLHQMFGKAPKPGLLDLLAGEA-SIEAGI-HRDQRPGLAFIAAGGAshfPH 644
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 674 NPSELLLSTRLETLIEELKKRYDYIILDNVPAGLVADAAIVNRVADLTIYILRAGlmdRRQLPELEKLYKQDKFKNMSLI 753
Cdd:TIGR01005 645 NPNELLANPAMAELIDNARNAFDLVLVDLAALAAVADAAAFAALADGILFVTEFE---RSPLGEIRDLIHQEPHANSDVL 721
|
....*..
gi 655319733 754 lnGVRYN 760
Cdd:TIGR01005 722 --GVIFN 726
|
|
| FlhG |
COG0455 |
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ... |
599-758 |
3.28e-16 |
|
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440223 [Multi-domain] Cd Length: 230 Bit Score: 78.39 E-value: 3.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 599 FVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHVSGATNMGITNYLSGKVDnIDSIIgkEELAENLDIIHTGPVPPNPSEL 678
Cdd:COG0455 1 TVAVNLAAALARLGKRVLLVDADLGLANLDVLLGLEPKATLADVLAGEAD-LEDAI--VQGPGGLDVLPGGSGPAELAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 679 LLSTRLETLIEELKKRYDYIILDnVPAGLVADAAIVNRVADLTIYILR---AGLMDRRQLpeLEKLYKQDKFKNMSLILN 755
Cdd:COG0455 78 DPEERLIRVLEELERFYDVVLVD-TGAGISDSVLLFLAAADEVVVVTTpepTSITDAYAL--LKLLRRRLGVRRAGVVVN 154
|
...
gi 655319733 756 GVR 758
Cdd:COG0455 155 RVR 157
|
|
| CpaE |
COG4963 |
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ... |
477-757 |
9.93e-14 |
|
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443989 [Multi-domain] Cd Length: 358 Bit Score: 73.61 E-value: 9.93e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 477 ARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAVSIPFLGEIPLRDKKNKDEIVVRE 556
Cdd:COG4963 1 DLVALRPLPRISIQAFCESAALAALIEAAAEDRRLALAAVAVASGGAAAAAAAYLSAPTPNLILLEALSESAALLADVLP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 557 NGRDSISEAFRIVRTnmdfmRVKAKDMKVVMFTSFNPNAGKTFVSMNLAMSFA-LTSKKVMLVDLDIRKGTLSSHVSGAT 635
Cdd:COG4963 81 LSPDELRAALARLLD-----PGAARRGRVIAVVGAKGGVGATTLAVNLAWALArESGRRVLLVDLDLQFGDVALYLDLEP 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 636 NMGITNYLS--GKVDN--IDSIIGKEElaENLDIIhTGPVPPNPSELLLSTRLETLIEELKKRYDYIILDnVPAGLV--- 708
Cdd:COG4963 156 RRGLADALRnpDRLDEtlLDRALTRHS--SGLSVL-AAPADLERAEEVSPEAVERLLDLLRRHFDYVVVD-LPRGLNpwt 231
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 655319733 709 ------ADAAIVnrVADLTIYILRAGlmdRRQLPELEKL-YKQDKFKnmsLILNGV 757
Cdd:COG4963 232 laaleaADEVVL--VTEPDLPSLRNA---KRLLDLLRELgLPDDKVR---LVLNRV 279
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
466-623 |
2.55e-13 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 71.64 E-value: 2.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 466 NALSQAITE--------SNARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGIIWLLVVMNTTVRTRKDIEDAVSIPF 537
Cdd:COG3944 131 NAVAEVFAEevkelmkvDNVTVLDPATVPASPVSPNPKLNLAIGLVLGLLLGVGLAFLRELLDTTIRSEEDIERLLGLLL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 538 LGEIPLRDKKNKDEIVVRENGRDSISEAFRIVRTNMDFMRVkakDMKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVML 617
Cdd:COG3944 211 GGAVPAARSARPLLLLLADASPRAAAARRRRRNLLFALAAV---DARTVVVVSSSLSEGKSTTTAALALALAAAAAGVVL 287
|
....*.
gi 655319733 618 VDLDIR 623
Cdd:COG3944 288 VLADLD 293
|
|
| GNVR |
pfam13807 |
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, ... |
436-513 |
5.12e-11 |
|
G-rich domain on putative tyrosine kinase; This domain is found between two families, Wzz, pfam02706 and CbiA pfam01656. There is a highly conserved GNVR sequence motif which characterizes this domain. The function is not known.
Pssm-ID: 433492 [Multi-domain] Cd Length: 82 Bit Score: 59.15 E-value: 5.12e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655319733 436 PTQQkYVLSVERQQKIKEELYLYLLNKREENALSQAITESNARVIDAAQGSRNPIAPKSMMILLAAVVLGLAIPSGII 513
Cdd:pfam13807 1 DTQQ-EILRLTRDVEVNTEIYTQLLNSNQELEVVKAGTVGNVRIVDTAVVPPKPVKPKKALIVVLALLLGLMLGVGLV 77
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
586-762 |
1.67e-10 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 61.59 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 586 VMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIrkGTLSSHVSGATNMGITNYLS-----GKVDNIDSIIGKEEL- 659
Cdd:pfam01656 1 IAIAGTKGGVGKTTLAANLARALARRGLRVLLIDLDP--QSNNSSVEGLEGDIAPALQAlaeglKGRVNLDPILLKEKSd 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 660 AENLDIIHTGPVPPNPSELLLSTRLETLI----EELKKRYDYIILDNVP--------AGLVADAAIVnrVADLTIYILRA 727
Cdd:pfam01656 79 EGGLDLIPGNIDLEKFEKELLGPRKEERLrealEALKEDYDYVIIDGAPglgellrnALIAADYVII--PLEPEVILVED 156
|
170 180 190
....*....|....*....|....*....|....*
gi 655319733 728 GLMDRRQLPELEKLYKQDKFKNMSLILNGVRYNHS 762
Cdd:pfam01656 157 AKRLGGVIAALVGGYALLGLKIIGVVLNKVDGDNH 191
|
|
| ParA |
COG1192 |
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ... |
583-744 |
1.07e-09 |
|
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];
Pssm-ID: 440805 [Multi-domain] Cd Length: 253 Bit Score: 59.87 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 583 MKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRkGTLSSHV---SGATNMGITNYLSGKVDnIDSIIGKEEl 659
Cdd:COG1192 1 MKVIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-GNLTSGLgldPDDLDPTLYDLLLDDAP-LEDAIVPTE- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 660 AENLDIIhtgpvppnPSELLLS-------------TRLETLIEELKKRYDYIILDNVPA-GLVADAAIVnrVADLTIYIL 725
Cdd:COG1192 78 IPGLDLI--------PANIDLAgaeielvsrpgreLRLKRALAPLADDYDYILIDCPPSlGLLTLNALA--AADSVLIPV 147
|
170
....*....|....*....
gi 655319733 726 RAGLMDRRQLPELEKLYKQ 744
Cdd:COG1192 148 QPEYLSLEGLAQLLETIEE 166
|
|
| AAA_31 |
pfam13614 |
AAA domain; This family includes a wide variety of AAA domains including some that have lost ... |
583-714 |
2.93e-09 |
|
AAA domain; This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.
Pssm-ID: 433350 [Multi-domain] Cd Length: 177 Bit Score: 57.21 E-value: 2.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 583 MKVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDiRKGTLSSHVSGATNMGITNYLSGKVD--NIDSIIgKEELA 660
Cdd:pfam13614 1 GKVIAIANQKGGVGKTTTSVNLAAALAKKGKKVLLIDLD-PQGNATSGLGIDKNNVEKTIYELLIGecNIEEAI-IKTVI 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655319733 661 ENLDIIhtgpvppnPSELLLS-------------TRLETLIEELKKRYDYIILDNVPA-GLVADAAIV 714
Cdd:pfam13614 79 ENLDLI--------PSNIDLAgaeieligienreNILKEALEPVKDNYDYIIIDCPPSlGLLTINALT 138
|
|
| YveK |
COG3944 |
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; |
16-116 |
1.26e-08 |
|
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443144 [Multi-domain] Cd Length: 309 Bit Score: 57.38 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 16 ELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLIkdnTKGGGLSESAAFEELNMfnVKSNVDNEVL 95
Cdd:COG3944 1 EMDLREYLRILRRRWWLILLLTLLGALAALASSFLITPVYQASTTLLV---STSSGSDASDLYQGIQT--AQQLVNTYAE 75
|
90 100
....*....|....*....|.
gi 655319733 96 VFKSKRLMSIVAERLNLDIGY 116
Cdd:COG3944 76 LLKSPAVLEEVIDELGLDLSP 96
|
|
| MinD |
cd02036 |
septum site-determining protein MinD; Septum site-determining protein MinD is part of the ... |
584-714 |
4.26e-07 |
|
septum site-determining protein MinD; Septum site-determining protein MinD is part of the operon MinCDE that determines the site of the formation of a septum at mid-cell, an important part of bacterial cell division. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein.
Pssm-ID: 349756 [Multi-domain] Cd Length: 236 Bit Score: 51.82 E-value: 4.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 584 KVVMFTSFNPNAGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSH--VSGATNMGITNYLSGKVDNIDSIIgKEELAE 661
Cdd:cd02036 1 RVIVITSGKGGVGKTTTTANLGVALAKLGKKVLLIDADIGLRNLDLIlgLENRIVYTLVDVLEGECRLEQALI-KDKRWE 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 655319733 662 NLDIIhtgPVPPNPSELLLS-TRLETLIEELKKRYDYIILDNvPAGL---------VADAAIV 714
Cdd:cd02036 80 NLYLL---PASQTRDKDALTpEKLEELVKELKDSFDFILIDS-PAGIesgfinaiaPADEAII 138
|
|
| FlhG-like |
cd02038 |
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ... |
596-758 |
9.62e-07 |
|
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.
Pssm-ID: 349758 [Multi-domain] Cd Length: 230 Bit Score: 50.65 E-value: 9.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 596 GKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLSSHVSGATNMGITNYLSGKVDNIDSIIGKEelaENLDIIhtgPVPPNP 675
Cdd:cd02038 13 GKTNVSANLALALSKLGKRVLLLDADLGLANLDILLGLAPKKTLGDVLKGRVSLEDIIVEGP---EGLDII---PGGSGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 676 SEL--LLSTRLETLIEELKK---RYDYIILDnVPAGLVADAAIVNRVADLTIYILR---AGLMDRRQLpeLEKLYKQDKF 747
Cdd:cd02038 87 EELanLDPEQKAKLIEELSSlesNYDYLLID-TGAGISRNVLDFLLAADEVIVVTTpepTSITDAYAL--IKVLSRRGGK 163
|
170
....*....|.
gi 655319733 748 KNMSLILNGVR 758
Cdd:cd02038 164 KNFRLIVNMAR 174
|
|
| Wzz |
pfam02706 |
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide ... |
15-107 |
4.69e-06 |
|
Chain length determinant protein; This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Pssm-ID: 460658 [Multi-domain] Cd Length: 90 Bit Score: 45.35 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 15 NELNLKDLFHIVLANWYWFLLSVLICCGAAFLYLKWAPKVYTRTASVLIKDNtkgggLSESAAFEELNMFNVKSNVDNEV 94
Cdd:pfam02706 1 DEIDLIELLGVLWKRKKLIILVTLLFTLLAAAYAFLATPKYTATAQILVPQK-----KGEAGSLLGSDLQAGLQLASTEI 75
|
90
....*....|...
gi 655319733 95 LVFKSKRLMSIVA 107
Cdd:pfam02706 76 EILKSRDVLEKVI 88
|
|
| PHA02518 |
PHA02518 |
ParA-like protein; Provisional |
595-743 |
9.19e-05 |
|
ParA-like protein; Provisional
Pssm-ID: 222854 [Multi-domain] Cd Length: 211 Bit Score: 44.46 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 595 AGKTFVSMNLAMSFALTSKKVMLVDLDIRKGTLsshvsgatnmgitnylsgkvdniDSIIGKEELAENLDIIHTGPvppn 674
Cdd:PHA02518 12 AGKTTVATNLASWLHADGHKVLLVDLDPQGSST-----------------------DWAEAREEGEPLIPVVRMGK---- 64
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 655319733 675 pselllstRLETLIEELKKRYDYIILDNVPAGLVADAAIVnRVADLTIYILRAGLMDRRQLPELEKLYK 743
Cdd:PHA02518 65 --------SIRADLPKVASGYDYVVVDGAPQDSELARAAL-RIADMVLIPVQPSPFDIWAAPDLVELIK 124
|
|
| ParAB_family |
cd02042 |
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ... |
595-621 |
3.00e-03 |
|
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.
Pssm-ID: 349760 [Multi-domain] Cd Length: 130 Bit Score: 38.68 E-value: 3.00e-03
10 20
....*....|....*....|....*..
gi 655319733 595 AGKTFVSMNLAMSFALTSKKVMLVDLD 621
Cdd:cd02042 12 VGKTTLAVNLAAALALRGKRVLLIDLD 38
|
|
| CpaE-like |
cd03111 |
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE ... |
584-701 |
7.34e-03 |
|
pilus assembly ATPase CpaE; This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Pssm-ID: 349765 [Multi-domain] Cd Length: 235 Bit Score: 38.80 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655319733 584 KVVMFTSFNPNAGKTFVSMNLAMSFA-LTSKKVMLVDLDIRKGTLSSHVSGATNMGITNyLSGKVDNIDSIIGKEELAEN 662
Cdd:cd03111 1 RVVAVVGAKGGVGASTLAVNLAQELAqRAKDKVLLIDLDLPFGDLGLYLNLRPDYDLAD-VIQNLDRLDRTLLDSAVTRH 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 655319733 663 LDIIHtgpVPPNPSELLLSTRLET-----LIEELKKRYDYIILD 701
Cdd:cd03111 80 SSGLS---LLPAPQELEDLEALGAeqvdkLLQVLRAFYDHIIVD 120
|
|
| |
