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Conserved domains on  [gi|644418173|ref|WP_025311575|]
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flagellar type III secretion system pore protein FliP [Roseibacterium elongatum]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
1-247 6.17e-108

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 311.28  E-value: 6.17e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   1 MRARELPALglaVALAVVLWPTGLAAQ------EITLAFGEGGELTARALQLIALITILSLAPGIAVMITCFPFVVTVLS 74
Cdd:COG1338    1 MRRRLLALL---LLLALLLLPAPALAQpglpslSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  75 ILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLGSLAL 154
Cdd:COG1338   78 FLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFAD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 155 LREIDLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADG 234
Cdd:COG1338  158 LAGEPPPETPEDVP-LRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDG 236

                        250
                 ....*....|...
gi 644418173 235 WALITGALVRSYF 247
Cdd:COG1338  237 WNLLVGSLVRSFG 249
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
1-247 6.17e-108

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 311.28  E-value: 6.17e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   1 MRARELPALglaVALAVVLWPTGLAAQ------EITLAFGEGGELTARALQLIALITILSLAPGIAVMITCFPFVVTVLS 74
Cdd:COG1338    1 MRRRLLALL---LLLALLLLPAPALAQpglpslSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  75 ILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLGSLAL 154
Cdd:COG1338   78 FLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFAD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 155 LREIDLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADG 234
Cdd:COG1338  158 LAGEPPPETPEDVP-LRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDG 236

                        250
                 ....*....|...
gi 644418173 235 WALITGALVRSYF 247
Cdd:COG1338  237 WNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 8-246 5.63e-95

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 278.23  E-value: 5.63e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   8 ALGLAVALAVVLWPTGLAAQEITLAFG-EGGELTARALQLIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSP 86
Cdd:PRK05699   6 LALALLLLALASAAAAAPLPGLNLLPGaNGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  87 PNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLGSLALLREIDlEATAGD 166
Cdd:PRK05699  86 PNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEP-PKTPED 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 167 APeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY 246
Cdd:PRK05699 165 VP-LSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
FliP pfam00813
FliP family;
50-242 2.22e-86

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 254.65  E-value: 2.22e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   50 ITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEAL 129
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  130 SAAYAPFRGFMMARVDPETLGSLALLREIdLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMS 209
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQ-WPETAEDVP-LTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMS 158

                         170       180       190
                  ....*....|....*....|....*....|...
gi 644418173  210 MGMMMVPPAIVSLPFKLAFFVVADGWALITGAL 242
Cdd:pfam00813 159 MGMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 49-246 6.59e-70

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 213.01  E-value: 6.59e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   49 LITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEA 128
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  129 LSAAYAPFRGFMMARVDPETLGSLALLREIDLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILM 208
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVP-LRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLM 159

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 644418173  209 SMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY 246
Cdd:TIGR01103 160 AMGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
1-247 6.17e-108

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 311.28  E-value: 6.17e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   1 MRARELPALglaVALAVVLWPTGLAAQ------EITLAFGEGGELTARALQLIALITILSLAPGIAVMITCFPFVVTVLS 74
Cdd:COG1338    1 MRRRLLALL---LLLALLLLPAPALAQpglpslSLTLGGAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  75 ILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLGSLAL 154
Cdd:COG1338   78 FLRQALGTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFAD 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 155 LREIDLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADG 234
Cdd:COG1338  158 LAGEPPPETPEDVP-LRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDG 236

                        250
                 ....*....|...
gi 644418173 235 WALITGALVRSYF 247
Cdd:COG1338  237 WNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 8-246 5.63e-95

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 278.23  E-value: 5.63e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   8 ALGLAVALAVVLWPTGLAAQEITLAFG-EGGELTARALQLIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSP 86
Cdd:PRK05699   6 LALALLLLALASAAAAAPLPGLNLLPGaNGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  87 PNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLGSLALLREIDlEATAGD 166
Cdd:PRK05699  86 PNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEP-PKTPED 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 167 APeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY 246
Cdd:PRK05699 165 VP-LSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
FliP pfam00813
FliP family;
50-242 2.22e-86

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 254.65  E-value: 2.22e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   50 ITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEAL 129
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  130 SAAYAPFRGFMMARVDPETLGSLALLREIdLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMS 209
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQ-WPETAEDVP-LTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMS 158

                         170       180       190
                  ....*....|....*....|....*....|...
gi 644418173  210 MGMMMVPPAIVSLPFKLAFFVVADGWALITGAL 242
Cdd:pfam00813 159 MGMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 49-246 6.59e-70

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 213.01  E-value: 6.59e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   49 LITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEA 128
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  129 LSAAYAPFRGFMMARVDPETLGSLALLREIDLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILM 208
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVP-LRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLM 159

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 644418173  209 SMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY 246
Cdd:TIGR01103 160 AMGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 44-246 1.58e-63

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 197.32  E-value: 1.58e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  44 LQLIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGET 123
Cdd:COG4790    8 LSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDRLQAAPVDFSS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 124 PP--VEALSAAYAPFRGFMMARVDPETLGSLA-LLREIDLEATAGDAPEAS--VLIPAFMLSEVERAFQIGFLIFLPFLV 198
Cdd:COG4790   88 SAsvLEAVDAGLEPLRDFLKKNTDPEERAFFLdAAQRLWPEEYAAKLKPDDllVLLPAFVLSELTSAFKIGFLLYLPFVV 167

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 644418173 199 IDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY 246
Cdd:COG4790  168 IDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSY 215
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 1-247 3.06e-62

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 195.48  E-value: 3.06e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   1 MRARELPALglavALAVVLWPTGLAAQEITLAFG----------EGGELTARALQLIALITILSLAPGIAVMITCFPFVV 70
Cdd:PRK12783   2 KRARAILVL----ALAAGLTASAALAQGAGGVTGvpgldallppGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  71 TVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLG 150
Cdd:PRK12783  78 VALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQ 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 151 SLALLREIDL-EATAGDAPEASVLIPAFMLSEVERAFQIGFLIFLPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFF 229
Cdd:PRK12783 158 TFTDLASRSFpKAEAGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFF 237

                        250
                 ....*....|....*...
gi 644418173 230 VVADGWALITGALVRSYF 247
Cdd:PRK12783 238 VLIDGWNLLVSGLVRSFF 255
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 44-243 3.03e-59

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 186.61  E-value: 3.03e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  44 LQLIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGET 123
Cdd:PRK12797   8 LQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPLSLQD 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 124 PP--VEALSAAYAPFRGFMMARVDPETLGSLA-LLREIDLEATAGDAPEAS--VLIPAFMLSEVERAFQIGFLIFLPFLV 198
Cdd:PRK12797  88 PDsvLQLLDAALAPLRDFLKKHTDERERTFFVrSAQRIWPEEAADSLKKDDllILIPAFTLSELTRAFEIGFLLYLPFIV 167

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 644418173 199 IDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALV 243
Cdd:PRK12797 168 IDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGLV 212
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 35-247 4.14e-50

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 168.14  E-value: 4.14e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  35 EGGELTARALQLIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVG 114
Cdd:PRK12430 167 DGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDKIYKDA 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 115 IAPLIAGETPPVEALSAAYAPFRGFMMARVDPETLGSLALLREIDLEATAGDAPeASVLIPAFMLSEVERAFQIGFLIFL 194
Cdd:PRK12430 247 YLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIP-MRILLPSFITSELKTAFQIGFTIFI 325

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 644418173 195 PFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSYF 247
Cdd:PRK12430 326 PFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSFN 378
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 46-242 2.29e-48

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 158.27  E-value: 2.29e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173   46 LIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPP 125
Cdd:TIGR01102   1 LIAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVAYSNID 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  126 --VEALSAAYAPFRGFMMARVDPETLG---SLALLREIDLEATAGDAPEASVLIPAFMLSEVERAFQIGFLIFLPFLVID 200
Cdd:TIGR01102  81 flQKSLDAGLAPYREFLKKNTDEDEVAffeRSTQKMWPKEMADRLKKDSLLILLPAFTLSELTAAFKIGFLLYLPFIVID 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 644418173  201 LVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGAL 242
Cdd:TIGR01102 161 LIVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
 48-246 8.25e-39

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 134.87  E-value: 8.25e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  48 ALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAYAVGIAPLIAGETPP-- 125
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVPRsl 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 126 ---------VEALSAAYAPFRGFMMARVDPETLGSLALLREIDLEATAGDAPEAS---VLIPAFMLSEVERAFQIGFLIF 193
Cdd:PRK09617 110 fsaegaetvFVAANKSKEPLRSFLIKNTPKPQIASFYKISQKTFPPEIRDALTPSdfmIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 644418173 194 LPFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSY 246
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
44-247 3.52e-37

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 130.10  E-value: 3.52e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173  44 LQLIALITILSLAPGIAVMITCFPFVVTVLSILRQALGLQQSPPNMLIVSLALFLTYFVMAPVFQEAY-AVGIAPLIAGE 122
Cdd:PRK12796   5 ISLIALLSFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYvYFQNEPVDFNN 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644418173 123 TPPVEALS-AAYAPFRGFMMARVDPETLGSLALLREIDLEATAGDAPEASV-------LIPAFMLSEVERAFQIGFLIFL 194
Cdd:PRK12796  85 IASVVKFVdEGLGGYRDYLIKYSDPELVRFFERAQKKRSYGDEAEANDHDKdeislfsLLPAYALSEIKSAFKIGFYLYL 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 644418173 195 PFLVIDLVAAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGALVRSYF 247
Cdd:PRK12796 165 PFVVVDLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLLSKGLILQYM 217
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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