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Conserved domains on  [gi|653801353|ref|WP_027688569|]
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ABC transporter permease [Rhizobium ruizarguesonis]

Protein Classification

ABC transporter permease( domain architecture ID 10003093)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 20-304 4.49e-79

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


:

Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 241.59  E-value: 4.49e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  20 RRPLPPWvsttALLLPTYGWLTLAVFLPLLTMFVFSFMSATPMGKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTL 99
Cdd:COG1176    6 RRRLRPL----LLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 100 FCAVLGFLAAVALVRSTfGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVG 179
Cdd:COG1176   82 ICLLLGYPIAYFLARAP-PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 180 LVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTM 259
Cdd:COG1176  161 LVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 653801353 260 GTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRRGTVA 304
Cdd:COG1176  241 GNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 20-304 4.49e-79

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 241.59  E-value: 4.49e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  20 RRPLPPWvsttALLLPTYGWLTLAVFLPLLTMFVFSFMSATPMGKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTL 99
Cdd:COG1176    6 RRRLRPL----LLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 100 FCAVLGFLAAVALVRSTfGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVG 179
Cdd:COG1176   82 ICLLLGYPIAYFLARAP-PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 180 LVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTM 259
Cdd:COG1176  161 LVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 653801353 260 GTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRRGTVA 304
Cdd:COG1176  241 GNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 37-289 1.52e-39

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 140.62  E-value: 1.52e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  37 YGWLTLAVFLPLLTMFVFSFMS---ATPM---------GKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVL 104
Cdd:PRK10683  37 YLWLILLFLLPFLIVFKISLAEmarAIPPytdlmewadGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 105 GFLAAVALVRSTfGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVGLVHGY 184
Cdd:PRK10683 117 GYPLAWAVAHSK-PSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAY 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 185 LPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTMGTVIE 264
Cdd:PRK10683 196 LPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLW 275

                        250       260
                 ....*....|....*....|....*
gi 653801353 265 DQFTQAFNWPLGASLSFTLLAVVLA 289
Cdd:PRK10683 276 QEFFNNRDWPVASAVAIIMLLLLIV 300
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 30-300 1.37e-11

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 64.70  E-value: 1.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353   30 TALLLPTYGWLTLAVFLPLLTMFVFSFMSatpmgKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVLGFLAA 109
Cdd:TIGR03262   4 RLLLAGMILALLLFLLLPLLALLTKSVYD-----SDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  110 VALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHmiapdAGSIgflYTRYAVVVGLVHGYLPYMI 189
Cdd:TIGR03262  79 YALTRSRI-PGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLG-----GFSI---YGFWGIVIGEVFYTFPHAL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  190 LTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVtMGTVIEDQFTQ 269
Cdd:TIGR03262 150 MILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNV-LATDIYKQVIG 228

                         250       260       270
                  ....*....|....*....|....*....|.
gi 653801353  270 AFNWPLGASLSFTLLAVVLAIFATFSGVLRR 300
Cdd:TIGR03262 229 QQNFPMGAVVGVLLLLPALLAFGIDRAIQRR 259
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 88-290 2.39e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.53  E-value: 2.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  88 ITSLLIGFWTTLFCAVLGFLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPdagsi 167
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 168 gflytryaVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFME 247
Cdd:cd06261   76 --------ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 653801353 248 PRILGGRVGVTMGTVIEDQFTQAFNWPLGASLSFTLLAVVLAI 290
Cdd:cd06261  148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 159-294 4.82e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 49.22  E-value: 4.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  159 MIAPDAGSIGFLYTRYAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIF 238
Cdd:pfam00528  38 LLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAF 117

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 653801353  239 IPVIGSFMEPRILGGRVGVTMgTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATF 294
Cdd:pfam00528 118 GGALGGAVLLEFLGSWPGLGL-LLIEAILGYDYPEIQGPVLAAALILLLLNLLVDI 172
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 20-304 4.49e-79

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 241.59  E-value: 4.49e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  20 RRPLPPWvsttALLLPTYGWLTLAVFLPLLTMFVFSFMSATPMGKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTL 99
Cdd:COG1176    6 RRRLRPL----LLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 100 FCAVLGFLAAVALVRSTfGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVG 179
Cdd:COG1176   82 ICLLLGYPIAYFLARAP-PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 180 LVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTM 259
Cdd:COG1176  161 LVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 653801353 260 GTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRRGTVA 304
Cdd:COG1176  241 GNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 37-289 1.52e-39

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 140.62  E-value: 1.52e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  37 YGWLTLAVFLPLLTMFVFSFMS---ATPM---------GKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVL 104
Cdd:PRK10683  37 YLWLILLFLLPFLIVFKISLAEmarAIPPytdlmewadGQLSITLNLGNFLQLTDDPLYFDAYLQSLQVAAISTLCCLLI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 105 GFLAAVALVRSTfGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVGLVHGY 184
Cdd:PRK10683 117 GYPLAWAVAHSK-PSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAY 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 185 LPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTMGTVIE 264
Cdd:PRK10683 196 LPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLW 275

                        250       260
                 ....*....|....*....|....*
gi 653801353 265 DQFTQAFNWPLGASLSFTLLAVVLA 289
Cdd:PRK10683 276 QEFFNNRDWPVASAVAIIMLLLLIV 300
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 36-292 5.10e-39

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 138.67  E-value: 5.10e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  36 TYGWLTLAVFLPLLTMFVFSFMSATPMGKAPIIFTLKQYRAFIDqPYLVGIGITSLLIGFWTTLFCAVLGFLAAVALVRS 115
Cdd:PRK09497  15 IVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLD-PLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKL 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 116 TfGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVGLVHGYLPYMILTCYIA 195
Cdd:PRK09497  94 P-HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYILLPFMVLPLYSS 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 196 LMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTMGTVIEDQFTQAFNWPL 275
Cdd:PRK09497 173 IEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIRDWPF 252

                        250
                 ....*....|....*...
gi 653801353 276 GASLSFTL-LAVVLAIFA 292
Cdd:PRK09497 253 GAATSITLtIVMGLMLLV 270
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
15-304 2.52e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 122.58  E-value: 2.52e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  15 SGPRSRRPLPPWVSTTALLLptygwltLAVFLPLLTMFVFSFMSAtpmgkapiiftLKQYRAFIDQPYLVGIGITSLLIG 94
Cdd:COG1178    2 STRPRRRPRLLLLLLALLLA-------LLVLLPLLALLLRAFTDG-----------LANFWALLSDPYLWRALGNTLLLA 63

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  95 FWTTLFCAVLGFLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHmiAPDAGSIGFLYTRY 174
Cdd:COG1178   64 LLVTLLSLLLGVPLAWLLARTDF-PGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLR--ALFGLEPPDIYGLG 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 175 AVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGR 254
Cdd:COG1178  141 GIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGG 220

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 653801353 255 VGvTMGTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRRGTVA 304
Cdd:COG1178  221 YT-TLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYA 269
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 32-301 2.39e-28

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 109.82  E-value: 2.39e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  32 LLLPTYGWLTLA-VFLPLLTMFVFSFMSATPMGKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVLGFLAAV 110
Cdd:COG1177    7 LLLRLFLALVLLfLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 111 ALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLhmiapdagsigflytryAVVVGLVHGYLPYMIL 190
Cdd:COG1177   87 ALARYRF-RGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW-----------------GLILAHVVFTLPFVVL 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 191 TCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVTMGTVIEDQFTQA 270
Cdd:COG1177  149 VVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRG 228

                        250       260       270
                 ....*....|....*....|....*....|.
gi 653801353 271 FNwPLGASLSFTLLAVVLAIFATFSGVLRRG 301
Cdd:COG1177  229 IS-PEINALSTLLILLSLLLLLLAERLRRRG 258
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-301 2.41e-24

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 99.82  E-value: 2.41e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353   7 TSASERGPSGPRSRRPLPPWvsttALLLPTYGWLTLAVFLPLLTMFVFSFMSATPMGKAPIIFTLKQYRAFIDQPYLVGI 86
Cdd:COG1175    2 TTTTSAAARRRRRRRRLAAY----LFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  87 GITSLLIGFWTTLFCAVLGFLAAVALVRSTFGKTreMLLILILLPFWTNGLVRVFSWTMVLREN-GFLDSLLHMIapDAG 165
Cdd:COG1175   78 LGNTLLFTVVSVPLQLVLGLLLALLLNRKLRGRG--FFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGAL--GLE 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 166 SIGFLYTR----YAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPV 241
Cdd:COG1175  154 PINWLGDPslalPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGA 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 653801353 242 IGSFMEPRIL--GGRVGVT--MGTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRRG 301
Cdd:COG1175  234 LQVFDLVYVLtgGGPGNSTttLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-300 1.26e-20

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 91.76  E-value: 1.26e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353   5 RLTSASERGPSGPRSRRPLPPWVSTTALLLptYGWLTLAVFLPLLTMFVFSFMSATPMGkapiiFTLKQYRAFIDQPYLV 84
Cdd:COG1178  265 RRRYATVGGRARRPRRVKLGRWRWLALALC--LLLVLLGLLLPLLALLLWSLTKALDDN-----LTLDNYRFVLLDPSLL 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  85 GIGITSLLIGFWTTLFCAVLGFLAAVALVRSTFGKTReMLLILILLPFWTNGLVRVFSWTMVLRENGFLdsllhmiaPDA 164
Cdd:COG1178  338 RALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLAR-LLDRLAMLPYAVPGIVLGLGLLLLFNRPLPL--------LLY 408

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 165 GSIGFLYTRYAVVvglvhgYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGS 244
Cdd:COG1178  409 GTLAILVLAYVVR------FLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE 482

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 653801353 245 FMEPRILGGRVGVTMGTVIEdQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRR 300
Cdd:COG1178  483 LSATLLLRPPGFETLAVLIY-QLASSGRYGEAAALALLLVLVSLLPVLLLERLLGR 537
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 19-245 1.15e-18

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 83.65  E-value: 1.15e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  19 SRRPLPPWVSTTALLLptyGWLTLAVFLPLLTMFVFSFMsatpmgkapiiFTLKQYRAFIDQPYLVGIGITSLLIGFWTT 98
Cdd:COG0555    2 SRRVLPGFGLTLGLTL---LYLSLIVLLPLAALVLKAAG-----------LGWAEFWAVLTSPRVLAALKLSLGTALIAA 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  99 LFCAVLGFLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIapdagSIGFLYTRYAVVV 178
Cdd:COG0555   68 LINLVFGLPLAWVLVRYRF-PGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPL-----GIKVAFTPLGIVL 141

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653801353 179 GLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSF 245
Cdd:COG0555  142 AQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 15-251 9.33e-17

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 78.60  E-value: 9.33e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  15 SGPRSRRPLPPWVSTTALLLptygwLTLAVFLPLLTMFVFSFMS-----ATPMGKAPIIFTLKQYR-AFIDQPYLVGIGI 88
Cdd:COG0395    4 TARRRRRRLGRILLYLLLIL-----LALLFLFPLYWMVVTSFKPpaeifSGPPSLLPSEFTLENYRaAFTDGPFGRYLLN 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  89 tSLLIGFWTTLFCAVLGFLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGsig 168
Cdd:COG0395   79 -SLIVAVVSTVLSLLLSSLAAYALARFRF-RGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLA--- 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 169 flytryavvvglvhGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEP 248
Cdd:COG0395  154 --------------FGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWP 219


                 ...
gi 653801353 249 RIL 251
Cdd:COG0395  220 LIL 222
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 5-300 1.30e-16

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 78.51  E-value: 1.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353   5 RLTSASERGPSGPRSRRPLPPWVsttaLLLPTYGWLTLAVFLPLLTMFVFSFMSATPMGKAPiiftlkqYRAFIDQPYLV 84
Cdd:PRK15050   4 RVRASAAAHAAAARRRRRLRPLL----WLLLPLLVLAPLVVYPLVRVVLQSLTGEHGLGLAT-------YRAVLGSPDFR 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  85 GIGITSLLIGFWTTLFCAVLGFLAAVALVRSTFGKTR---EMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMia 161
Cdd:PRK15050  73 GALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASlvgRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGL-- 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 162 pDAGSIGFLYTRYAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPV 241
Cdd:PRK15050 151 -EAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLT 229

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 653801353 242 IGSFMEPRILGGRVGVTMGTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATFSGVLRR 300
Cdd:PRK15050 230 LNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYRRVNRR 288
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 90-238 3.62e-16

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 75.86  E-value: 3.62e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  90 SLLIGFWTTLFCAVLGFLAAVALVRSTFgKTREMLLILILLPFwtnglvrVFSWT-------MVLRENGFLDSLLHmiap 162
Cdd:COG4149   12 SLKVALIATLLLLLLGIPLAWWLARTRF-RGKGLLEALVTLPL-------VLPPTvlgfyllLLFGRNGPLGQLLE---- 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 653801353 163 DAGSIGFLYTRYAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIF 238
Cdd:COG4149   80 ELFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAF 155
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 17-238 2.85e-13

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 68.68  E-value: 2.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  17 PRSRRPLPPWvsttALLLPTYGWLTLAVFLPLLTMFVFSFMSATpmgkapIIFTLKQYRAFIDQPYLVGIGItSLLIGFW 96
Cdd:COG4132    6 RRRRRKWLAW----LGLLPFFLFVLLFLLLPTVWVVIGAFQDDD------GGFTLANYAELTSPFYLQAFWN-SIWLSLA 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  97 TTLFCAVLGFLAAVALVRSTFGKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAV 176
Cdd:COG4132   75 SALIGAVIGLLLAYALRRGGPGWLRRAVLAFSGVASNFAGVPLAFAFIATLGRNGLVTLLLKQLGIDLYDGFNLYSFWGL 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 653801353 177 VVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIF 238
Cdd:COG4132  155 ILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLF 216
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 30-300 1.37e-11

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 64.70  E-value: 1.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353   30 TALLLPTYGWLTLAVFLPLLTMFVFSFMSatpmgKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVLGFLAA 109
Cdd:TIGR03262   4 RLLLAGMILALLLFLLLPLLALLTKSVYD-----SDGDFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFA 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  110 VALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHmiapdAGSIgflYTRYAVVVGLVHGYLPYMI 189
Cdd:TIGR03262  79 YALTRSRI-PGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLG-----GFSI---YGFWGIVIGEVFYTFPHAL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  190 LTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFMEPRILGGRVGVtMGTVIEDQFTQ 269
Cdd:TIGR03262 150 MILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNV-LATDIYKQVIG 228

                         250       260       270
                  ....*....|....*....|....*....|.
gi 653801353  270 AFNWPLGASLSFTLLAVVLAIFATFSGVLRR 300
Cdd:TIGR03262 229 QQNFPMGAVVGVLLLLPALLAFGIDRAIQRR 259
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 88-290 2.39e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.53  E-value: 2.39e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  88 ITSLLIGFWTTLFCAVLGFLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIAPdagsi 167
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 168 gflytryaVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSFME 247
Cdd:cd06261   76 --------ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 653801353 248 PRILGGRVGVTMGTVIEDQFTQAFNWPLGASLSFTLLAVVLAI 290
Cdd:cd06261  148 VSFLGGGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 36-238 3.35e-11

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 62.31  E-value: 3.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  36 TYGWLTLA-VFLPLLTMFVFSFmSATPMGKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVLGFLAAVALVR 114
Cdd:PRK09500   8 GFMTLVYAyLYIPIIILIVNSF-NSSRFGINWKGFTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYR 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 115 STFgKTREMLlilillpfwtNGLVRVfswTMVLRENGFLDSLLHMIAPDAGSIGFLytryAVVVGLVHGYLPYMILTCYI 194
Cdd:PRK09500  87 YRF-RGKKFV----------SGMLFV---VMMSPDIVMAISLLVLFMLLGIQLGFW----SLLFAHITFCLPFVVVTVYS 148

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 653801353 195 ALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIF 238
Cdd:PRK09500 149 RLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSF 192
cysT CHL00187
sulfate transport protein; Provisional
 76-245 1.03e-09

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 57.72  E-value: 1.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  76 AFIDQPYLVGIGITSLLIGFWTTLFCAVLGFLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDS 155
Cdd:CHL00187  46 QKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNF-PGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGH 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 156 LLHMIapdagSIGFLYTRYAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAV 235
Cdd:CHL00187 125 LLSHL-----GIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLA 199

                        170
                 ....*....|
gi 653801353 236 LIFIPVIGSF 245
Cdd:CHL00187 200 LTFSRAIGEY 209
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
26-245 9.84e-09

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 55.15  E-value: 9.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  26 WVSTTALLLPTYGwLTLAVFLPLLTMFVFSFMSATPMGKAPIifTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVLG 105
Cdd:PRK10971   2 LAVSSKRVLPGFT-LSLGTSLLFVCLILLLPLSALVMQLSQM--SWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFG 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 106 FLAAVALVRSTFgKTREMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIapdagSIGFLYTRYAVVVGLVHGYL 185
Cdd:PRK10971  79 LLMAWILTRYRF-PGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAKF-----DIKVTYTWLGIAVAMAFTSI 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 186 PYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSF 245
Cdd:PRK10971 153 PFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF 212
modB PRK09421
molybdate ABC transporter permease subunit;
90-245 1.18e-07

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 51.46  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  90 SLLIGFWTTLFCAVLGFLAAVALVRSTF-GKTreMLLILILLPFWTNGLVRVFSWTMVLRENGFLDSLLHMIApdAGSIG 168
Cdd:PRK09421  14 SLKVSSVAVLFSLPFGILVAWLLARCRFpGKS--LLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYEWF--GISFA 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653801353 169 FLYTRYAVVVGLVHgyLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSF 245
Cdd:PRK09421  90 FSWRGAALAAAVMA--FPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 159-294 4.82e-07

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 49.22  E-value: 4.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  159 MIAPDAGSIGFLYTRYAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIF 238
Cdd:pfam00528  38 LLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAF 117

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 653801353  239 IPVIGSFMEPRILGGRVGVTMgTVIEDQFTQAFNWPLGASLSFTLLAVVLAIFATF 294
Cdd:pfam00528 118 GGALGGAVLLEFLGSWPGLGL-LLIEAILGYDYPEIQGPVLAAALILLLLNLLVDI 172
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
174-256 2.89e-04

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 41.26  E-value: 2.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 174 YAVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIFIPVIGSfmepRILGG 253
Cdd:PRK10782  90 QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY----SAMGG 165


                 ...
gi 653801353 254 RVG 256
Cdd:PRK10782 166 AVG 168
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 44-238 3.58e-04

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 41.38  E-value: 3.58e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353  44 VFLPLLTMFVFSFMSaTPMGKAPIIFTLKQYRAFIDQPYLVGIGITSLLIGFWTTLFCAVLGFLAAVALVRstFGKTREm 123
Cdd:PRK10592  23 LYAPMLMLVIYSFNS-SKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVR--FGRFRG- 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653801353 124 llilillpfwTNGLVRVFSWTMVLRENGFLDSLLHMIAPDAGSIGFLYTRYAVVVGLVHGYLPYMILTCYIA--LMAIDD 201
Cdd:PRK10592  99 ----------SNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVISsrLRELDR 168

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 653801353 202 AIIEAASSLGARWWTILFKILMPLAAPGLISGAVLIF 238
Cdd:PRK10592 169 SIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAF 205
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 175-233 9.67e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 39.65  E-value: 9.67e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 653801353 175 AVVVGLVHGYLPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISG 233
Cdd:COG1174   84 PAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 185-233 1.08e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.75  E-value: 1.08e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 653801353 185 LPYMILTCYIALMAIDDAIIEAASSLGARWWTILFKILMPLAAPGLISG 233
Cdd:COG0600  137 FFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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