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Conserved domains on  [gi|654546348|ref|WP_028014054|]
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MULTISPECIES: zinc ribbon domain-containing protein [Enterobacter]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 10537594)

zinc ribbon domain-containing protein similar to Escherichia coli YfgJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 5-68 1.40e-27

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


:

Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 94.26  E-value: 1.40e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 654546348   5 CPDCQAQLEPLNGAAHCDSCNKDIALEARCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEF 68
Cdd:pfam07191  1 CPKCQQELEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 5-68 1.40e-27

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 94.26  E-value: 1.40e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 654546348   5 CPDCQAQLEPLNGAAHCDSCNKDIALEARCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEF 68
Cdd:pfam07191  1 CPKCQQELEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
PRK14714 PRK14714
DNA-directed DNA polymerase II large subunit;
4-41 1.16e-03

DNA-directed DNA polymerase II large subunit;


Pssm-ID: 237798 [Multi-domain]  Cd Length: 1337  Bit Score: 35.44  E-value: 1.16e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 654546348    4 TCPDCQAQLEPLNgaaHCDSCNKDI----ALEARCPECHQPL 41
Cdd:PRK14714  681 RCPDCGTHTEPVY---VCPDCGAEVppdeSGRVECPRCDVEL 719
 
Name Accession Description Interval E-value
zinc-ribbons_6 pfam07191
zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around ...
 5-68 1.40e-27

zinc-ribbons; This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.


Pssm-ID: 429341 [Multi-domain]  Cd Length: 64  Bit Score: 94.26  E-value: 1.40e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 654546348   5 CPDCQAQLEPLNGAAHCDSCNKDIALEARCPECHQPLQVLKACGAVDYFCQNGHGLISKKRVEF 68
Cdd:pfam07191  1 CPKCQQELEWRGGHYHCEACQEDFKLVALCPDCGQPLEVLKACGAVDYFCNHCNELISKKRVEF 64
PRK14714 PRK14714
DNA-directed DNA polymerase II large subunit;
4-41 1.16e-03

DNA-directed DNA polymerase II large subunit;


Pssm-ID: 237798 [Multi-domain]  Cd Length: 1337  Bit Score: 35.44  E-value: 1.16e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 654546348    4 TCPDCQAQLEPLNgaaHCDSCNKDI----ALEARCPECHQPL 41
Cdd:PRK14714  681 RCPDCGTHTEPVY---VCPDCGAEVppdeSGRVECPRCDVEL 719
ligA PRK07956
NAD-dependent DNA ligase LigA; Validated
 34-57 7.80e-03

NAD-dependent DNA ligase LigA; Validated


Pssm-ID: 236137 [Multi-domain]  Cd Length: 665  Bit Score: 32.79  E-value: 7.80e-03
                         10        20
                 ....*....|....*....|....
gi 654546348  34 CPECHQPLqvLKACGAVDYFCQNG 57
Cdd:PRK07956 407 CPVCGSEL--VRVEGEAVLRCTNG 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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