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Conserved domains on  [gi|647649398|ref|WP_025920882|]
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single-stranded DNA-binding protein [Staphylococcus aureus]

Protein Classification

single-stranded DNA-binding protein( domain architecture ID 11427956)

single-stranded DNA (ssDNA)-binding protein plays a key role in DNA replication, recombination, and repair

CATH:  2.40.50.140
Gene Ontology:  GO:0003697|GO:0006260
PubMed:  12598368|8458342|27838363
SCOP:  4000346

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-111 3.90e-40

Single-stranded DNA-binding protein [Replication, recombination and repair];


:

Pssm-ID: 440394  Cd Length: 116  Bit Score: 130.73  E-value: 3.90e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNkQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:COG0629    1 MNKVTLVGRLGKDPELRyTPSGTaVANFRLAVNRRYKD-QDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 647649398  77 TGSYENNQGQKVFTTDIAVNNITFVERKNNGRSNN 111
Cdd:COG0629   80 TRSWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-111 3.90e-40

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 130.73  E-value: 3.90e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNkQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:COG0629    1 MNKVTLVGRLGKDPELRyTPSGTaVANFRLAVNRRYKD-QDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 647649398  77 TGSYENNQGQKVFTTDIAVNNITFVERKNNGRSNN 111
Cdd:COG0629   80 TRSWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 2-147 1.73e-37

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 125.61  E-value: 1.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398    2 NTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNKQ-TNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:TIGR00621   5 NKVILVGRLTRDPELRYTPSGnaVANFTLATNRRWKDQDgEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   79 SYENNQGQKVFTTDIAVNNITFVERK-----------NNGRSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF 147
Cdd:TIGR00621  85 KWEDQNGQKRSKTEIIADNVQLLDLLgaraqggefsgGGGSGNRPQGGQEQSATGKDPAQSAPQSGSADPIDGDDDEIPF 164
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 4-100 1.24e-32

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 111.16  E-value: 1.24e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   4 VNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSYE 81
Cdd:cd04496    1 VILIGRLGKDPELRyTPSGTpVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                         90
                 ....*....|....*....
gi 647649398  82 NNQGQKVFTTDIAVNNITF 100
Cdd:cd04496   81 DKDGQKRYGTEVVADRIEF 99
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-101 3.26e-32

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 110.02  E-value: 3.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398    1 MNTVNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:pfam00436   1 MNKVILVGRLTRDPELRyTPNGNaVANFTLATNRRFKDRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 647649398   79 SYENNQGQKVFTTDIAVNNITFV 101
Cdd:pfam00436  81 KYEDQEGQKRYVTEIVADEVQFL 103
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-147 6.45e-31

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 108.82  E-value: 6.45e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK--GQNNNVVNFAIAVQRPFKNkQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK07275   2 INNVVLVGRMTRDAELRytPSNVAVATFTLAVNRTFKS-QNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  79 SYENNQGQKVFTTDIAVNNITFVERKN----------NGRSNNQQQHNSYNAPQ----NRQQSNNPFANANgPIEISDDD 144
Cdd:PRK07275  81 NYENQQGQRVYVTEVVADNFQMLESRAtreggsggsyNGGFNNAPSANSYSAPAqqtpNFGRDESPFGNSN-PMDISDDD 159


                 ...
gi 647649398 145 LPF 147
Cdd:PRK07275 160 LPF 162
 
Name Accession Description Interval E-value
Ssb COG0629
Single-stranded DNA-binding protein [Replication, recombination and repair];
1-111 3.90e-40

Single-stranded DNA-binding protein [Replication, recombination and repair];


Pssm-ID: 440394  Cd Length: 116  Bit Score: 130.73  E-value: 3.90e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNkQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:COG0629    1 MNKVTLVGRLGKDPELRyTPSGTaVANFRLAVNRRYKD-QDGEWkdETDWHRVVAWGKLAENAAEYLKKGDKVYVEGRLR 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 647649398  77 TGSYENNQGQKVFTTDIAVNNITFVERKNNGRSNN 111
Cdd:COG0629   80 TRSWEDKDGQKRYTTEVVADEIQFLGSRPSGGGGG 114
ssb TIGR00621
single stranded DNA-binding protein (ssb); All proteins in this family for which functions are ...
 2-147 1.73e-37

single stranded DNA-binding protein (ssb); All proteins in this family for which functions are known are single-stranded DNA binding proteins that function in many processes including transcription, repair, replication and recombination. Members encoded between genes for ribosomal proteins S6 and S18 should be annotated as primosomal protein N (PriB). Forms in gamma-protoeobacteria are much shorter and poorly recognized by this model. Additional members of this family include phage proteins. Eukaryotic members are organellar proteins. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273179 [Multi-domain]  Cd Length: 164  Bit Score: 125.61  E-value: 1.73e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398    2 NTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNKQ-TNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:TIGR00621   5 NKVILVGRLTRDPELRYTPSGnaVANFTLATNRRWKDQDgEWKEETEWHDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTR 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   79 SYENNQGQKVFTTDIAVNNITFVERK-----------NNGRSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDLPF 147
Cdd:TIGR00621  85 KWEDQNGQKRSKTEIIADNVQLLDLLgaraqggefsgGGGSGNRPQGGQEQSATGKDPAQSAPQSGSADPIDGDDDEIPF 164
SSB_OBF cd04496
SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs ...
 4-100 1.24e-32

SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.


Pssm-ID: 239942  Cd Length: 100  Bit Score: 111.16  E-value: 1.24e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   4 VNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTGSYE 81
Cdd:cd04496    1 VILIGRLGKDPELRyTPSGTpVARFSLAVNRRRKDRDEEEEETDWIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWE 80

                         90
                 ....*....|....*....
gi 647649398  82 NNQGQKVFTTDIAVNNITF 100
Cdd:cd04496   81 DKDGQKRYGTEVVADRIEF 99
SSB pfam00436
Single-strand binding protein family; This family includes single stranded binding proteins ...
 1-101 3.26e-32

Single-strand binding protein family; This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.


Pssm-ID: 425680  Cd Length: 103  Bit Score: 110.02  E-value: 3.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398    1 MNTVNLIGNLVADPELK-GQNNN-VVNFAIAVQRPFKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:pfam00436   1 MNKVILVGRLTRDPELRyTPNGNaVANFTLATNRRFKDRGEGDEETDFHRVVVFGKLAEVAAQYLKKGSLVYVEGRLQTR 80

                          90       100
                  ....*....|....*....|...
gi 647649398   79 SYENNQGQKVFTTDIAVNNITFV 101
Cdd:pfam00436  81 KYEDQEGQKRYVTEIVADEVQFL 103
PRK07275 PRK07275
single-stranded DNA-binding protein; Provisional
 1-147 6.45e-31

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180915 [Multi-domain]  Cd Length: 162  Bit Score: 108.82  E-value: 6.45e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK--GQNNNVVNFAIAVQRPFKNkQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK07275   2 INNVVLVGRMTRDAELRytPSNVAVATFTLAVNRTFKS-QNGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  79 SYENNQGQKVFTTDIAVNNITFVERKN----------NGRSNNQQQHNSYNAPQ----NRQQSNNPFANANgPIEISDDD 144
Cdd:PRK07275  81 NYENQQGQRVYVTEVVADNFQMLESRAtreggsggsyNGGFNNAPSANSYSAPAqqtpNFGRDESPFGNSN-PMDISDDD 159


                 ...
gi 647649398 145 LPF 147
Cdd:PRK07275 160 LPF 162
PRK06752 PRK06752
single-stranded DNA-binding protein; Validated
 1-109 2.34e-25

single-stranded DNA-binding protein; Validated


Pssm-ID: 168660  Cd Length: 112  Bit Score: 93.18  E-value: 2.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNNV--VNFAIAVQRPFKNkQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK06752   2 MNRVVLIGRLTKEPELYYTKQGVayARVCVAVNRGFRN-SLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTR 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 647649398  79 SYENNQGQKVFTTDIAVNNITFVERKNNGRS 109
Cdd:PRK06752  81 NYEDDQGKRIYITEVVIESITFLERRREGAS 111
PRK06751 PRK06751
single-stranded DNA-binding protein; Provisional
 1-147 1.42e-23

single-stranded DNA-binding protein; Provisional


Pssm-ID: 168659 [Multi-domain]  Cd Length: 173  Bit Score: 90.24  E-value: 1.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNNVV--NFAIAVQRPFKNKQtNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK06751   2 MNRVILVGRLTKDPDLRYTPNGVAvaTFTLAVNRAFANQQ-GEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  79 SYENNQGQKVFTTDIAVNNITFVERKNNG----RSNNQQQH-------------NSYNAPQNRQQSN-------NPFANA 134
Cdd:PRK06751  81 NYEGQDGKRVYVTEVLAESVQFLEPRNGGgeqrGSFNQQPSgagfgnqssnpfgQSSNSGNQGNQGNsgftkndDPFSNV 160

                        170
                 ....*....|...
gi 647649398 135 NGPIEISDDDLPF 147
Cdd:PRK06751 161 GQPIDISDDDLPF 173
PRK09010 PRK09010
single-stranded DNA-binding protein; Provisional
 1-147 2.30e-19

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236362 [Multi-domain]  Cd Length: 177  Bit Score: 79.51  E-value: 2.30e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNKQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:PRK09010   6 VNKVILVGNLGQDPEVRYMPNGgaVANITLATSESWRDKQTGEMkeQTEWHRVVLFGKLAEVAGEYLRKGSQVYIEGQLR 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  77 TGSYENNQGQKVFTTDIAVNNITFVER--------KNNGRSNNQQQHNSYNAPQNRQQSNN-------------PFANAN 135
Cdd:PRK09010  86 TRKWTDQSGQDRYTTEVVVNVGGTMQMlggrqgggAPAGGNIGGQQQGGWGQPQQPQGGNQfsggaqsrpqqsaPAAPSN 165

                        170
                 ....*....|..
gi 647649398 136 GPIEISDDDLPF 147
Cdd:PRK09010 166 EPPMDFDDDIPF 177
PRK07274 PRK07274
single-stranded DNA-binding protein; Provisional
 1-106 1.68e-18

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180914  Cd Length: 131  Bit Score: 75.95  E-value: 1.68e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNkQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK07274   2 YNKVILIGRLTATPELVKTANDksVARVTLAVNRRFKN-QNGEREADFINVVLWGKLAETLASYASKGSLISIDGELRTR 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 647649398  79 SYENNqGQKVFTTDIAVNNITFVE-------RKNN 106
Cdd:PRK07274  81 KYEKD-GQTHYVTEVLCQSFQLLEsraqramRENN 114
PRK06642 PRK06642
single-stranded DNA-binding protein; Provisional
 1-147 2.30e-17

single-stranded DNA-binding protein; Provisional


Pssm-ID: 135984  Cd Length: 152  Bit Score: 73.60  E-value: 2.30e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK--GQNNNVVNFAIAVQRPFKNKQTNEYE--TDFIRCVAFGK-TAEIIANNFNKGNKIGVTGSI 75
Cdd:PRK06642   5 LNKVILIGNVGRDPEIRttGEGKKIINLSLATTETWKDRITSERKerTEWHRVVIFSEgLVSVVERYVTKGSKLYIEGSL 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 647649398  76 QTGSYENNQGQKVFTTDIAVNN----ITFVERKNNGRSNNQQQHNSYNAPQNRQQSnnpFANANgpieiSDDDLPF 147
Cdd:PRK06642  85 QTRKWNDNSGQEKYTTEVVLQNfnsqLILLDSKNSNNHNQDSGHSEYKHPETKNHS---FDHSD-----LDDEIPF 152
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 1-147 2.52e-16

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 71.50  E-value: 2.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK--GQNNNVVNFAIAVQRPFKNKQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:PRK05733   5 VNKVILVGTCGQDPEVRylPNGNAVTNLSLATSEQWTDKQSGQKveRTEWHRVSLFGKVAEIAGEYLRKGSQVYIEGKLQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  77 TGSYENNqGQKVFTTDIAVnNITFVERKNNGRSNNQQQH----NSYNAPQNRQQSNNPFANANGP--------------- 137
Cdd:PRK05733  85 TREWEKD-GIKRYTTEIVV-DMQGTMQLLGGRPQGDDQGgqggGNYNQSAPRQQAQRPQQAAQQQsrpapqqpapqpaad 162

                        170
                 ....*....|
gi 647649398 138 IEISDDDLPF 147
Cdd:PRK05733 163 FDSFDDDIPF 172
PRK08763 PRK08763
single-stranded DNA-binding protein; Provisional
 1-147 3.53e-15

single-stranded DNA-binding protein; Provisional


Pssm-ID: 181549 [Multi-domain]  Cd Length: 164  Bit Score: 68.04  E-value: 3.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK----GQNNNVVNFAIAVQRpfKNKQTNEYE-TDFIRCVAFGKTAEIIANNFNKGNKIGVTGSI 75
Cdd:PRK08763   5 INKVILVGNLGNDPDIKytqsGMTITRISLATTSVR--KDREGNTQErTEWHRVKFFGKLGEIAGEYLRKGSQCYIEGSI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  76 QTGSYENNQGQKVFTTDIAVNNITFVERKNNG-----------RSNNQQQHNSYNApQNRQQSNNPFANANGPIEISDDD 144
Cdd:PRK08763  83 RYDKFTGQDGQERYVTEIVADEMQMLGGRGEGgggggggirpqRQPAPRQNNGQDY-APRRQQPAPQQSAPPMDDFADDD 161


                 ...
gi 647649398 145 LPF 147
Cdd:PRK08763 162 IPF 164
PRK13732 PRK13732
single-stranded DNA-binding protein; Provisional
 1-147 3.48e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 184284 [Multi-domain]  Cd Length: 175  Bit Score: 65.91  E-value: 3.48e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNKQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:PRK13732   6 INKVILVGRLGKDPEVRYIPNGgaVANLQVATSESWRDKQTGEMreQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLR 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  77 TGSYENNqGQKVFTTDIAVN---NITFVERKNNGRSNNQQQHNSYNAPQNRQQSNNPFANANG-------------PIEI 140
Cdd:PRK13732  86 TRSWEDN-GITRYVTEILVKttgTMQMLGRAPQQNAQPQPGPQQNGQPQSADATKKGGAKTKGrgrkaaqpepqpqPPEG 164

                        170
                 ....*....|.
gi 647649398 141 SD----DDLPF 147
Cdd:PRK13732 165 EDygfsDDIPF 175
PRK06958 PRK06958
single-stranded DNA-binding protein; Provisional
 2-93 7.12e-14

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180777 [Multi-domain]  Cd Length: 182  Bit Score: 65.20  E-value: 7.12e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   2 NTVNLIGNLVADPELK--GQNNNVVNFAIAVQRPFKNKQTNEYE--TDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQT 77
Cdd:PRK06958   5 NKVILVGNLGADPEVRylPSGDAVANIRLATTDRYKDKASGEFKeaTEWHRVAFFGRLAEIVGEYLKKGSSVYIEGRIRT 84

                         90
                 ....*....|....*.
gi 647649398  78 GSYENNQGQKVFTTDI 93
Cdd:PRK06958  85 RKWQGQDGQDRYSTEI 100
PRK07772 PRK07772
single-stranded DNA-binding protein; Provisional
 3-136 1.10e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236092 [Multi-domain]  Cd Length: 186  Bit Score: 64.67  E-value: 1.10e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   3 TVNLIGNLVADPELKGQNNN--VVNFAIA-VQRPFkNKQTNEY---ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:PRK07772   6 TITVVGNLTADPELRFTPSGaaVANFTVAsTPRTF-DRQTNEWkdgEALFLRCSIWRQAAENVAESLTKGMRVIVTGRLK 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 647649398  77 TGSYENNQGQKVFTTDIAVNNI-------TFVERKNNGRSNNQQQHNSYNAPQNRQQSNNPFANANG 136
Cdd:PRK07772  85 QRSYETREGEKRTVVELEVDEIgpslryaTAKVTRASRGGGGGGGGGGFGGGGGGSGGGGGGGGGGG 151
PRK06863 PRK06863
single-stranded DNA-binding protein; Provisional
 1-147 5.50e-13

single-stranded DNA-binding protein; Provisional


Pssm-ID: 136097 [Multi-domain]  Cd Length: 168  Bit Score: 62.68  E-value: 5.50e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNKQTNEYE--TDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQ 76
Cdd:PRK06863   4 INKVIIVGHLGNDPEIRTMPNGeaVANISVATSESWTDKNTGERRevTEWHRIVFYRRQAEVAGEYLRKGSQVYVEGRLK 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  77 TGSYENNQGQKVFTTDIAVNNITFVERKNNGRS-----------NNQQQHNSYNAPQNRQQSNNPFAN---ANGPIEISD 142
Cdd:PRK06863  84 TRKWQDQNGQDRYTTEIQGDVLQMLGGRNQRNAggygnsgpapqQSYQAGQTNNGNSQQASRPAPQQAapqAEPPMDGFD 163


                 ....*
gi 647649398 143 DDLPF 147
Cdd:PRK06863 164 DDIPF 168
PRK07459 PRK07459
single-stranded DNA-binding protein; Provisional
 1-119 2.06e-11

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180986  Cd Length: 121  Bit Score: 57.39  E-value: 2.06e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKG-QNNNVV-NFAIAVQRPFKNKqtneyETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK07459   3 LNSVTLVGRAGRDPEVRYfESGSVVcNLTLAVNRRSRDD-----EPDWFNLEIWGKTAQVAADYVKKGSLIGITGSLKFD 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 647649398  79 SYEN-NQGQKVFTTDIAVNNITFVERKNNGRSNNQQQHNSYN 119
Cdd:PRK07459  78 RWTDrNTGEDRSKPVIRVDRLELLGSKRDSEGNANPSNSSEI 119
PRK08486 PRK08486
single-stranded DNA-binding protein; Provisional
 2-147 1.34e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 236275 [Multi-domain]  Cd Length: 182  Bit Score: 56.39  E-value: 1.34e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   2 NTVNLIGNLVADPELK--GQNNNVVNFAIAVQRPFKnKQTNEY--ETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQT 77
Cdd:PRK08486   3 NKVILVGNLTRDVELRylPSGSAIATIGLATSRRFK-KQDGEKgeEVCFIDIRLFGRTAEIANQYLSKGSKVLIEGRLTF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  78 GSYENNQGQKVFTTDIAVNNITFVERKNNG--------RSNNQQQHNSYNAPQNRQQ---------------SNNPFANA 134
Cdd:PRK08486  82 ESWMDQNGQKRSKHTITAESMQMLDSKSDNpqanamqdNSFHENFNNNYPGNYNNPSqdpymnqaqsynqnaYAKENQQA 161

                        170       180
                 ....*....|....*....|.
gi 647649398 135 NGP--------IEISDDDLPF 147
Cdd:PRK08486 162 QPPkyensvpeIDIDEEEIPF 182
PRK06293 PRK06293
single-stranded DNA-binding protein; Provisional
 1-147 1.69e-10

single-stranded DNA-binding protein; Provisional


Pssm-ID: 180517 [Multi-domain]  Cd Length: 161  Bit Score: 55.68  E-value: 1.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELK--GQNNNVVNFAIAVqrpfKNKQTNEYETDFIRCVAFGKTAEIIANNFNKGNKIGVTGSIQTG 78
Cdd:PRK06293   1 MMFGYIVGRLGADPEERmtSKGKRVVVLRLGV----KSRVGSKDETVWCRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPE 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  79 SYENNQGQKVFTTDIAVNNITFV-------ERKNNGRSNNQQQ----HNSYNAPQNRQQS-----NNPFANANGPIEISD 142
Cdd:PRK06293  77 SYVDKDGSPQSSLVVSVDTIKFSpfgrnegSRQPSAGEDEGQQrgydNVSIGFEGESLDTesaldKDMYAGYGQDQQYAS 156


                 ....*
gi 647649398 143 DDLPF 147
Cdd:PRK06293 157 EDVPF 161
PRK06341 PRK06341
single-stranded DNA-binding protein; Provisional
 1-147 2.55e-08

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235782 [Multi-domain]  Cd Length: 166  Bit Score: 50.19  E-value: 2.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398   1 MNTVNLIGNLVADPELKGQNNN--VVNFAIAVQRPFKNKQTNEY--ETDFIRCVAFGK-TAEIIANNFNKGNKIGVTGSI 75
Cdd:PRK06341   5 VNKVILIGNLGADPEIRRTQDGrpIANLRIATSETWRDRNSGERkeKTEWHRVVIFNEgLCKVAEQYLKKGAKVYIEGQL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 647649398  76 QTGSYENNQGQKVFTTDIAVNN----ITFVERK------NNGRSNNQQQHNSYNAPQNRQQSNNPFANANGPIEISDDDL 145
Cdd:PRK06341  85 QTRKWTDQSGVERYSTEVVLQGfnstLTMLDGRgeggggGGGGDDGGGGDFGSSGPSRGGPRPASSGGGGNFSRDMDDDI 164


                 ..
gi 647649398 146 PF 147
Cdd:PRK06341 165 PF 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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