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Conserved domains on  [gi|644369151|ref|WP_025304971|]
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MULTISPECIES: YncE family protein [Serratia]

Protein Classification

YncE family protein( domain architecture ID 11465355)

YncE family protein contains repeats resembling the NHL (NCL-1, HT2A and LIN-41) and YVTN-type repeats, similar to DNA-binding beta-propeller protein YncE and Bacillus subtilis uncharacterized protein YwhL

CATH:  2.130.10.10
PubMed:  22120742|10607670
SCOP:  4002745

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
122-331 1.62e-22

DNA-binding beta-propeller fold protein YncE [General function prediction only];


:

Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 94.38  E-value: 1.62e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 122 GDVKGRLVLDARQRSETVKPLAPRELVADADSDTLYITGLGESSVVWVVDGKDLTLRATVTDTGKYGTGLALDAAAKRLY 201
Cdd:COG3391    4 ASSLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 202 VTNADGELVT-IDTQSNKVLSRKKLDEAKEHfflnISLDTATHRAFITDSKQPQVLVVDTRSGNILSKIDVPESL-AVLF 279
Cdd:COG3391   84 VANSGSGRVSvIDLATGKVVATIPVGGGPRG----LAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVGAGPhGIAV 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 644369151 280 NPARNEVYVTHRQAGEVS----VIDAKSYKVLNTIKTPTHPNSLALSPDGQTLYVS 331
Cdd:COG3391  160 DPDGKRLYVANSGSNTVSvivsVIDTATGKVVATIPVGGGPVGVAVSPDGRRLYVA 215
Vgb super family cl26743
Streptogramin lyase [Defense mechanisms];
69-122 3.35e-03

Streptogramin lyase [Defense mechanisms];


The actual alignment was detected with superfamily member COG4257:

Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 38.85  E-value: 3.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 644369151  69 GGIVYRLDPTTLDVTQIIHND--IKPFGAAVNAKtGTLFFGNTVNNSVTAIDAKTG 122
Cdd:COG4257  208 SGRIGRFDPKTGTVTEYPLPGggARPYGVAVDGD-GRVWFAESGANRIVRFDPDTE 262
 
Name Accession Description Interval E-value
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
122-331 1.62e-22

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 94.38  E-value: 1.62e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 122 GDVKGRLVLDARQRSETVKPLAPRELVADADSDTLYITGLGESSVVWVVDGKDLTLRATVTDTGKYGTGLALDAAAKRLY 201
Cdd:COG3391    4 ASSLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 202 VTNADGELVT-IDTQSNKVLSRKKLDEAKEHfflnISLDTATHRAFITDSKQPQVLVVDTRSGNILSKIDVPESL-AVLF 279
Cdd:COG3391   84 VANSGSGRVSvIDLATGKVVATIPVGGGPRG----LAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVGAGPhGIAV 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 644369151 280 NPARNEVYVTHRQAGEVS----VIDAKSYKVLNTIKTPTHPNSLALSPDGQTLYVS 331
Cdd:COG3391  160 DPDGKRLYVANSGSNTVSvivsVIDTATGKVVATIPVGGGPVGVAVSPDGRRLYVA 215
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 93-330 1.32e-11

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 64.68  E-value: 1.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151   93 FGAAVNAKTGTLFFGNTVNNSVTAIDAKTGDVKGRLVLDARqrsetvkplaPRELVADADSDTLYITGlGESSVVWVVDG 172
Cdd:TIGR03866   2 LLAAGSAAAETAYVSNEKDNTISVIDTATLKVTRTFPVGQR----------PRGITFSKDGKLLYVCA-SDSDTIQVIDP 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  173 KDLTLRATVTdTGKYGTGLALDAAAKRLYVTNADGELVT-IDTQSNKVLsrKKLDEAKEHFFLNISLDTAThrAFITDSK 251
Cdd:TIGR03866  71 ATGEVLHTLP-SGPDPEQFALHPNGKILYIANEDDALVTvIDIETRKVL--AQIDVGVEPEGMAVSPDGKI--VVNTSET 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  252 QPQVLVVDTRSGNILSKIDV-PESLAVLFNPARNEVYVTHRQAGEVSVIDAKSYKVLNTI--------KTPTHPNSLALS 322
Cdd:TIGR03866 146 TNMAHWIDTATYEIVDNTLVdARPRFAEFTADGKELWVSSEIGGTVTVIDVATRKVIKKItfaipgvhPEKVQPVGIKLT 225


                  ....*...
gi 644369151  323 PDGQTLYV 330
Cdd:TIGR03866 226 KDGKTAFV 233
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
 190-330 1.07e-07

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 52.59  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 190 GLALDAAaKRLYVTN-ADGELVTIDTQSNKVlsrKKLDEAKEHFFL---NISLDtATHRAFITDSKQPQVLVVDtRSGNI 265
Cdd:cd14962   16 GVAADGR-GRIYVADtGRGAVFVFDLPNGKV---FVIGNAGPNRFVspiGVAID-ANGNLYVSDAELGKVFVFD-RDGKF 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644369151 266 LSKIDV------PESLAVlfNPARNEVYVTHRQAGEVSVIDAKSyKVLNTIKTP-------THPNSLALSPDGqTLYV 330
Cdd:cd14962   90 LRAIGAgalfkrPTGIAV--DPAGKRLYVVDTLAHKVKVFDLDG-RLLFDIGKRgsgpgefNLPTDLAVDRDG-NLYV 163
Cytochrom_D1 pfam02239
Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of ...
 148-330 2.05e-04

Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.


Pssm-ID: 366994 [Multi-domain]  Cd Length: 368  Bit Score: 42.84  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  148 VADADSDTLYITGLGESSVVWVVDGKDLTLRATVTDTGKYGTGLA------LDAAAKRLYVTNAD--GELVTIDTQSNKV 219
Cdd:pfam02239  82 VATSYDGRYVIVGNYWPGQYVIMDGRTLELVKVIPARGMTGDSPEsrvaaiVASPGRPEFVVNLKdtGEIWLVDYSDGKN 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  220 LSRKKLDEAKehfFLNISLDTATHRAFITDS-KQPQVLVVDTRSGNILSKIDV-----PESLAVLFNPARNEVYVT-HRQ 292
Cdd:pfam02239 162 LKTTFIEAAK---FLHDGGFDPDGRYFMAAAnASDKIAVWDTKRGKLVALLDYgktphPGPGANMPHLEGGPVWTTsHLG 238

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 644369151  293 A--------GEVSVIDAKSYKVLNTIKTP-------THPNS------LALSPDGQTLYV 330
Cdd:pfam02239 239 DfvtpligtDPVLVHDLQAWKQVKEIDVAggglfvkTHPDSrylwvdTFLNPDNDSVAV 297
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
69-122 3.35e-03

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 38.85  E-value: 3.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 644369151  69 GGIVYRLDPTTLDVTQIIHND--IKPFGAAVNAKtGTLFFGNTVNNSVTAIDAKTG 122
Cdd:COG4257  208 SGRIGRFDPKTGTVTEYPLPGggARPYGVAVDGD-GRVWFAESGANRIVRFDPDTE 262
 
Name Accession Description Interval E-value
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
122-331 1.62e-22

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 94.38  E-value: 1.62e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 122 GDVKGRLVLDARQRSETVKPLAPRELVADADSDTLYITGLGESSVVWVVDGKDLTLRATVTDTGKYGTGLALDAAAKRLY 201
Cdd:COG3391    4 ASSLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 202 VTNADGELVT-IDTQSNKVLSRKKLDEAKEHfflnISLDTATHRAFITDSKQPQVLVVDTRSGNILSKIDVPESL-AVLF 279
Cdd:COG3391   84 VANSGSGRVSvIDLATGKVVATIPVGGGPRG----LAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVGAGPhGIAV 159

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 644369151 280 NPARNEVYVTHRQAGEVS----VIDAKSYKVLNTIKTPTHPNSLALSPDGQTLYVS 331
Cdd:COG3391  160 DPDGKRLYVANSGSNTVSvivsVIDTATGKVVATIPVGGGPVGVAVSPDGRRLYVA 215
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
67-303 6.16e-18

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 82.05  E-value: 6.16e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  67 DKGGIVYRLDPTTLDVTQIIHNDIKPFGAAVNAKTG-TLFFGNTVNNSVTAIDAKTGDVKGRLVLDARqrsetvkplaPR 145
Cdd:COG3391   44 VVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGrRLYVANSGSGRVSVIDLATGKVVATIPVGGG----------PR 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 146 ELVADADSDTLYITGlGESSVVWVVDGKDLTLRATVtDTGKYGTGLALDAAAKRLYVTNA-DGELVTIdtqsnkvlsrkk 224
Cdd:COG3391  114 GLAVDPDGGRLYVAD-SGNGRVSVIDTATGKVVATI-PVGAGPHGIAVDPDGKRLYVANSgSNTVSVI------------ 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 225 ldeakehfflnisldtathrafitdskqpqVLVVDTRSGNILSKIDVPES-LAVLFNPARNEVYVTHRQAG-------EV 296
Cdd:COG3391  180 ------------------------------VSVIDTATGKVVATIPVGGGpVGVAVSPDGRRLYVANRGSNtsnggsnTV 229


                 ....*..
gi 644369151 297 SVIDAKS 303
Cdd:COG3391  230 SVIDLAT 236
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
26-217 2.14e-16

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 77.43  E-value: 2.14e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  26 SLLAQTAPEVLRKPVGKGAYEMAYSPSENALYLATSQSrkldkgGIVYRLDPTTLDVTQIIHNDIKPFGAAVNAKTGTLF 105
Cdd:COG3391   52 GGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGS------GRVSVIDLATGKVVATIPVGGGPRGLAVDPDGGRLY 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 106 FGNTVNNSVTAIDAKTGDVKGRLVLDARqrsetvkplaPRELVADADSDTLYITGLGESSV---VWVVDGKDLTLRATVt 182
Cdd:COG3391  126 VADSGNGRVSVIDTATGKVVATIPVGAG----------PHGIAVDPDGKRLYVANSGSNTVsviVSVIDTATGKVVATI- 194

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 644369151 183 DTGKYGTGLALDAAAKRLYVTNA--------DGELVTIDTQSN 217
Cdd:COG3391  195 PVGGGPVGVAVSPDGRRLYVANRgsntsnggSNTVSVIDLATL 237
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 93-330 1.32e-11

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 64.68  E-value: 1.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151   93 FGAAVNAKTGTLFFGNTVNNSVTAIDAKTGDVKGRLVLDARqrsetvkplaPRELVADADSDTLYITGlGESSVVWVVDG 172
Cdd:TIGR03866   2 LLAAGSAAAETAYVSNEKDNTISVIDTATLKVTRTFPVGQR----------PRGITFSKDGKLLYVCA-SDSDTIQVIDP 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  173 KDLTLRATVTdTGKYGTGLALDAAAKRLYVTNADGELVT-IDTQSNKVLsrKKLDEAKEHFFLNISLDTAThrAFITDSK 251
Cdd:TIGR03866  71 ATGEVLHTLP-SGPDPEQFALHPNGKILYIANEDDALVTvIDIETRKVL--AQIDVGVEPEGMAVSPDGKI--VVNTSET 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  252 QPQVLVVDTRSGNILSKIDV-PESLAVLFNPARNEVYVTHRQAGEVSVIDAKSYKVLNTI--------KTPTHPNSLALS 322
Cdd:TIGR03866 146 TNMAHWIDTATYEIVDNTLVdARPRFAEFTADGKELWVSSEIGGTVTVIDVATRKVIKKItfaipgvhPEKVQPVGIKLT 225


                  ....*...
gi 644369151  323 PDGQTLYV 330
Cdd:TIGR03866 226 KDGKTAFV 233
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
29-303 1.49e-09

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 58.11  E-value: 1.49e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  29 AQTAPEVLRKPV---GKGAYEMAYSPSENALYLATSqsrkldkGGIVYRLDPTTLDVTQIIHNDI-KPFGAAVnAKTGTL 104
Cdd:COG4257    1 AASAVDITEYPVpapGSGPRDVAVDPDGAVWFTDQG-------GGRIGRLDPATGEFTEYPLGGGsGPHGIAV-DPDGNL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 105 FFGNTVNNSVTAIDAKTGDVKgRLVLDARQRsetvkplAPRELVADADsDTLYITGLGeSSVVWVVDGKDLTLRATVTDT 184
Cdd:COG4257   73 WFTDNGNNRIGRIDPKTGEIT-TFALPGGGS-------NPHGIAFDPD-GNLWFTDQG-GNRIGRLDPATGEVTEFPLPT 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 185 GKYGT-GLALDAAAkRLYVT-NADGELVTIDTQSNKVlsrkkldeakEHFFLNISLDTATH-------RAFITDSKQPQV 255
Cdd:COG4257  143 GGAGPyGIAVDPDG-NLWVTdFGANAIGRIDPDTGTL----------TEYALPTPGAGPRGlavdpdgNLWVADTGSGRI 211

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 644369151 256 LVVDTRSGNI-----LSKIDVPESLAVlfnPARNEVYVTHRQAGEVSVIDAKS 303
Cdd:COG4257  212 GRFDPKTGTVteyplPGGGARPYGVAV---DGDGRVWFAESGANRIVRFDPDT 261
Pgl COG2706
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
147-331 9.36e-08

6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442025 [Multi-domain]  Cd Length: 352  Bit Score: 52.99  E-value: 9.36e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 147 LVADADSDTLY-ITGLGESSVV-WVVDGKD--LTLRATVTDTGKYGTGLALDAAAKRLYVTN------------ADGEL- 209
Cdd:COG2706   50 LALSPDGRFLYaVNEVDDGGVSaFRIDPADgtLTLLNTVSSGGASPCHLSVDPDGRFLFVANygggsvsvfpidADGSLg 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 210 --VTIDTQSNKVLSRKKLDEAKEHFflnISLDTATHRAFITDSKQPQVLV--VDTRSGNI-------LSKIDVPESLAvl 278
Cdd:COG2706  130 epVQVIQHEGSGPNPERQEGPHAHS---VVFDPDGRFLYVPDLGTDRIYVyrLDPATGKLpeppevsLPPGSGPRHLA-- 204

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644369151 279 FNPARNEVYVTHRQAGEVSV--IDAK--SYKVLNTIKT-------PTHPNSLALSPDGQTLYVS 331
Cdd:COG2706  205 FHPNGRFAYVINELDSTVSVyaYDAAtgTLTLIQTVSTlpedftgENWAADIHISPDGRFLYVS 268
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
 190-330 1.07e-07

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 52.59  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 190 GLALDAAaKRLYVTN-ADGELVTIDTQSNKVlsrKKLDEAKEHFFL---NISLDtATHRAFITDSKQPQVLVVDtRSGNI 265
Cdd:cd14962   16 GVAADGR-GRIYVADtGRGAVFVFDLPNGKV---FVIGNAGPNRFVspiGVAID-ANGNLYVSDAELGKVFVFD-RDGKF 89

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644369151 266 LSKIDV------PESLAVlfNPARNEVYVTHRQAGEVSVIDAKSyKVLNTIKTP-------THPNSLALSPDGqTLYV 330
Cdd:cd14962   90 LRAIGAgalfkrPTGIAV--DPAGKRLYVVDTLAHKVKVFDLDG-RLLFDIGKRgsgpgefNLPTDLAVDRDG-NLYV 163
8prop_hemeD1_NirF cd20778
eight-bladed heme d1-binding beta-propeller domain in cytochrome cd1 nitrate reductase NirF; ...
 47-332 1.50e-07

eight-bladed heme d1-binding beta-propeller domain in cytochrome cd1 nitrate reductase NirF; Denitrification is a process that enables biofilm formation of the opportunistic human pathogen Pseudomonas aeruginosa, making it more resilient to antibiotics and highly adaptable to different habitats. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO3- -> NO2- -> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic cytochrome cd1 (nitrite reductase) NirS via its maturation factor NirF. The nirFDLGHJE genes encode proteins required for heme d1 biosynthesis. NirS, NirF, and NirN, the monomeric dihydro-heme d1 dehydrogenase form a stable complex during nitrite reductase maturation. The nitrite reductase NirS is bound to the denitrification supercomplex via NorB, while the electron donor system NirM and the enzyme maturation machinery NirN-NirF-NirQ, interacting with NirS, are bound via NorC.


Pssm-ID: 467722 [Multi-domain]  Cd Length: 381  Bit Score: 52.67  E-value: 1.50e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  47 MAYSPSENALYLATsqsrkldKGGIVYRLDPTTLDV---TQIIHNDIkpfGAAVNAKTGTLFFGNTVNNSVTAIDAKTGD 123
Cdd:cd20778   56 MVFSRDGRYAYVIG-------RDGGLSKVDLLTLKVvarVKQSGNSI---GGAISQDGRYVAVANYDPGGVKILDADTLK 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 124 VKGRL---VLDARQRSETVkplapreLVADAdSDTLYITGLGESSVVWVVDGKDLTLRATVT--DTGK--YGtglALDAA 196
Cdd:cd20778  126 VLADIpagSKGGGQRSRVV-------GLVDA-PGNRFIFSLMDADEIWVLDASDPDFPVVKKfkDIGRmpYD---ALITP 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 197 AKRLYVT---NADG----ELVTIDTQSNKVLSRKKLDEAK------EHF-FLNISLDtathRAFITDSKQPQVLVVDTRS 262
Cdd:cd20778  195 DGRYYIAglfNSDGvgllDLWKPERGVRRILLDYGKGEEKlpvykmPHLeGWAVAGD----KAFVPAVGEHRVLVYDTND 270

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644369151 263 GNILSKIDV---PesLAVLFNPARNEVYVT--HRQAGEVSVIDAKSYKVLNTIKTP---THpnsLALSPDGQTLYVSV 332
Cdd:cd20778  271 WKFIKSIPLagqP--VFAVARPDGRYVWVNfsGPDNDTVQVIDTKTLKVVKTLEPGkrvLH---MEFTPRGEAVYISV 343
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
 68-330 4.99e-07

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 50.28  E-value: 4.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  68 KGGIVYRLDPTTLDVTQIIHNDIKPFGAAVNAKtGTLFFGNTvNNSVTAIDAKTGDVKgRLVldarqrSETVKPLA-PRE 146
Cdd:COG3386   27 PGGRIHRYDPDGGAVEVFAEPSGRPNGLAFDPD-GRLLVADH-GRGLVRFDPADGEVT-VLA------DEYGKPLNrPND 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 147 LVADADsDTLYITGLGE---SSVVWVVDgKDLTLRATVTDTGkYGTGLALDAAAKRLYVTN-ADGELVTIDTQSNKVLSR 222
Cdd:COG3386   98 GVVDPD-GRLYFTDMGEylpTGALYRVD-PDGSLRVLADGLT-FPNGIAFSPDGRTLYVADtGAGRIYRFDLDADGTLGN 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 223 KkldeakehfflnisldtathRAFITDSKQPQV---LVVDtRSGNIlskidvpeslavlfnparnevYVTHRQAGEVSVI 299
Cdd:COG3386  175 R--------------------RVFADLPDGPGGpdgLAVD-ADGNL---------------------WVALWGGGGVVRF 212

                        250       260       270
                 ....*....|....*....|....*....|...
gi 644369151 300 DAKSyKVLNTIKTP-THPNSLAL-SPDGQTLYV 330
Cdd:COG3386  213 DPDG-ELLGRIELPeRRPTNVAFgGPDLRTLYV 244
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 241-331 2.49e-06

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 48.50  E-value: 2.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  241 ATHRAFITDSKQPQVLVVDTRSGNILSKIDVPES-LAVLFNPARNEVYVTHRQAGEVSVIDAKSYKVLNTIKTPTHPNSL 319
Cdd:TIGR03866   9 AAETAYVSNEKDNTISVIDTATLKVTRTFPVGQRpRGITFSKDGKLLYVCASDSDTIQVIDPATGEVLHTLPSGPDPEQF 88

                          90
                  ....*....|..
gi 644369151  320 ALSPDGQTLYVS 331
Cdd:TIGR03866  89 ALHPNGKILYIA 100
8prop_heme_binding_protein cd20718
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; ...
 157-314 2.61e-05

eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; Members here contain an 8-bladed beta-propeller heme-binding domain in cytochrome cd1 (nitrite reductase) and similar proteins including NirN and NirF. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO(3-)-> NO(2-)-> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. NirN and NirF form a stable complex with the nitrite reductase NirS during enzyme maturation. NirF is involved in heme d1 insertion.


Pssm-ID: 467720 [Multi-domain]  Cd Length: 380  Bit Score: 45.79  E-value: 2.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 157 YITGLGESSVVWVVDGKDLTLRATVtDTGKY---GTGlALDAAAKRLYVTNADGELVT-IDTQSNKVLsrKKLDEAKEHF 232
Cdd:cd20718  210 FIVASQGSNTMWVLDLKTGKVVARI-PTGKTphpGPG-ATWGRKGVTATPHLGEGIVTvWDLDTWKPV--KYIPTPGPGR 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 233 FLNISLDT---ATHRAFITDsKQPQVLVVDTRSGNILSKIDV---PESLAVLFNPARNEVYVTHRQAGEVSVIDAKSYKV 306
Cdd:cd20718  286 FVRTHPSSpyvWADTVFGPE-NADEIYVIDKETLKVVKTLIPkpgKRALHPEFTRDGKYVYVSVWDGGEVVVYDAETLEL 364

                        170
                 ....*....|
gi 644369151 307 LNTIK--TPT 314
Cdd:cd20718  365 VKRIPaeTPT 374
PQQ_ABC_repeats TIGR03866
PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family ...
 282-351 2.82e-05

PQQ-dependent catabolism-associated beta-propeller protein; Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.


Pssm-ID: 274824 [Multi-domain]  Cd Length: 310  Bit Score: 45.42  E-value: 2.82e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  282 ARNEVYVTHRQAGEVSVIDAKSYKVLNTIKTPTHPNSLALSPDGQTLYVsvkqassrekeATAPDDVIRV 351
Cdd:TIGR03866   9 AAETAYVSNEKDNTISVIDTATLKVTRTFPVGQRPRGITFSKDGKLLYV-----------CASDSDTIQV 67
beta_rpt_yvtn TIGR02276
40-residue YVTN family beta-propeller repeat; This repeat of about 40 amino acids is found in ...
 281-322 1.69e-04

40-residue YVTN family beta-propeller repeat; This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (pfam00400).


Pssm-ID: 213697 [Multi-domain]  Cd Length: 42  Bit Score: 38.43  E-value: 1.69e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 644369151  281 PARNEVYVTHRQAGEVSVIDAKSYKVLNTIKTPTHPNSLALS 322
Cdd:TIGR02276   1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42
Cytochrom_D1 pfam02239
Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of ...
 148-330 2.05e-04

Cytochrome D1 heme domain; Cytochrome cd1 (nitrite reductase) catalyzes the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.


Pssm-ID: 366994 [Multi-domain]  Cd Length: 368  Bit Score: 42.84  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  148 VADADSDTLYITGLGESSVVWVVDGKDLTLRATVTDTGKYGTGLA------LDAAAKRLYVTNAD--GELVTIDTQSNKV 219
Cdd:pfam02239  82 VATSYDGRYVIVGNYWPGQYVIMDGRTLELVKVIPARGMTGDSPEsrvaaiVASPGRPEFVVNLKdtGEIWLVDYSDGKN 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  220 LSRKKLDEAKehfFLNISLDTATHRAFITDS-KQPQVLVVDTRSGNILSKIDV-----PESLAVLFNPARNEVYVT-HRQ 292
Cdd:pfam02239 162 LKTTFIEAAK---FLHDGGFDPDGRYFMAAAnASDKIAVWDTKRGKLVALLDYgktphPGPGANMPHLEGGPVWTTsHLG 238

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 644369151  293 A--------GEVSVIDAKSYKVLNTIKTP-------THPNS------LALSPDGQTLYV 330
Cdd:pfam02239 239 DfvtpligtDPVLVHDLQAWKQVKEIDVAggglfvkTHPDSrylwvdTFLNPDNDSVAV 297
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
 148-331 2.15e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 42.19  E-value: 2.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 148 VADADsDTLYITGLGESSVV-WVVDGKDLTlraTVTDTGKYGTGLALDAAAkRLYVTNADGELVTIDTQSNKVlsRKKLD 226
Cdd:COG3386   14 VWDPD-GRLYWVDIPGGRIHrYDPDGGAVE---VFAEPSGRPNGLAFDPDG-RLLVADHGRGLVRFDPADGEV--TVLAD 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 227 EA-KEHFFLNisldtathrafitDskqpqvLVVDtRSGNIlskidvpeslavlfnparnevYVT----HRQAGEVSVIDA 301
Cdd:COG3386   87 EYgKPLNRPN-------------D------GVVD-PDGRL---------------------YFTdmgeYLPTGALYRVDP 125

                        170       180       190
                 ....*....|....*....|....*....|..
gi 644369151 302 --KSYKVLNTIktpTHPNSLALSPDGQTLYVS 331
Cdd:COG3386  126 dgSLRVLADGL---TFPNGIAFSPDGRTLYVA 154
Pgl COG2706
6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];
255-331 3.35e-04

6-phosphogluconolactonase, cycloisomerase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442025 [Multi-domain]  Cd Length: 352  Bit Score: 42.20  E-value: 3.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 255 VLVVDTRSG-----NILSKIDVPESLAVlfNPARNEVYVTHR-QAGEVSV--IDAKS--YKVLNTIKT-PTHPNSLALSP 323
Cdd:COG2706   25 VFRLDTATGeltllGLVAALGNPSFLAL--SPDGRFLYAVNEvDDGGVSAfrIDPADgtLTLLNTVSSgGASPCHLSVDP 102


                 ....*...
gi 644369151 324 DGQTLYVS 331
Cdd:COG2706  103 DGRFLFVA 110
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 68-303 4.39e-04

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 41.23  E-value: 4.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151   68 KGGIVYRLDPTTldVTQIIHNDIK-PFGAAVNAKTGTLFFGnTVNNSVTAIDAKTGDVKGRLVLDARQRSetvKPLAPRE 146
Cdd:pfam13360   1 ADGVVTALDAAT--GAELWRVDLEtGLGGGVAVDGGRLFVA-TGGGQLVALDAATGKLLWRQTLSGEVLG---APLVAGG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  147 LVADADSDtlyitglgesSVVWVVDGKDLTLRATVTDTG---KYGTGLALDAAAKRLYVTNADGELVTIDTQSNKVLSRK 223
Cdd:pfam13360  75 RVFVVAGD----------GSLIALDAADGRRLWSYQRSGeplALRSSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  224 KLDEAKE----HFFLNISLDT--ATHRAFITdSKQPQVLVVDTRSGNILSKIDVPESLAVLfnPARNEVYVtHRQAGEVS 297
Cdd:pfam13360 145 PLAAPRGtnelERLVDITGTPvvAGGRVFAS-AYQGRLVAFDAATGRRLWTREISGPNGPI--LDGDLLYV-VSDDGELY 220


                  ....*.
gi 644369151  298 VIDAKS 303
Cdd:pfam13360 221 ALDRAT 226
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
 91-233 4.89e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 41.42  E-value: 4.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  91 KPFGAAVNAKtGTLFFGNTVNNSVTAIDAKTGDVKgrlVLDARQRSETVKPLAprelVADADSDTLYITGlGESSVVWVV 170
Cdd:cd14962   13 RPYGVAADGR-GRIYVADTGRGAVFVFDLPNGKVF---VIGNAGPNRFVSPIG----VAIDANGNLYVSD-AELGKVFVF 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644369151 171 DGKDLTLRA-TVTDTGKYGTGLALDAAAKRLYVTnadgelvtiDTQSNKVlsrKKLDEAKEHFF 233
Cdd:cd14962   84 DRDGKFLRAiGAGALFKRPTGIAVDPAGKRLYVV---------DTLAHKV---KVFDLDGRLLF 135
8prop_heme_binding_protein cd20718
eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; ...
 207-330 9.43e-04

eight-bladed beta-propeller heme-binding domain in cytochrome cd1 and similar proteins; Members here contain an 8-bladed beta-propeller heme-binding domain in cytochrome cd1 (nitrite reductase) and similar proteins including NirN and NirF. During denitrification, nitrate (Nar), nitrite (Nir), nitric oxide (Nor), and nitrous oxide (Nos) reductases catalyze the reaction cascade of NO(3-)-> NO(2-)-> NO -> N2O -> N2. The integral membrane proteins NorC, NorB, and NosR form the core assembly platform that binds the nitrate reductase NarGHI and the periplasmic nitrite reductase NirS via its maturation factor NirF. NirN and NirF form a stable complex with the nitrite reductase NirS during enzyme maturation. NirF is involved in heme d1 insertion.


Pssm-ID: 467720 [Multi-domain]  Cd Length: 380  Bit Score: 40.78  E-value: 9.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 207 GELVTIDT---QSNKVLSRKKLDEAKEHFFLnisldTATHRAFITDSKQPQVL-VVDTRSGNILSKIDV-----PESLAV 277
Cdd:cd20718  173 GSVWVIDYsdpDGNKVTDIGNIGRPLHDAFL-----DPDGRYFIVASQGSNTMwVLDLKTGKVVARIPTgktphPGPGAT 247

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 644369151 278 LFNpaRNEVYVTHRQAGEVSVIDAKSYKVLNTIKTPTHPNSLALSPDGQTLYV 330
Cdd:cd20718  248 WGR--KGVTATPHLGEGIVTVWDLDTWKPVKYIPTPGPGRFVRTHPSSPYVWA 298
PQQ_2 pfam13360
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
 165-307 1.63e-03

PQQ-like domain; This domain contains several repeats of the PQQ repeat.


Pssm-ID: 433144 [Multi-domain]  Cd Length: 233  Bit Score: 39.31  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  165 SVVWVVDGKDLTLRATVTDTGKYGTGLALDAaaKRLYVTNADGELVTIDTQSNKVLSRKKLDEakehfFLNISLDTATHR 244
Cdd:pfam13360   3 GVVTALDAATGAELWRVDLETGLGGGVAVDG--GRLFVATGGGQLVALDAATGKLLWRQTLSG-----EVLGAPLVAGGR 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 644369151  245 AFITDSKQpQVLVVDTRSGNILSKIDVPESLAVLFNPA-----RNEVYVtHRQAGEVSVIDAKSYKVL 307
Cdd:pfam13360  76 VFVVAGDG-SLIALDAADGRRLWSYQRSGEPLALRSSGspavvGDTVVA-GFSSGKLVALDPATGKVR 141
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
 239-331 1.66e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 39.49  E-value: 1.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 239 DTATHRAFITDSKQPQVLVVDTRSGNILSKidvPESLAVlfnPARNEVYVTHRQAGEVSVIDAKSyKVLNTIKTP---TH 315
Cdd:cd14962   29 DTGRGAVFVFDLPNGKVFVIGNAGPNRFVS---PIGVAI---DANGNLYVSDAELGKVFVFDRDG-KFLRAIGAGalfKR 101

                         90
                 ....*....|....*.
gi 644369151 316 PNSLALSPDGQTLYVS 331
Cdd:cd14962  102 PTGIAVDPAGKRLYVV 117
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
69-122 3.35e-03

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 38.85  E-value: 3.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 644369151  69 GGIVYRLDPTTLDVTQIIHND--IKPFGAAVNAKtGTLFFGNTVNNSVTAIDAKTG 122
Cdd:COG4257  208 SGRIGRFDPKTGTVTEYPLPGggARPYGVAVDGD-GRVWFAESGANRIVRFDPDTE 262
WD40 COG2319
WD40 repeat [General function prediction only];
113-328 4.18e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 38.74  E-value: 4.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 113 SVTAIDAKTGDVKGRLVLDARQRSETVKPLAPRELVADADSDTLYITGLGESSV-VWVVDGKdlTLRATVTDTGKYGTGL 191
Cdd:COG2319   49 ARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVrLWDLATG--LLLRTLTGHTGAVRSV 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151 192 ALDAAAKRLYVTNADGELVTIDTQSNKVLSRkkldeakehffLNISLDTATHRAFITDSKQ-------PQVLVVDTRSGN 264
Cdd:COG2319  127 AFSPDGKTLASGSADGTVRLWDLATGKLLRT-----------LTGHSGAVTSVAFSPDGKLlasgsddGTVRLWDLATGK 195

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644369151 265 ILSKIDVPES--LAVLFNPaRNEVYVTHRQAGEVSVIDAKSYKVLNTIKTPTHP-NSLALSPDGQTL 328
Cdd:COG2319  196 LLRTLTGHTGavRSVAFSP-DGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSvRSVAFSPDGRLL 261
YjiK COG3204
Uncharacterized Ca-binding beta-propeller protein YjiK [General function prediction only];
38-160 5.55e-03

Uncharacterized Ca-binding beta-propeller protein YjiK [General function prediction only];


Pssm-ID: 442437 [Multi-domain]  Cd Length: 271  Bit Score: 38.03  E-value: 5.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644369151  38 KPVGKGAYE-MAYSPSENALYLAtsQSRKLDKggiVYRLDPTTLDVTQIIHNDIKPF----GAAVNAKTGTLFFGNTVNN 112
Cdd:COG3204  139 SEKGNKGFEgLAYDPKNNRLFVA--KERDPDG---IYEFDLDSKKLTGSPDKALKGVkdpsALAIDPITGHLLILSDESK 213

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 644369151 113 SVTAIDAKtGDVKGRLVLDArqrsetvKPLAPR-ELVADADSDTLYITG 160
Cdd:COG3204  214 LLLELDRD-GKVVSALSLDK-------GFDFPQpEGIAFDPDGNLYIVS 254
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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