|
Name |
Accession |
Description |
Interval |
E-value |
| LpoA |
COG3107 |
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ... |
30-599 |
0e+00 |
|
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442341 [Multi-domain] Cd Length: 610 Bit Score: 610.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 30 DLPRTPDASIEQLLEQATTAKTPEKAALlRLSAADMAYKQNNPGRSSQILAQVPLDALKPAAQVFASTLAAELAMARNQP 109
Cdd:COG3107 40 DLQGEATASAEYYLQQAEQSQPEEKADY-QLLAARALLQEGQLAQARALLAQLPPQQLSPEQQLEYQLLLAELALAQGDP 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 110 KAALTALNHPSLQSLkelPPEQQIRTGSVHARAYEADGQTLAAARERVAMAPLLTGDAAK-SNHEAIWVLIAALPAEQLQ 188
Cdd:COG3107 119 EAALALLSQLSLASL---SPEQQARYYQLRAQAYEQQGDPLAAARARIALEPLLTDGQARqENQDQIWQLLSQLPPAQLQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 189 A----SGNSTLDGWITLAQAVK-GAGTLEQQQAAIDTWRAQNPGHPAAVQLPMPLTKLKELASQPLTKIALLLPQDGQLA 263
Cdd:COG3107 196 SlainADEPVLQGWLELALIYRqNGGDPDQLQQALNDWQQRYPQHPAAKLLPTELQQLLALQPAQPKKIALLLPLSGRLA 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 264 SVGKALREGFMAAHYQAEQAGQKPPVIEFYDSSrLNSLDDFYAKAQADGVQLVVGPLEKPLVKQLSARPQLPITTLALNY 343
Cdd:COG3107 276 PAGQAIRDGFLAAYYADLSAGGSRPQLRFYDTN-SADIAALYQQAQQDGADFVIGPLLKENVDALAALPSLPVPTLALNQ 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 344 SETDQGPAQLFQFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMGVEYVDQPVALAQQI 423
Cdd:COG3107 355 PDDPRAPPNLYQFGLSPEDEARQAAERAWQDGHRRALVLAPDGSWGDRVAEAFAQRWQQLGGQVVDVQYYDPQADLSQAI 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 424 ADLFQLRKSEGRAKSLQSTVGTDVAAQPSRRQDIEFIFLAVTPQLAQQIKPTLNFQYAGDVPVYATSHVFSASGDKNQYL 503
Cdd:COG3107 435 KSLLGIDQSEARIRQLKRLLGLSLEFEPRRRQDIDAIFLVATPEQARLIKPQLDFHYAGDLPVYATSRSYSGNPDPDQDR 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 504 DMTNVMFCETPWLLNTTDPLRNQVAAQWPQANGSLGRLYAMGVDAYRLAPRLGQLKALPDTRVDGLSGNLGISTNQRVDR 583
Cdd:COG3107 515 DLNGVQFSDMPWLLDPNPPLRQQLEQLWPNADGSLARLYAMGVDAYRLAPRLNQLRQIPGYRLNGLTGTLSLDPDGRIER 594
|
570
....*....|....*.
gi 655192887 584 QMPWAKFVGGEIQRLP 599
Cdd:COG3107 595 QLSWAQFRNGRPVPLP 610
|
|
| LppC |
pfam04348 |
LppC putative lipoprotein; This family includes several bacterial outer membrane antigens, ... |
33-590 |
3.64e-171 |
|
LppC putative lipoprotein; This family includes several bacterial outer membrane antigens, whose molecular function is unknown.
Pssm-ID: 367906 [Multi-domain] Cd Length: 532 Bit Score: 497.02 E-value: 3.64e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 33 RTPDASIEQLLEQATTAKtPEKAALLRLSAADMAYKQNNPGRSSQILAQVPLDALKPAAQVFASTLAAELAMARNQPKAA 112
Cdd:pfam04348 1 GDPNASSQFYLNKASQSQ-GEQQNTYKLLAARVLIEENKIAQAQALLRELSVQQLTDEQKLDKSLLEAELAAAKRQNEVA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 113 LTALNHpslQSLKELPPEQQIRTGSVHARAYEADGQTLAAARERVAMAPLLTGDAAK-SNHEAIWVLIAALPAEQLQ--- 188
Cdd:pfam04348 80 LQQLSH---QHLSSLSPSQQSRYYEGRARIAEARGDAIEAAKARIQMDQLLSDVKRKqENQDKIWALLRSLDHGVLNnaa 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 189 ASGNSTLDGWITLAQAVK-GAGTLEQQQAAIDTWRAQNPGHPAAVQLPMPLTKLKELASQPLTKIALLLPQDGQLASVGK 267
Cdd:pfam04348 157 AEGNAALGGWLTLARLYNtNLSQPAQLSQSLQSWKNAYPTHPAASLFPKALTDLLNFQQTPPSQIALLLPLSGNLATIAA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 268 ALREGFMAAHYQAeqaGQKPPVIEFYDSSrLNSLDDFYAKAQADGVQLVVGPLEKPLVKQLSARPQL--PITTLALNYSE 345
Cdd:pfam04348 237 TIRDGFLAAKYAE---GNSNPQVQVFDTA-ATSLEDIYAQAKAAGIDTVVGPLLKQNVDVLLANPQLvqGIPVLALNSTD 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 346 TDQGPAQLFQFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMGVEYVDQPVALAQQIAD 425
Cdd:pfam04348 313 NSRAIAQLCYYGLSPEDEAESAANKMWNDGVRNPLVLVPQNDLGRRVVAAFNVRWQQLGGTDAAIRFYNLPADLTYRLRP 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 426 lfqlrksegrakslqstvgtdvaaqpsRRQDIEFIFLAVTPQLAQQIKPTLNFQYAGDVPVYATSHVFSASGDKNQYLDM 505
Cdd:pfam04348 393 ---------------------------ADRDTDAVYIVANPPQLAEIKPTLANLSSPTLKLYATSRSNSGNTNPEQDLDL 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 506 TNVMFCETPWLLNTTDPLRNQVAAQWPQANGSLGRLYAMGVDAYRLAPRLGQLKALPDTRVDGLSGNLGISTNQRVDRQM 585
Cdd:pfam04348 446 NGIQFSDIPFFKDPVSSQYQKVAVKWPNGDGSLMRLYAMGVDAWRLINQLNELRQVPGYTIDGLTGTLSADPNCNVERDM 525
|
....*
gi 655192887 586 PWAKF 590
Cdd:pfam04348 526 TWAQY 530
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
251-588 |
6.71e-97 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 299.19 E-value: 6.71e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGFMAAHYQAeqaGQKPPVIEFYDSSRLNSLDDFYAKAQADGVQLVVGPLEKPLVKQLSA 330
Cdd:cd06339 1 RIALLLPLSGPYAAAGQAIRDGIELALFDA---GGSRPELRVYDTGGPEGAAAAYQQAVAEGADLIIGPLLKSSVAALAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 331 R-PQLPITTLALNYSETDQGPAQLFQFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMG 409
Cdd:cd06339 78 AaQALGVPVLALNNDESATAGPGLFQFGLSPEDEARQAARYAVQQGLRRFAVLAPDNAYGQRVANAFREAWQALGGTVVA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 410 VEYVDQPVA-LAQQIADLFQLRKSEGRAKSLqstvGTDVAAQPSRRQDIEFIFLAVTPQLAQQIKPTLNFQYAGDVPVYA 488
Cdd:cd06339 158 VESYDPDETdFSAAIRRLLGVDQSEARIRQL----GELLEFEPRRRQDFDAIFLPAGPEQARLIAPQLAFYGAGDVPLLG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 489 TSHVFSASGDKNQYLDMTNVMFCETPWLLNTTD-PLRNQVAAQWPQAngslgRLYAMGVDAYRLAPRLGQLKA--LPDTR 565
Cdd:cd06339 234 TSLWYSGKLNLLRDPDLNGAWFADPPWLLSPRAfPLRYRLAYGWPPP-----RLAALGYDAYRLAARLARLGGglTPGAG 308
|
330 340
....*....|....*....|...
gi 655192887 566 VDGLSGNLGISTNQRVDRQMPWA 588
Cdd:cd06339 309 FSGLTGLLRLDPDGRIERQLAWA 331
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LpoA |
COG3107 |
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ... |
30-599 |
0e+00 |
|
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442341 [Multi-domain] Cd Length: 610 Bit Score: 610.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 30 DLPRTPDASIEQLLEQATTAKTPEKAALlRLSAADMAYKQNNPGRSSQILAQVPLDALKPAAQVFASTLAAELAMARNQP 109
Cdd:COG3107 40 DLQGEATASAEYYLQQAEQSQPEEKADY-QLLAARALLQEGQLAQARALLAQLPPQQLSPEQQLEYQLLLAELALAQGDP 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 110 KAALTALNHPSLQSLkelPPEQQIRTGSVHARAYEADGQTLAAARERVAMAPLLTGDAAK-SNHEAIWVLIAALPAEQLQ 188
Cdd:COG3107 119 EAALALLSQLSLASL---SPEQQARYYQLRAQAYEQQGDPLAAARARIALEPLLTDGQARqENQDQIWQLLSQLPPAQLQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 189 A----SGNSTLDGWITLAQAVK-GAGTLEQQQAAIDTWRAQNPGHPAAVQLPMPLTKLKELASQPLTKIALLLPQDGQLA 263
Cdd:COG3107 196 SlainADEPVLQGWLELALIYRqNGGDPDQLQQALNDWQQRYPQHPAAKLLPTELQQLLALQPAQPKKIALLLPLSGRLA 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 264 SVGKALREGFMAAHYQAEQAGQKPPVIEFYDSSrLNSLDDFYAKAQADGVQLVVGPLEKPLVKQLSARPQLPITTLALNY 343
Cdd:COG3107 276 PAGQAIRDGFLAAYYADLSAGGSRPQLRFYDTN-SADIAALYQQAQQDGADFVIGPLLKENVDALAALPSLPVPTLALNQ 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 344 SETDQGPAQLFQFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMGVEYVDQPVALAQQI 423
Cdd:COG3107 355 PDDPRAPPNLYQFGLSPEDEARQAAERAWQDGHRRALVLAPDGSWGDRVAEAFAQRWQQLGGQVVDVQYYDPQADLSQAI 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 424 ADLFQLRKSEGRAKSLQSTVGTDVAAQPSRRQDIEFIFLAVTPQLAQQIKPTLNFQYAGDVPVYATSHVFSASGDKNQYL 503
Cdd:COG3107 435 KSLLGIDQSEARIRQLKRLLGLSLEFEPRRRQDIDAIFLVATPEQARLIKPQLDFHYAGDLPVYATSRSYSGNPDPDQDR 514
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 504 DMTNVMFCETPWLLNTTDPLRNQVAAQWPQANGSLGRLYAMGVDAYRLAPRLGQLKALPDTRVDGLSGNLGISTNQRVDR 583
Cdd:COG3107 515 DLNGVQFSDMPWLLDPNPPLRQQLEQLWPNADGSLARLYAMGVDAYRLAPRLNQLRQIPGYRLNGLTGTLSLDPDGRIER 594
|
570
....*....|....*.
gi 655192887 584 QMPWAKFVGGEIQRLP 599
Cdd:COG3107 595 QLSWAQFRNGRPVPLP 610
|
|
| LppC |
pfam04348 |
LppC putative lipoprotein; This family includes several bacterial outer membrane antigens, ... |
33-590 |
3.64e-171 |
|
LppC putative lipoprotein; This family includes several bacterial outer membrane antigens, whose molecular function is unknown.
Pssm-ID: 367906 [Multi-domain] Cd Length: 532 Bit Score: 497.02 E-value: 3.64e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 33 RTPDASIEQLLEQATTAKtPEKAALLRLSAADMAYKQNNPGRSSQILAQVPLDALKPAAQVFASTLAAELAMARNQPKAA 112
Cdd:pfam04348 1 GDPNASSQFYLNKASQSQ-GEQQNTYKLLAARVLIEENKIAQAQALLRELSVQQLTDEQKLDKSLLEAELAAAKRQNEVA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 113 LTALNHpslQSLKELPPEQQIRTGSVHARAYEADGQTLAAARERVAMAPLLTGDAAK-SNHEAIWVLIAALPAEQLQ--- 188
Cdd:pfam04348 80 LQQLSH---QHLSSLSPSQQSRYYEGRARIAEARGDAIEAAKARIQMDQLLSDVKRKqENQDKIWALLRSLDHGVLNnaa 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 189 ASGNSTLDGWITLAQAVK-GAGTLEQQQAAIDTWRAQNPGHPAAVQLPMPLTKLKELASQPLTKIALLLPQDGQLASVGK 267
Cdd:pfam04348 157 AEGNAALGGWLTLARLYNtNLSQPAQLSQSLQSWKNAYPTHPAASLFPKALTDLLNFQQTPPSQIALLLPLSGNLATIAA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 268 ALREGFMAAHYQAeqaGQKPPVIEFYDSSrLNSLDDFYAKAQADGVQLVVGPLEKPLVKQLSARPQL--PITTLALNYSE 345
Cdd:pfam04348 237 TIRDGFLAAKYAE---GNSNPQVQVFDTA-ATSLEDIYAQAKAAGIDTVVGPLLKQNVDVLLANPQLvqGIPVLALNSTD 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 346 TDQGPAQLFQFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMGVEYVDQPVALAQQIAD 425
Cdd:pfam04348 313 NSRAIAQLCYYGLSPEDEAESAANKMWNDGVRNPLVLVPQNDLGRRVVAAFNVRWQQLGGTDAAIRFYNLPADLTYRLRP 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 426 lfqlrksegrakslqstvgtdvaaqpsRRQDIEFIFLAVTPQLAQQIKPTLNFQYAGDVPVYATSHVFSASGDKNQYLDM 505
Cdd:pfam04348 393 ---------------------------ADRDTDAVYIVANPPQLAEIKPTLANLSSPTLKLYATSRSNSGNTNPEQDLDL 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 506 TNVMFCETPWLLNTTDPLRNQVAAQWPQANGSLGRLYAMGVDAYRLAPRLGQLKALPDTRVDGLSGNLGISTNQRVDRQM 585
Cdd:pfam04348 446 NGIQFSDIPFFKDPVSSQYQKVAVKWPNGDGSLMRLYAMGVDAWRLINQLNELRQVPGYTIDGLTGTLSADPNCNVERDM 525
|
....*
gi 655192887 586 PWAKF 590
Cdd:pfam04348 526 TWAQY 530
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
251-588 |
6.71e-97 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 299.19 E-value: 6.71e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGFMAAHYQAeqaGQKPPVIEFYDSSRLNSLDDFYAKAQADGVQLVVGPLEKPLVKQLSA 330
Cdd:cd06339 1 RIALLLPLSGPYAAAGQAIRDGIELALFDA---GGSRPELRVYDTGGPEGAAAAYQQAVAEGADLIIGPLLKSSVAALAA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 331 R-PQLPITTLALNYSETDQGPAQLFQFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMG 409
Cdd:cd06339 78 AaQALGVPVLALNNDESATAGPGLFQFGLSPEDEARQAARYAVQQGLRRFAVLAPDNAYGQRVANAFREAWQALGGTVVA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 410 VEYVDQPVA-LAQQIADLFQLRKSEGRAKSLqstvGTDVAAQPSRRQDIEFIFLAVTPQLAQQIKPTLNFQYAGDVPVYA 488
Cdd:cd06339 158 VESYDPDETdFSAAIRRLLGVDQSEARIRQL----GELLEFEPRRRQDFDAIFLPAGPEQARLIAPQLAFYGAGDVPLLG 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 489 TSHVFSASGDKNQYLDMTNVMFCETPWLLNTTD-PLRNQVAAQWPQAngslgRLYAMGVDAYRLAPRLGQLKA--LPDTR 565
Cdd:cd06339 234 TSLWYSGKLNLLRDPDLNGAWFADPPWLLSPRAfPLRYRLAYGWPPP-----RLAALGYDAYRLAARLARLGGglTPGAG 308
|
330 340
....*....|....*....|...
gi 655192887 566 VDGLSGNLGISTNQRVDRQMPWA 588
Cdd:cd06339 309 FSGLTGLLRLDPDGRIERQLAWA 331
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
251-414 |
1.69e-07 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 53.40 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGFMAAhyqAEQAGQKPPV----IEfydssrLNSLDDFYAKAQA----------DGVQLV 316
Cdd:COG0683 5 KIGVLLPLTGPYAALGQPIKNGAELA---VEEINAAGGVlgrkIE------LVVEDDASDPDTAvaaarklidqDKVDAI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 317 VGPLEKPLVKQLSAR------PQLPITTLALNYSETDQGPaQLFQFGLAAEDEAREVSRRARAD-GLHRAAAMVPRGEWG 389
Cdd:COG0683 76 VGPLSSGVALAVAPVaeeagvPLISPSATAPALTGPECSP-YVFRTAPSDAQQAEALADYLAKKlGAKKVALLYDDYAYG 154
|
170 180
....*....|....*....|....*
gi 655192887 390 ERVYKAFRQDWEANGGQVMGVEYVD 414
Cdd:COG0683 155 QGLAAAFKAALKAAGGEVVGEEYYP 179
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
251-416 |
3.60e-07 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 52.33 E-value: 3.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGFMAAHYQAEQAGQ---KPPVIEFYDSSrlNSLDDFYAKAQA----DGVQLVVGPLEKP 323
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGingRKLELVIADDQ--GDPETAVAVARKlvddDKVLAVVGHYSSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 324 LVK---QLSARPQLP-ITTLALNYSETDQGPAQLFQFGLAAEDEAREVSRRARADGLH-RAAAMVPRGEWGERVYKAFRQ 398
Cdd:cd06268 79 VTLaaaPIYQEAGIPlISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLKGkKVAILYDDYDYGKSLADAFKK 158
|
170
....*....|....*...
gi 655192887 399 DWEANGGQVMGVEYVDQP 416
Cdd:cd06268 159 ALKALGGEIVAEEDFPLG 176
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
251-407 |
3.66e-04 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 42.97 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGFMAA--HYQAEQAGQKppvIEF--YDSSrlNSLDDFYAKAQA----DGVQLVVGPL-- 320
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELAleEVGGEVAGRK---VELvvEDDA--GDPDTAVTKARKlveqDKVDVLIGPLsg 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 321 -EKPLVKQLSARPQLP-ITTLALNYSETDQGPAQ-LFQFGLAAEDEAREVSRRARADGLHRAAAMVprGE---WGERVYK 394
Cdd:cd06332 76 dEGLAVAPYAKEPGVPfINPVAGADDLTQRAKAPnFFRTSFTGSQWSAPLGDYAYKELGYKKVATI--GSdyaFGYEQAA 153
|
170
....*....|...
gi 655192887 395 AFRQDWEANGGQV 407
Cdd:cd06332 154 GFKRGFEAAGGEV 166
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| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
251-414 |
4.17e-04 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 42.99 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGF-MAAHYQAEQ-----AGQKPPViefydssRLNSLDDFYAKAQA----------DGVQ 314
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLeLAADEINAAggikvGGKKYKV-------EVVSYDDKYTPAEAvaaarrlvsqDGVK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 315 LVVGPL---EKPLVKQLSARPQlpITTLALNYSETDQGPAQ--LFQFGLAAEDEAREVSRRARA-DGLHRAAAMVPRGEW 388
Cdd:cd06336 74 FIFGPGgsaIAAAVQPVTERNK--VLLLTAAFSDPILGPDNplLFRIPPTPYEYAPPFIKWLKKnGPIKTVALIAPNDAT 151
|
170 180
....*....|....*....|....*.
gi 655192887 389 GERVYKAFRQDWEANGGQVMGVEYVD 414
Cdd:cd06336 152 GKDWAAAFVAAWKAAGGEVVAEEFYD 177
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| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
40-118 |
3.31e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.89 E-value: 3.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 655192887 40 EQLLEQAttAKTPEKAALLRLSAADMAYKQNNPGRSSQILAQvpLDALKPAAQVFASTLAAELAMARNQPKAALTALNH 118
Cdd:COG3071 36 EKLLSKA--AEHSEAPLLAYLLAARAAQALGDYERRDEYLAQ--ALELAPEAELAVLLTRAELLLDQGQAEQALATLEA 110
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| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
251-415 |
4.00e-03 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 39.47 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGF-MAAHYQAEQAGQKPPVIEFY--DS--------SRLNSLDDfyakaqADGVQLVVGP 319
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAeLAVEEINAAGGVLGKKVELVveDSqtdptaavDAARKLVD------VEGVPAIVGA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 320 L---------------EKPLVKQLSARPQLpittlalnyseTDQGPAQLFqFGLAAED--EAREVSRRARADGLHRAAAM 382
Cdd:cd06346 75 AssgvtlavasvavpnGVVQISPSSTSPAL-----------TTLEDKGYV-FRTAPSDalQGVVLAQLAAERGFKKVAVI 142
|
170 180 190
....*....|....*....|....*....|...
gi 655192887 383 VPRGEWGERVYKAFRQDWEANGGQVMGVEYVDQ 415
Cdd:cd06346 143 YVNNDYGQGLADAFKKAFEALGGTVTASVPYEP 175
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|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
251-425 |
5.69e-03 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 39.18 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 251 KIALLLPQDGQLASVGKALREGFMAAHYQAEQAGQ---KPPVIEFYDSSrlNSLDDFYAKAQA----DGVQLVVGPLEKP 323
Cdd:pfam13458 3 KIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGvngRKIELVVADDQ--GDPDVAAAAARRlvdqDGVDAIVGGVSSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655192887 324 LVKQLS---ARPQLPITTLALNYSETDQGPaqLFQFGLAAEDEAREVSRRARAD-GLHRAAAMVPRGEWGERVYKAFRQD 399
Cdd:pfam13458 81 VALAVAevlAKKGVPVIGPAALTGEKCSPY--VFSLGPTYSAQATALGRYLAKElGGKKVALIGADYAFGRALAAAAKAA 158
|
170 180 190
....*....|....*....|....*....|
gi 655192887 400 WEANGGQVMGVEYV----DQPVALAQQIAD 425
Cdd:pfam13458 159 AKAAGGEVVGEVRYplgtTDFSSQVLQIKA 188
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