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Conserved domains on  [gi|654551407|ref|WP_028019065|]
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MULTISPECIES: flagellar basal body rod protein FlgB [Enterobacterales]

Protein Classification

flagellar basal body rod protein FlgB( domain architecture ID 11448558)

flagellar basal body rod protein FlgB forms, together with FlgC and FlgF, the proximal portion of the central rod at the core of the flagellar organelle's basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-138 1.57e-57

Flagellar basal body rod protein FlgB [Cell motility];


:

Pssm-ID: 441420  Cd Length: 135  Bit Score: 175.09  E-value: 1.57e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAegtGVALAMTSSRHIPAQAMTA 80
Cdd:COG1815    1 MSILFDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSA---GLALATTNPRHIPGSAGSS 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 654551407  81 PTTDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQGGN 138
Cdd:COG1815   78 VSPEVLYRTPTQPSLDGNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
 
Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-138 1.57e-57

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 175.09  E-value: 1.57e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAegtGVALAMTSSRHIPAQAMTA 80
Cdd:COG1815    1 MSILFDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSA---GLALATTNPRHIPGSAGSS 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 654551407  81 PTTDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQGGN 138
Cdd:COG1815   78 VSPEVLYRTPTQPSLDGNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 5-135 3.02e-54

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 166.41  E-value: 3.02e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407    5 LDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAEGTGVALAMTSSRHIPAQAMTAPTTD 84
Cdd:TIGR01396   1 FSNAFGLLQQALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAELKKALDNERNSKLTLARTDTRPRHLNAQDSNSVEPS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 654551407   85 LLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQ 135
Cdd:TIGR01396  81 LQYDYTTQVKNDGNNVDIDQEMAELAQNQMHYQALTQFLNGKIKGLNYVLR 131
flgB PRK12626
flagellar basal body rod protein FlgB; Provisional
 1-137 1.31e-43

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183632  Cd Length: 162  Bit Score: 140.84  E-value: 1.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMER---GRAEGTGVALAM---------- 67
Cdd:PRK12626   1 MLDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDVDFASTLARALKQtdgGAAASNAAQLPMaqpagvtsgm 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  68 ----TSSRHIPAQAMTAPT-------TDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQG 136
Cdd:PRK12626  81 smasTAPGHMAGNVKLIPTggpsddyGRAQYRMPLQPALDGNTVDLDTERVQFADNALHYEAGMTVMTQQIKTMIAAITS 160


                 .
gi 654551407 137 G 137
Cdd:PRK12626 161 N 161
Flg_bb_rod pfam00460
Flagella basal body rod protein;
9-38 3.54e-07

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 43.71  E-value: 3.54e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 654551407    9 LRFQQEALNLRAQRQEILAANIANADTPGY 38
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
 
Name Accession Description Interval E-value
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-138 1.57e-57

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 175.09  E-value: 1.57e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAegtGVALAMTSSRHIPAQAMTA 80
Cdd:COG1815    1 MSILFDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSA---GLALATTNPRHIPGSAGSS 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 654551407  81 PTTDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQGGN 138
Cdd:COG1815   78 VSPEVLYRTPTQPSLDGNTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 5-135 3.02e-54

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 166.41  E-value: 3.02e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407    5 LDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAEGTGVALAMTSSRHIPAQAMTAPTTD 84
Cdd:TIGR01396   1 FSNAFGLLQQALDVRSLRQEVIANNIANVDTPGYKAKDVSFEAELKKALDNERNSKLTLARTDTRPRHLNAQDSNSVEPS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 654551407   85 LLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQ 135
Cdd:TIGR01396  81 LQYDYTTQVKNDGNNVDIDQEMAELAQNQMHYQALTQFLNGKIKGLNYVLR 131
flgB PRK12626
flagellar basal body rod protein FlgB; Provisional
 1-137 1.31e-43

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183632  Cd Length: 162  Bit Score: 140.84  E-value: 1.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMER---GRAEGTGVALAM---------- 67
Cdd:PRK12626   1 MLDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDVDFASTLARALKQtdgGAAASNAAQLPMaqpagvtsgm 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  68 ----TSSRHIPAQAMTAPT-------TDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQG 136
Cdd:PRK12626  81 smasTAPGHMAGNVKLIPTggpsddyGRAQYRMPLQPALDGNTVDLDTERVQFADNALHYEAGMTVMTQQIKTMIAAITS 160


                 .
gi 654551407 137 G 137
Cdd:PRK12626 161 N 161
flgB PRK12685
flagellar basal body rod protein FlgB; Reviewed
 1-136 9.67e-28

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 183682  Cd Length: 116  Bit Score: 98.72  E-value: 9.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSelkkVMergraegTGVALAMTSSRHIPAQamta 80
Cdd:PRK12685   1 MAINLDAALGVHPQTLDFRVERSKVLASNLANAETPGYKARDLDFKA----VM-------SQINAGMVPNQQYEAQ---- 65

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654551407  81 pttdllYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQG 136
Cdd:PRK12685  66 ------YRVPYQNSADGNTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAIEG 115
flgB PRK07182
flagellar basal body rod protein FlgB; Reviewed
 8-136 2.32e-27

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 75964 [Multi-domain]  Cd Length: 148  Bit Score: 98.80  E-value: 2.32e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   8 ALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVmERG--------RAEGTGVALAMTSSRHIPAQAMT 79
Cdd:PRK07182   8 ALGVHPMAMQLRLTRAELLSANLANVNTPNFQAKDIDFAAEMQRA-KRGngvmaapdRSSAQMLSTQMSSAQMSSPQMMS 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654551407  80 AP----TTDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQG 136
Cdd:PRK07182  87 SPqimsSPQIKYRLPYQPSLDGNTVALNVEQAEFSKNALDYQTSLSFLNMKLTGLKQAIEG 147
flgB PRK12619
flagellar basal body rod protein FlgB; Provisional
 1-136 7.84e-26

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183627  Cd Length: 130  Bit Score: 94.46  E-value: 7.84e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMErgraeGTGVALAMTSSRHIPAQAMTa 80
Cdd:PRK12619   1 MAINLDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMA-----GNSQQLRVTSDQHISTNADF- 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654551407  81 pTTDLLYRIPDQPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQG 136
Cdd:PRK12619  75 -MTHLKYRMTHHASLDGNTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTALKG 129
flgB PRK12620
flagellar basal body rod protein FlgB; Provisional
 14-136 3.17e-24

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183628  Cd Length: 132  Bit Score: 90.46  E-value: 3.17e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  14 EALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKvmerGRAEGTGVALAMTSSRHIpAQAMTAPTTDLLYRIPDQP 93
Cdd:PRK12620  14 DALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKS----AQGEQDGGLMQTTDAKHY-EVGGGGLNPFQITRESDQP 88

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 654551407  94 SLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQG 136
Cdd:PRK12620  89 SLDGNTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAITG 131
flgB PRK12621
flagellar basal body rod protein FlgB; Provisional
 16-137 3.84e-17

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 171613  Cd Length: 136  Bit Score: 72.48  E-value: 3.84e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  16 LNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGrAEGtgvALAMTSSRHIPAqAMTAPTTDLLYRIPDQPSL 95
Cdd:PRK12621  16 MDMQLQRQNVVMSNLANVNTPGYKPRELEFEKELQAALGLD-AKG---KMTRTEKNHLPA-VFDPEGFEPEWSKAFKPRV 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 654551407  96 --DGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVLQGG 137
Cdd:PRK12621  91 vhGEDRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTIIMEG 134
flgB PRK06003
flagellar basal body rod protein FlgB; Reviewed
 22-105 2.37e-12

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 168340  Cd Length: 126  Bit Score: 59.64  E-value: 2.37e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  22 RQEILAANIANADTPGYQARDIdfsSELKKVMERgraegTGVALAMTSSRHIPAQAMTAPTTDLlyRIPD----QPSldG 97
Cdd:PRK06003  20 RQATVAGNIANANTPGYRARDV---QPFADVLDK-----TGLTMAATSPGHLGASATGIDVTEA--RPDDswevTHS--G 87


                 ....*...
gi 654551407  98 NTVDMDRE 105
Cdd:PRK06003  88 NSVSLEQE 95
flgB PRK12627
FlgB family protein;
1-123 1.08e-09

FlgB family protein;


Pssm-ID: 237152 [Multi-domain]  Cd Length: 128  Bit Score: 52.81  E-value: 1.08e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   1 MLDKLDAaLRFQQEALNLRAQRQEILAANIANADTPGYQARDI-DFSSELkkvmergrAEGTGVALAMTSSRHIPAQAMT 79
Cdd:PRK12627   1 MFEKLEI-FRMASAMARHAGERQAVVARNVANADTPGYRARDLaDFAESY--------RAEGTTGMRATRPGHLNGAAAG 71

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 654551407  80 ApTTDLLYRIPDQPSLDGNTVDMDRE-------RTQFaDNSLK-YQTGLTLL 123
Cdd:PRK12627  72 A-ADPVVTDAGGPASPNGNSVSLEEEmlraveaKRQH-DRALAiYKSSMSLL 121
flgB PRK06004
flagellar basal body rod protein FlgB; Reviewed
 22-117 1.58e-09

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 235667  Cd Length: 127  Bit Score: 52.40  E-value: 1.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  22 RQEILAANIANADTPGYQARD-IDFSSELKKVMERGRAEGTGVALAMTSSRHIpAQAMTAPTTDLLYRIPDQPSLDGNTV 100
Cdd:PRK06004  12 RQKVLAENVANADTPGFRPRDlVEPKFDASGQAQAAGASTGGLGMMRTSASHM-APAGASPSFDARRGAGFETRPAGNAV 90

                         90
                 ....*....|....*..
gi 654551407 101 DMDRERTQFADNSLKYQ 117
Cdd:PRK06004  91 NLEDEMLKVSDNQMDYA 107
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 14-134 2.14e-09

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 52.10  E-value: 2.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  14 EALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERgraegtgVALAMTSSRHIpaqAMTAPTTDLLYRIPDQP 93
Cdd:PRK12623  18 KGLDASSYRGKVISNNIANVNTKGYKRHYVTFEENLKNNLDN-------LELKTTNEKHI---NDGVEFGQIKEKVDEST 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 654551407  94 SL--DGNTVDMDRERTQFADNSLKYQTGLTLLGGQIKGMMNVL 134
Cdd:PRK12623  88 SMrtDGNNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYVI 130
flgB PRK12624
flagellar basal body rod protein FlgB; Provisional
 13-116 6.29e-09

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 139107  Cd Length: 143  Bit Score: 51.22  E-value: 6.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  13 QEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAEG-TGVALAMTSSRHI----PAQAMTA-PTTDLL 86
Cdd:PRK12624  15 ERGMNNSIQKRKVISDNIANADVPHFKRSEVIFESMIKRAIESEKIEKeKEVPTQISDERHIqffkPLDYREVqPKTNLD 94

                         90       100       110
                 ....*....|....*....|....*....|
gi 654551407  87 YRIPDQPslDGNTVDMDRERTQFADNSLKY 116
Cdd:PRK12624  95 YLTTMRA--DGNNVDVEKEVVEASNSQMQY 122
flgB PRK12622
flagellar basal body rod protein FlgB; Provisional
 2-116 1.85e-08

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183629  Cd Length: 135  Bit Score: 49.54  E-value: 1.85e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   2 LDKLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAegTGVALAMTSSRHIPAQAMTAP 81
Cdd:PRK12622   1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKVTFESELERAILNEDK--NDLSLIRGNDKHLSGFKELGY 78

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 654551407  82 TTDLLYRIPDQPSL---DGNTVDMDRERTQFADNSLKY 116
Cdd:PRK12622  79 LDVKPHRMLDHLSTlnnNGNNVDIDSEMKALVQNQMMY 116
Flg_bb_rod pfam00460
Flagella basal body rod protein;
9-38 3.54e-07

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 43.71  E-value: 3.54e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 654551407    9 LRFQQEALNLRAQRQEILAANIANADTPGY 38
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgB PRK06797
flagellar basal body rod protein FlgB; Reviewed
 16-126 1.83e-05

flagellar basal body rod protein FlgB; Reviewed


Pssm-ID: 180697  Cd Length: 135  Bit Score: 41.54  E-value: 1.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  16 LNLRAQRQEILAANIANADTPGYQARDIDFSSELKK---VMERGRA-EGTGVALAMTSSRHIPAqAMTAPTTDLLYRIPD 91
Cdd:PRK06797  12 MNYLVTKRNTVSSNIANANTPGYKAQDVTFAEQMNKssaLYKSNAAdLKSNPDLYQTNEMHLPT-VNTKNTYAKIQTKSM 90

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 654551407  92 QPSLDGNTVDMDRERTQFADNSLKYQTGLTLLGGQ 126
Cdd:PRK06797  91 QTNKDGNSVDVTTEMLDLMKANQLYGISINAINTQ 125
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 15-66 2.62e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 39.16  E-value: 2.62e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 654551407   15 ALNLRAQRQEILAANIANADTPGYQARDIDFSSELKKVMERGRAEGTGVALA 66
Cdd:TIGR03506   9 GLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGSGQVGGGVRTS 60
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 1-49 6.30e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 37.43  E-value: 6.30e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 654551407   1 MLDKLDAALRFQQEALNLRAQRQEILAANIANAD----TPG---YQARDIDFSSEL 49
Cdd:PRK12782   1 MIDPLLASSRIASSGLEAQSTRLRVVSENLANAQstgrTPGadpYARKTVTFRAEL 56
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
18-72 1.35e-03

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 37.10  E-value: 1.35e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407  18 LRAQ--RQEILAANIANADTPGYQARDIDFSSELKKVMER-------------GRAEGTGVALAMTSSRH 72
Cdd:COG4786    8 MLAQqtRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRRpgapssqgtqtpvGLQLGTGVRVAATQTDF 77
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 15-62 2.19e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 35.94  E-value: 2.19e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 654551407  15 ALNLRAQRQEILAANIANADTPGYQARDIDFSSelkkvmERGRAEGTG 62
Cdd:PRK12632  14 GMRAQALRLRHVSENIANADTPGYRRKTVSFQE------ARDFDPGSG 55
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
18-63 2.51e-03

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 35.48  E-value: 2.51e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 654551407  18 LRAQRQ--EILAANIANADTPG------YQARDIDFSSelkkVMERGRAEGTGV 63
Cdd:COG1558   14 LTAQRLrlNVIASNLANANSTRtsdggpYRRKQVVFEA----VLDRAGSGAAGV 63
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 8-68 7.99e-03

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 35.05  E-value: 7.99e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654551407   8 ALRFQQEALNlraqrqeILAANIANADTPGYQARDIDFSSELKKVMER------GRAE---GTGVALAMT 68
Cdd:PRK12817  11 GMNAQQEKLD-------SISNNLANVNTTGYKREDVSFSDLVYETLDRkgyptnDKPEiitGTGVKATNW 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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