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Conserved domains on  [gi|644553827|ref|WP_025331566|]
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ABC transporter permease [Snodgrassella alvi]

Protein Classification

ABC transporter permease( domain architecture ID 10790725)

ABC transporter permease is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

Gene Ontology:  GO:0043190|GO:0140359|GO:0042626|GO:0016020|GO:0006826
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 2-313 6.56e-135

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443656  Cd Length: 318  Bit Score: 385.24  E-value: 6.56e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   2 YRILISVFIVLCIVSLLVGTDPVSWTGLLSGSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGG 81
Cdd:COG4606    4 LRLLILLLLVLSILSLFIGVSDVSLSDLLSLDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  82 LDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNNLLQN 161
Cdd:COG4606   84 MESAKLGILVALLLFPGASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 162 VQGWLLGDFSRVVQGHYELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIP 241
Cdd:COG4606  164 LSSWLQGDFSGVLRGRYELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSIP 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644553827 242 FIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILRGLR 313
Cdd:COG4606  244 FLGLIVPNIVSLYMGDNLRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRR 315
 
Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 2-313 6.56e-135

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443656  Cd Length: 318  Bit Score: 385.24  E-value: 6.56e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   2 YRILISVFIVLCIVSLLVGTDPVSWTGLLSGSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGG 81
Cdd:COG4606    4 LRLLILLLLVLSILSLFIGVSDVSLSDLLSLDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  82 LDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNNLLQN 161
Cdd:COG4606   84 MESAKLGILVALLLFPGASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 162 VQGWLLGDFSRVVQGHYELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIP 241
Cdd:COG4606  164 LSSWLQGDFSGVLRGRYELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSIP 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644553827 242 FIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILRGLR 313
Cdd:COG4606  244 FLGLIVPNIVSLYMGDNLRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRR 315
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 9-310 1.44e-48

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 164.62  E-value: 1.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827    9 FIVLCIVSLLVGTDPVSWTGLLS-----GSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLD 83
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSallggDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   84 AAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNN--LLQN 161
Cdd:pfam01032  82 GAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpeALQS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  162 VQGWLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSI 240
Cdd:pfam01032 162 ILFWLMGSLSGANWSDvLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPI 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  241 PFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:pfam01032 242 GFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 48-308 1.26e-30

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 116.12  E-value: 1.26e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  48 LIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIR 127
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 128 YQQIVLIpVIGLMYGCVLSAAAEFYAY-KNNLLQNVQGWLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQ 205
Cdd:cd06550   81 LSPSKLI-LIGIVLSAFFSAGVILISLlSDDSLQDLNIWLFGSILGVTWEDlLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 206 QMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLI 285
Cdd:cd06550  160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

                        250       260
                 ....*....|....*....|...
gi 644553827 286 yPFEIPIGLTAGAVGGIVFLLLI 308
Cdd:cd06550  240 -PSELPVGPVTALLGAPYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
4-311 2.13e-25

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 106.08  E-value: 2.13e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   4 ILISVFIVLCIVSLLVGTDPVSWTGLlsgSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLD 83
Cdd:PRK10577 360 ALGLLLLLALVVALSFGRDAHGWNWL---SGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISS 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  84 AAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIpVIGLMYGCVLSAAAEFYAYKNNL-LQNV 162
Cdd:PRK10577 437 GAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAPERLL-LTGIALSALFTALIQLLLASGDPrAAQL 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 163 QGWLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIP 241
Cdd:PRK10577 516 LTWLSGSTYGVTWAQaLPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLS 595

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 242 FIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILRG 311
Cdd:PRK10577 596 FVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRS 665
 
Name Accession Description Interval E-value
CeuB COG4606
ABC-type enterochelin transport system, permease component [Inorganic ion transport and ...
 2-313 6.56e-135

ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443656  Cd Length: 318  Bit Score: 385.24  E-value: 6.56e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   2 YRILISVFIVLCIVSLLVGTDPVSWTGLLSGSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGG 81
Cdd:COG4606    4 LRLLILLLLVLSILSLFIGVSDVSLSDLLSLDPEALQILLISRLPRTLAILLAGASLSVAGLIMQQLTRNRFVEPTTAGT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  82 LDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNNLLQN 161
Cdd:COG4606   84 MESAKLGILVALLLFPGASLLGKMLVAFVFALAGTLLFLAILRRIPFKDALLVPLVGLMLGGVISAITTFFAYRFDLLQS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 162 VQGWLLGDFSRVVQGHYELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIP 241
Cdd:COG4606  164 LSSWLQGDFSGVLRGRYELLWLSAPLAVLAYLYADRFTIAGMGEDFATNLGLNYRRVVNLGLVIVALITAVVVVTVGSIP 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 644553827 242 FIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILRGLR 313
Cdd:COG4606  244 FLGLIVPNIVSLYMGDNLRRTLPWVALLGAGFVLACDILGRLIIYPYEIPIGTVVGVVGSAIFLYLLLRRRR 315
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 9-310 1.44e-48

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 164.62  E-value: 1.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827    9 FIVLCIVSLLVGTDPVSWTGLLS-----GSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLD 83
Cdd:pfam01032   2 LLLLILLSLFIGAVKISPSDVFSallggDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   84 AAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNN--LLQN 161
Cdd:pfam01032  82 GAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNpeALQS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  162 VQGWLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSI 240
Cdd:pfam01032 162 ILFWLMGSLSGANWSDvLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGPI 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  241 PFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:pfam01032 242 GFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 16-311 8.59e-38

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 135.97  E-value: 8.59e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  16 SLLVGTDPVSWTGLLS------GSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLDAAKLGI 89
Cdd:COG0609    1 SLSLGAVPISLSDVLRallgpdGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  90 LVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEF--YAYKNNLLQNVQGWLL 167
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGGGLSPLRLVLAGVAVSALFSALTSLllLLADPEQLRSIVFWLM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 168 GDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIPFIGLV 246
Cdd:COG0609  161 GSLAGASWDDvLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644553827 247 IPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILRG 311
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRR 305
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 48-308 1.26e-30

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 116.12  E-value: 1.26e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  48 LIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIR 127
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 128 YQQIVLIpVIGLMYGCVLSAAAEFYAY-KNNLLQNVQGWLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQ 205
Cdd:cd06550   81 LSPSKLI-LIGIVLSAFFSAGVILISLlSDDSLQDLNIWLFGSILGVTWEDlLILLIILLLVLLLLLLLSRKLNLLTFDE 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 206 QMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLI 285
Cdd:cd06550  160 DLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL 239

                        250       260
                 ....*....|....*....|...
gi 644553827 286 yPFEIPIGLTAGAVGGIVFLLLI 308
Cdd:cd06550  240 -PSELPVGPVTALLGAPYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
4-311 2.13e-25

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 106.08  E-value: 2.13e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   4 ILISVFIVLCIVSLLVGTDPVSWTGLlsgSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLD 83
Cdd:PRK10577 360 ALGLLLLLALVVALSFGRDAHGWNWL---SGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISS 436

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  84 AAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIpVIGLMYGCVLSAAAEFYAYKNNL-LQNV 162
Cdd:PRK10577 437 GAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAPERLL-LTGIALSALFTALIQLLLASGDPrAAQL 515

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 163 QGWLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIP 241
Cdd:PRK10577 516 LTWLSGSTYGVTWAQaLPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATATVGPLS 595

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 242 FIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILRG 311
Cdd:PRK10577 596 FVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRS 665
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
2-310 5.71e-24

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 99.35  E-value: 5.71e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   2 YRILISVFIVLCIVSLLVGTDPVSWTGLLSG---SDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPET 78
Cdd:PRK09777   6 VIFITLALAGCALLSLRMGVIPLPWRALLTDwqaGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDI 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  79 AGGLDAAKLGILVSLVLLPSAGVLSKMLAALLFCfVAGLIYIWIIAriRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNNL 158
Cdd:PRK09777  86 LGVNHAASLASVGALLLFPSLPVMWLPLLAFIGG-MAGLILLKMLA--GTHQPMKLALTGVALSALWASLTDYLMLSRPQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 159 -LQNVQGWLLGD-FSRVVQGHYELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVIT 236
Cdd:PRK09777 163 dINNALLWLTGSlWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAA 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644553827 237 VGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:PRK09777 243 CGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVR 316
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
3-313 3.64e-19

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 87.97  E-value: 3.64e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   3 RILISVFIVLCIVSLLVGTDPVS---WTGLLSGSDADWLT---VKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEP 76
Cdd:PRK10577  15 LLLALLLLLALALTLTQLSAALPlsqWLQALWGPDADDLEqllLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPLASP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  77 ETAGGLDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLI---PVIGLMYGCVLSAAAEFYA 153
Cdd:PRK10577  95 TTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLLAAALVFALAGGKRLSPLRLVlagMVVSLYLGALTTLLLLFNE 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 154 -YKNNLLQNVQGWLLG-DFSRVVQghyeLLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVA 231
Cdd:PRK10577 175 qYLQGLFLWGAGSLAQnDWSGVQR----LLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSA 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 232 TTVITVGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLL--IYPFEIPIGLTAGAVGGIVFLLLIL 309
Cdd:PRK10577 251 AVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLagVGGELLPTGAVTALIGAPLLLWLLP 330


                 ....
gi 644553827 310 RGLR 313
Cdd:PRK10577 331 RLRS 334
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 4-310 1.16e-18

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 84.62  E-value: 1.16e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   4 ILISVFIVLCIVSLLVGTD---PVSWTgllsgSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAG 80
Cdd:PRK03784  20 GLSVLLLLALLLSLCAGEQwisPGDWL-----SPRGELFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLG 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  81 GLDAAKLGILVSLVLLPSA-GVLSKMLAALLFCFVAGLIYIwIIARIRYQQIVLIPVIGLMYGCVLSAAAE--FYAYKNN 157
Cdd:PRK03784  95 VSNGAGVALVAAVLLGQGLlPPWALSLCAIAGALLITLILL-RFARRHRLSTSRLLLAGVALGIICSALMTwaVYFSTSL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 158 LLQNVQGWLLGDFSRVVQGHYELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVS-----YKTTVAIGLMlvsvtVAT 232
Cdd:PRK03784 174 DLRQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCCQGRPLNMLALGEISARQLGLPlwfwrNLLVLATGWL-----VGV 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644553827 233 TVITVGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:PRK03784 249 SVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLR 326
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
25-310 4.93e-14

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 71.26  E-value: 4.93e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  25 SWTGLLSGSDADW--LTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLDAAKLGILVSLVLLPSagVL 102
Cdd:PRK11228  30 ALNALLPGHTPTLpeALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPT--PF 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 103 SKMLAALLFCFVAGLIYIWIIA-----RIRYQQIVLIpviglMYGCVLSA-----------AAEFYAYknnllqNVQGWL 166
Cdd:PRK11228 108 AGYSLAFIAACGGGLSWLLVMTagggwRHTHDRNRLI-----LAGIALSAlcmaltritllLAEDHAY------GIFYWL 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 167 LGDFSRVVQGHYELLY-VLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIPFIGL 245
Cdd:PRK11228 177 AGGVSHARWQEVWQLLpFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGL 256

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644553827 246 VIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:PRK11228 257 LVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARR 321
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
5-310 9.78e-12

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 64.73  E-value: 9.78e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   5 LISVFIVLCIVSLLVGTDP----VSWTGLL-SGSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETA 79
Cdd:PRK10441  16 LLLLLIIATALSLLIGAKSlpasVVLEALSgTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLL 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  80 GGLDAAKLGILVSLVLLPSAGVLSKMLAALLFCFVAGLIYIWIIARIRYQ-QIVLIPVIGLMYGCVLSAAAEFYAYKNNL 158
Cdd:PRK10441  96 GVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQlSPVRLTLAGVALAAVLEGLTSGIALLNPD 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 159 LQN-VQGWLLGdfSRVVQGHYELLYVLVPVII---LSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTV 234
Cdd:PRK10441 176 VYDqLRFWQAG--SLDIRNLHTLKVVLIPVLIagaTALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSAT 253

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644553827 235 ITVGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIyPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:PRK10441 254 AVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLV-PGELRVSVVSAFIGAPVLIFLVRR 328
btuC PRK09535
cobalamin ABC transporter permease BtuC;
40-310 4.04e-11

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 63.23  E-value: 4.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  40 VKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPETAGGLDAAKLGIlVSLVLLPSAGVLSKMLAALLFCFVAGLIY 119
Cdd:PRK09535  91 VLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGA-VAAIVLPLAVPFGLQAAAFAGALVAAFGV 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 120 IWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFY-AYKNNLLQNVQGWLLGDFSRVVQGHYEL-LYVLVPVIILSYVFANR 197
Cdd:PRK09535 170 YAIATENGRTPVATLLLAGVAVQTFLGAVISYLlLHSGESLRRAVYWLMGHLHGSTWSDVEVaLPVVVVGFVVLLAYARD 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 198 FTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVITVGSIPFIGLVIPNLVAIKYGEHLARTLPVVALGGACLLLGC 277
Cdd:PRK09535 250 LNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASFLVAT 329

                        250       260       270
                 ....*....|....*....|....*....|...
gi 644553827 278 DITGRLliYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:PRK09535 330 DTVARS--GPAEVPVGIVTAALGAPFFLYLLRT 360
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
4-310 4.90e-09

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 56.64  E-value: 4.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827   4 ILISVFIVLCIVSLLVGTDPVSWTGLL-----SGSDADWLTVKASRFPRLIAIVLTGMGLSIGGVILQHIVRNKFVEPET 78
Cdd:PRK10440  14 LLLAACVAAGLWGLRSGAVTLETSQVFaalmgDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDV 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827  79 AGGLDAAKLGILVSLVLLpsAGVLSKMLAALLFCFVAGLIYIWIIARIRYQQIVLIPVIGLMYGCVLSAAAEFYAYKNNL 158
Cdd:PRK10440  94 MGFNTGAWSGVLVAMVLF--GQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWLLLKASL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644553827 159 LQNVQG--WLLGDFSRVVQGH-YELLYVLVPVIILSYVFANRFTVVGMGQQMAASLGVSYKTTVAIGLMLVSVTVATTVI 235
Cdd:PRK10440 172 ETALTAglWNAGSLNGLTWAKtSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLTAAATA 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 644553827 236 TVGSIPFIGLVIPNlVAIKYGEHLARTLPVVALGGACLLLGCDITGRLLIYPFEIPIGLTAGAVGGIVFLLLILR 310
Cdd:PRK10440 252 LAGPISFIALVAPH-IARRLSGTARWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQ 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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