NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|654546472|ref|WP_028014178|]
View 

MULTISPECIES: glycine betaine/L-proline ABC transporter permease ProW [Enterobacter]

Protein Classification

glycine betaine/L-proline ABC transporter permease( domain architecture ID 10793507)

glycine betaine/L-proline ABC transporter permease is part of the ABC transporter complex involved in glycine betaine and proline betaine uptake

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
1-354 0e+00

proline/glycine betaine ABC transporter permease ProW;


:

Pssm-ID: 236805  Cd Length: 355  Bit Score: 644.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472   1 MADQSNPWGTTEAADSAAQSADAWGSTPAPADGGGAADWLNSAPAPAPEHFNIMDPFHKTLIPLDSWVTEGIDWVVTHFR 80
Cdd:PRK10952   2 MADQNNPWDTTPAADSAAQSADAWGTPAGAPTDGGGADWLNSAPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  81 PVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFGSAGMGVATLISLIAIGAIGAWSQAMITLALVLTALLFCI 160
Cdd:PRK10952  82 PVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 161 VIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA 240
Cdd:PRK10952 162 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 241 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 320
Cdd:PRK10952 242 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 654546472 321 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFTK 354
Cdd:PRK10952 322 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK 355
 
Name Accession Description Interval E-value
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
1-354 0e+00

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 644.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472   1 MADQSNPWGTTEAADSAAQSADAWGSTPAPADGGGAADWLNSAPAPAPEHFNIMDPFHKTLIPLDSWVTEGIDWVVTHFR 80
Cdd:PRK10952   2 MADQNNPWDTTPAADSAAQSADAWGTPAGAPTDGGGADWLNSAPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  81 PVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFGSAGMGVATLISLIAIGAIGAWSQAMITLALVLTALLFCI 160
Cdd:PRK10952  82 PVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 161 VIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA 240
Cdd:PRK10952 162 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 241 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 320
Cdd:PRK10952 242 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 654546472 321 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFTK 354
Cdd:PRK10952 322 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK 355
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 54-328 9.82e-139

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 394.85  E-value: 9.82e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  54 MDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFGSAGMGVATLISL 133
Cdd:COG4176    1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRLRGWRLALFTALGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 134 IAIGAIGAWSQAMITLALVLTALLFCIVIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVV 213
Cdd:COG4176   81 LLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 214 TIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQM 293
Cdd:COG4176  161 TVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQE 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 654546472 294 VLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVG 328
Cdd:COG4176  241 VLRALQRLDIGLGFEAGLAIVILAIILDRITQALG 275
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
62-324 5.03e-82

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 250.34  E-value: 5.03e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472   62 IPLDSWVTEGIDWVVTHFRPVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFG-SAGMGVATLISLIAIGAIG 140
Cdd:TIGR03416   4 IPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQrSWSLALFVLLGLLLIINQG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  141 AWSQAMITLALVLTALLFCIVIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 220
Cdd:TIGR03416  84 YWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIFAIP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  221 PIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 300
Cdd:TIGR03416 164 APIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRALNT 243

                         250       260
                  ....*....|....*....|....
gi 654546472  301 LDMGLATVGGVGIVILAIILDRLT 324
Cdd:TIGR03416 244 VNIALGFEAGLAIVVLAIVLDRMF 267
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 158-320 8.55e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 80.40  E-value: 8.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARS-PRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNV---------PGVVVTIIFALPPIIRLTI 227
Cdd:cd06261   14 LALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILALLLIAPFARLIRR 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 228 LGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLAT 307
Cdd:cd06261   94 AALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPG 173

                        170
                 ....*....|...
gi 654546472 308 VGGVGIVILAIIL 320
Cdd:cd06261  174 DLGVAAAVALILL 186
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 163-320 1.89e-17

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 79.27  E-value: 1.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  163 GLPMGIWLARSP--RAAKIIRPLLDAMQTTPAFVYLVPIVML-----FGIGNVPGVVVTIIFALPPIIRLTILGINQVPA 235
Cdd:pfam00528   1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  236 DLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI-AVGGLGQMVLRGIGRLDMGLATVGGVGIV 314
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 654546472  315 ILAIIL 320
Cdd:pfam00528 161 LILLLL 166
 
Name Accession Description Interval E-value
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
1-354 0e+00

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 644.84  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472   1 MADQSNPWGTTEAADSAAQSADAWGSTPAPADGGGAADWLNSAPAPAPEHFNIMDPFHKTLIPLDSWVTEGIDWVVTHFR 80
Cdd:PRK10952   2 MADQNNPWDTTPAADSAAQSADAWGTPAGAPTDGGGADWLNSAPAPAPEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  81 PVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFGSAGMGVATLISLIAIGAIGAWSQAMITLALVLTALLFCI 160
Cdd:PRK10952  82 PVFQGIRVPVDYILNGFQQLLLGMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 161 VIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA 240
Cdd:PRK10952 162 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 241 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 320
Cdd:PRK10952 242 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 321

                        330       340       350
                 ....*....|....*....|....*....|....
gi 654546472 321 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFTK 354
Cdd:PRK10952 322 DRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFIK 355
ProW COG4176
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 54-328 9.82e-139

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443335  Cd Length: 275  Bit Score: 394.85  E-value: 9.82e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  54 MDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFGSAGMGVATLISL 133
Cdd:COG4176    1 MDEPEDPKIPLGDWVDAAVDWLTDNFGGFFDAISDVLEGLLDGLEDLLLALPWWVVILLVAALAWRLRGWRLALFTALGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 134 IAIGAIGAWSQAMITLALVLTALLFCIVIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVV 213
Cdd:COG4176   81 LLIGNLGLWEEAMQTLALVLVAVLIALLIGIPLGILAARSDRVSRIVRPVLDFMQTMPAFVYLIPAVMLFGIGKVPGVIA 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 214 TIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQM 293
Cdd:COG4176  161 TVIFALPPAIRLTNLGIRQVPKELVEAADAFGATPWQLLFKVQLPLALPTIMAGVNQTIMLALSMVVIASMIGAGGLGQE 240

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 654546472 294 VLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVG 328
Cdd:COG4176  241 VLRALQRLDIGLGFEAGLAIVILAIILDRITQALG 275
ABC_choXWV_perm TIGR03416
choline ABC transporter, permease protein;
62-324 5.03e-82

choline ABC transporter, permease protein;


Pssm-ID: 188318  Cd Length: 267  Bit Score: 250.34  E-value: 5.03e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472   62 IPLDSWVTEGIDWVVTHFRPVFQGIRIPVDYILNGFQQLMLGMPAPVAIILFSLIAWQFG-SAGMGVATLISLIAIGAIG 140
Cdd:TIGR03416   4 IPIGAWAKSFVDWLTDNGAFFFDALAAVLESMIDGLLDLLQAPPPLLLIAIFAALAWWLQrSWSLALFVLLGLLLIINQG 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  141 AWSQAMITLALVLTALLFCIVIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALP 220
Cdd:TIGR03416  84 YWKETTETLALVLSATVVCMVIGVPLGIAAAHRPWLYAAMRPVLDLMQTLPTFVYLIPALVLFGLGMVPGLIATVIFAIP 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  221 PIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGR 300
Cdd:TIGR03416 164 APIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYALPQIMAGLTQTIMLSLSMVVIAALVGADGLGVPVVRALNT 243

                         250       260
                  ....*....|....*....|....
gi 654546472  301 LDMGLATVGGVGIVILAIILDRLT 324
Cdd:TIGR03416 244 VNIALGFEAGLAIVVLAIVLDRMF 267
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 160-337 7.48e-46

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 155.60  E-value: 7.48e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 160 IVIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIE 239
Cdd:COG1174   35 LLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVE 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 240 ASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAII 319
Cdd:COG1174  115 AARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDGLQLNNTALILAGAILVALLALL 194

                        170
                 ....*....|....*...
gi 654546472 320 LDRLTQAVGRDSRSRGNR 337
Cdd:COG1174  195 VDLLLALLERLLTPRGLR 212
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 106-329 9.68e-36

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 130.27  E-value: 9.68e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 106 APVAIILFSLIAWQFGSAGMGV------------ATLISLIAIGAIgaWSQAMITLALVLTALLFCIVIGLPMGIWLARS 173
Cdd:COG0600   14 LPLLSLALLLALWELAARLGLVppfllpspsavlAALVELLASGEL--WEHLLASLLRVLLGFALAALLGVPLGLLLGLS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 174 PRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLF 253
Cdd:COG0600   92 RLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILR 171

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654546472 254 KVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG-GLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGR 329
Cdd:COG0600  172 KVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASsGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLLER 248
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 158-320 8.55e-18

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 80.40  E-value: 8.55e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARS-PRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNV---------PGVVVTIIFALPPIIRLTI 227
Cdd:cd06261   14 LALVLGLLLGIILARKrGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGwgilpglglPALILALLLIAPFARLIRR 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 228 LGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLAT 307
Cdd:cd06261   94 AALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPG 173

                        170
                 ....*....|...
gi 654546472 308 VGGVGIVILAIIL 320
Cdd:cd06261  174 DLGVAAAVALILL 186
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 163-320 1.89e-17

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 79.27  E-value: 1.89e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  163 GLPMGIWLARSP--RAAKIIRPLLDAMQTTPAFVYLVPIVML-----FGIGNVPGVVVTIIFALPPIIRLTILGINQVPA 235
Cdd:pfam00528   1 GIPLGIIAALRRgrRLDRLLRPLIDLLQALPSFVLAILLVVIailsiLGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  236 DLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI-AVGGLGQMVLRGIGRLDMGLATVGGVGIV 314
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgSWPGLGLLLIEAILGYDYPEIQGPVLAAA 160


                  ....*.
gi 654546472  315 ILAIIL 320
Cdd:pfam00528 161 LILLLL 166
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 158-329 3.56e-13

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 68.60  E-value: 3.56e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLAR-SPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTII-----FALPPIIRLTILGIN 231
Cdd:COG1177   76 LATVLGTPAALALARyRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLIlahvvFTLPFVVLVVLARLQ 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 232 QVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGG-------LGQMVLRGIGRLDMG 304
Cdd:COG1177  156 GFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvttlpvyIYSMIRRGISPEINA 235

                        170       180
                 ....*....|....*....|....*
gi 654546472 305 LATVGGVGIVILAIILDRLTQAVGR 329
Cdd:COG1177  236 LSTLLILLSLLLLLLAERLRRRGER 260
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 158-328 2.27e-12

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 65.46  E-value: 2.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWL--------ARSPRAAKIIRPLLDAMQTTPAFVYLVPIV----MLFG--IGNVPGVVVTIIFALPPII 223
Cdd:COG2011   29 IAVLLGLPLGVLLvltrpgglLPNPVLYRVLGVIVNIFRSIPFIILLVALIpltrLIVGtsIGTTAAIVPLTIAAIPFFA 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 224 RLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLR-GIGRLD 302
Cdd:COG2011  109 RLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAGAVGGGGLGDLAIRyGYQRFD 188

                        170       180
                 ....*....|....*....|....*.
gi 654546472 303 MGLATVggvgIVILAIILDRLTQAVG 328
Cdd:COG2011  189 TDVMLV----TVVILIVLVQIIQFLG 210
PRK10160 PRK10160
taurine ABC transporter permease TauC;
160-329 3.60e-12

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 65.96  E-value: 3.60e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 160 IVIGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIE 239
Cdd:PRK10160  95 VVIGIPVGIAMGLSPTVRGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIR 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 240 ASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVG-GLGQMVLRGIGRLDMGLATVGGVGIVILAI 318
Cdd:PRK10160 175 AAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAELIAATrGLGFMVQSAGEFLATDVVLAGIAVIAIIAF 254

                        170
                 ....*....|.
gi 654546472 319 ILDRLTQAVGR 329
Cdd:PRK10160 255 LLELGLRALQR 265
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 158-320 2.30e-10

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 60.55  E-value: 2.30e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSPRAAkiiRPLLDAMQTTPAFV-YLV---------------------------PIVMLFgigNVP 209
Cdd:COG1176   82 ICLLLGYPIAYFLARAPPRW---RNLLLLLVILPFWTsFLVrtyawivllgrngllnslllalglidePLRLLY---TEF 155

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 210 GVVVTIIFALPPIIRLTILG-INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIavG 288
Cdd:COG1176  156 AVVIGLVYVYLPFMVLPLYAaLEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--G 233

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 654546472 289 GLGQMVL------RGIGRLDMGLATVggVGIVILAIIL 320
Cdd:COG1176  234 GGKVLMIgnliyqQFLSALNWPLAAA--LAVVLLLIVL 269
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
158-353 1.05e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 59.79  E-value: 1.05e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSP-RAAKIIRPLLDAMQTTPAFVYLVPIVMLFG-------------------IGNVPGVV-VTII 216
Cdd:COG1178   69 LSLLLGVPLAWLLARTDfPGRRLLRWLLLLPLALPPYVVALAWIALFGpngllntllralfgleppdIYGLGGIIlVLVL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 217 FALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIavGGLGQMVLR 296
Cdd:COG1178  149 FNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GGGYTTLTT 226

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 654546472 297 GI-----GRLDMGLATVGGV---GIVILAIILDRLTQAVGRDSRSRGNRRWYTTGPVGLLTRPFT 353
Cdd:COG1178  227 AIyqawlGDFDLGAAAALALvllLLVLLLLLLERRLRRRRRYATVGGRARRPRRVKLGRWRWLAL 291
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
158-293 4.80e-09

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 55.89  E-value: 4.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWL--------ARSPRAAKIIRPLLDAMQTTPAFVYLVPIV----MLFG--IGNVPGVVVTIIFALPPII 223
Cdd:PRK10782  26 FGFVIGLPVGVLLyvtrpgqiIANAKLYRTLSALVNIFRSIPFIILLVWMIpftrVIVGtsIGLQAAIVPLTVGAAPFIA 105

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 224 RLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQM 293
Cdd:PRK10782 106 RMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQI 175
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 167-320 1.27e-08

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 56.39  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 167 GIWLARSPRAAKIIRPLLDAMQTTPAFVYLvPIVMLFGI----GNVPGVVVTIIFALppiirLT------ILGINQ---- 232
Cdd:COG4986   85 ATLAAKSRRAEKILIPLLDILQSVPVLGFL-SFTVTFFIalfpGSLLGVELAAIFAI-----FTsqawnmAFSFYQslrt 158

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 233 VPADLIEASRSFGASPRQMLFKVQLPLAMPtimaGVNQTLMLALS----MVVIASMIAVGGLgQMVLRGIGRLdMGLAT- 307
Cdd:COG4986  159 VPRDLDEAARIFRLSGWQRFWRLELPFAMP----GLVWNSMMSMSggwfFLVASEAISVGNQ-DIRLPGIGSY-LALAIa 232

                        170
                 ....*....|....*.
gi 654546472 308 ---VGGVGIVILAIIL 320
Cdd:COG4986  233 qgdLGAIGWAILAMLV 248
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 198-276 2.16e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 54.62  E-value: 2.16e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 654546472 198 PIVMLFGIGNVpgVVVTIIFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL 276
Cdd:PRK15050 154 PLDFLYSPGGV--ILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTL 230
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
162-344 3.31e-08

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 53.79  E-value: 3.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 162 IGLPMGIWLARSPRAAKIIRPLLDAMQTTPAFVyLVPIVML-FGIGNVPGVVVTIIFALPPIIRLTILGINQVPADLIEA 240
Cdd:PRK11365  79 LGLILGLISGLSRWGERLLDTSIQMLRNVPHLA-LIPLVILwFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEM 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 241 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGlgqmvlrGIGRLDMGLATVGGVGIVILAIIL 320
Cdd:PRK11365 158 ARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANS-------GIGYLAMNAREFLQTDVVVVAIIL 230

                        170       180
                 ....*....|....*....|....
gi 654546472 321 DRLTQAVGRDSRSRGNRRWYTTGP 344
Cdd:PRK11365 231 YALLGKLADVSAQLLERLWLRWNP 254
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 158-327 4.21e-08

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 53.31  E-value: 4.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  158 FCIVIGLPMGIWLAR----SPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQV 233
Cdd:TIGR01097  73 LAAVLAVPLALLAARnitpSPWLYGLARLLLNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEV 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  234 PADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGI 313
Cdd:TIGR01097 153 DPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIGLELDTAIGLFDYDEVSAIILVI 232

                         170
                  ....*....|....
gi 654546472  314 VILAIILDRLTQAV 327
Cdd:TIGR01097 233 LVVVVIIDLISARL 246
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 159-268 6.70e-08

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 53.01  E-value: 6.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472  159 CIVIGLPMG----IWL---ARSPRAAKIIRPLLDAMQTTPAFVY-------LVPIVMLFGIGNVPGVVVTIIFALPPIIR 224
Cdd:TIGR00974  66 AIVIAVPLGigaaIYLaeyANGSRFTKIIRFAVDILAGVPSIVVglfgygfFVLTYLGGGFSLLAGALALALLILPVIIR 145

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 654546472  225 LTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGV 268
Cdd:TIGR00974 146 TTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGI 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
158-320 9.08e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 50.54  E-value: 9.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSP-RAAKIIRPLLDAMQTTPAFV----YLVPIVMLFGIGNVPG----VVVTIIFALPPIIRLTIL 228
Cdd:COG1178  353 LAVLLALLLAYLVRRRRgRLARLLDRLAMLPYAVPGIVlglgLLLLFNRPLPLLLYGTlailVLAYVVRFLPFALRSLEA 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 229 GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVnqTLMLALSM--VVIASMIAVGG---LGQMVLRGIGRLDM 303
Cdd:COG1178  433 ALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAA--LLVFVTSMkeLSATLLLRPPGfetLAVLIYQLASSGRY 510

                        170
                 ....*....|....*..
gi 654546472 304 GLATVGGVGIVILAIIL 320
Cdd:COG1178  511 GEAAALALLLVLVSLLP 527
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 160-327 1.27e-06

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 48.92  E-value: 1.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 160 IVIGLPMGIW----LARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLTILGINQVPA 235
Cdd:COG3639   68 AVLALPLAFLaarnLAPNPWVRLLARRLLNVLRAIPELVWALIFVAAVGLGPFAGVLALAIHTIGFLGKLFAEAIEEIDP 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 236 DLIEASRSFGASPRQMLFKVQLPLAMPTIMAgvnQTLM---LALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVG 312
Cdd:COG3639  148 GPVEALRATGASRLQVIRYGVLPQVLPQFLS---YTLYrfeINIRAATVLGLVGAGGIGLLLNEAIRLFQYDEVAAILLV 224

                        170
                 ....*....|....*
gi 654546472 313 IVILAIILDRLTQAV 327
Cdd:COG3639  225 ILVLVLLIDLLSARL 239
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 158-277 1.42e-06

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 48.98  E-value: 1.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSP-RAAKIIRPLLDAMQTTPAFVYLVPIVMLFG----IGN------------VPGVVVTIIF-AL 219
Cdd:COG0555   69 INLVFGLPLAWVLVRYRfPGKRLVDALVDLPFALPTAVAGIALLLLFGpngwLGQllaplgikvaftPLGIVLAQTFvSL 148

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 654546472 220 PPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALS 277
Cdd:COG0555  149 PFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALG 206
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
229-320 4.05e-06

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 47.82  E-value: 4.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 229 GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQ--------MVLRGIGR 300
Cdd:COG1175  187 GLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNstttlvlyIYQTAFQQ 266

                         90       100
                 ....*....|....*....|
gi 654546472 301 LDMGLATVGGVGIVILAIIL 320
Cdd:COG1175  267 FDFGYASAIAVVLFLIILVL 286
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 158-283 9.88e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 9.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSPRAA-KIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIIRLT---ILGINQv 233
Cdd:COG1173   91 IALVIGVLLGLLAGYFGGWVdAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVraqVLSLRE- 169

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 654546472 234 pADLIEASRSFGASPRQMLFKVQLPLAMPTIMagVNQTLMLALSMVVIAS 283
Cdd:COG1173  170 -REYVEAARALGASPLRIIFRHILPNVLPPLI--VQATLGIASAILAEAG 216
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 175-283 1.39e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 43.05  E-value: 1.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 175 RAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVT-----IIFALPPIIrLTILG-INQVPADLIEASRSFGASP 248
Cdd:PRK09500  90 RGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSllfahITFCLPFVV-VTVYSrLKGFDVRMLEAAKDLGASE 168

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 654546472 249 RQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIAS 283
Cdd:PRK09500 169 FTILRKIILPLALPAVAAGWLLSFTLSLDDVVVSS 203
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 158-266 4.08e-04

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 41.62  E-value: 4.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSP-RAAKIIRPLLDAMQTTPAFVYLVPIVMLFG----IGNVPGVVVT-IIFALPPIIRLTILGIN 231
Cdd:COG0395   89 LSLLLSSLAAYALARFRfRGRKLLFLLILATLMIPGQVLLIPLYLLFRqlglLNTYWGLILPyLAFGLPFGIFLLRQFFR 168

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 654546472 232 QVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMA 266
Cdd:COG0395  169 SIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 158-285 4.09e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 41.60  E-value: 4.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSPRAakiIRPLLDAMQTTPAFV-----------------YLVPIVMLFGIGNVP--------GVV 212
Cdd:PRK09497  78 ACLVLGYPFAWFLAKLPHK---VRPLLLFLLIVPFWTnsliriyglkiflstkgYLNEFLLWLGVIDTPirimftesAVI 154

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 654546472 213 VTIIFALPPIIRLTIL-GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMI 285
Cdd:PRK09497 155 IGLVYILLPFMVLPLYsSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLL 228
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 158-267 1.67e-03

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 40.21  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLARSPRAAKIIRPLldaMQTTPAFvylvPIVMLFgignvPGVVVTII-FALPPIIRLTIL-------- 228
Cdd:COG4986  384 LASLIWVPVGVWIGLRPRLARRLQPV---AQFLASF----PANLLF-----PVAVLLIVrFGLNPNIWLSPLmilgtqwy 451

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 654546472 229 -------GINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 267
Cdd:COG4986  452 ilfnviaGASAIPNDLREAARNFGLRGWLWWRRLILPGIFPYYVTG 497
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 158-321 2.50e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 39.28  E-value: 2.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 158 FCIVIGLPMGIWLA--RSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIG-----------NVPGVVVTIIFALPPIIR 224
Cdd:COG0601  108 LALLIGIPLGILAAlrRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKlgwlpvsgrvsPWEDFLDALRHLILPALT 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 225 LTILG------------INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVnqTLMLALSM---VVIASMIAVGG 289
Cdd:COG0601  188 LALGSlagiarltrssmLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVL--GLQLGGLLggaVVVETVFSWPG 265

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 654546472 290 LGQMVLRGIGRLD----MGLATVGGVGIVILAIILD 321
Cdd:COG0601  266 LGRLLVDAILNRDypvvQGIVLLIAVLVVLVNLLVD 301
modB PRK09421
molybdate ABC transporter permease subunit;
216-268 5.17e-03

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 37.98  E-value: 5.17e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 654546472 216 IFALPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGV 268
Cdd:PRK09421 101 VMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153
cysT CHL00187
sulfate transport protein; Provisional
 210-295 5.53e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 37.69  E-value: 5.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546472 210 GVVVTIIFA-LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL----SMVVIASM 284
Cdd:CHL00187 139 GVLLAMIFVsFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIgeygSIVIISSN 218

                         90
                 ....*....|.
gi 654546472 285 IAVGGLGQMVL 295
Cdd:CHL00187 219 IPFKDLVASVL 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH